Wall clock time and date at job start Fri Apr 10 2020 21:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36442 * 124.85487 * 2 1 4 4 C 1.34482 * 108.85820 * 179.68707 * 3 2 1 5 5 C 1.46688 * 106.33246 * 0.43497 * 4 3 2 6 6 C 1.47265 * 126.94022 * 179.82524 * 5 4 3 7 7 O 1.21627 * 119.99961 * 218.67924 * 6 5 4 8 8 N 1.34936 * 119.99838 * 38.68459 * 6 5 4 9 9 C 1.44789 * 120.11423 * 176.31817 * 8 6 5 10 10 C 1.51404 * 113.20298 * 268.15819 * 9 8 6 11 11 C 1.51239 * 114.18711 * 296.79175 * 10 9 8 12 12 H 1.09699 * 110.63754 * 178.25153 * 11 10 9 13 13 C 1.54094 * 108.49400 * 300.15476 * 11 10 9 14 14 C 1.53981 * 104.89654 * 93.62913 * 13 11 10 15 15 C 1.52066 * 105.59568 * 10.60436 * 14 13 11 16 16 H 1.09369 * 108.33870 * 123.89334 * 15 14 13 17 17 C 1.49329 * 120.08150 * 355.91276 * 8 6 5 18 18 N 1.47745 * 109.51844 * 6.00428 * 15 14 13 19 19 C 1.37169 * 127.10962 * 158.78371 * 18 15 14 20 20 H 1.08002 * 120.00257 * 180.02562 * 19 18 15 21 21 C 1.38813 * 119.99818 * 0.02920 * 19 18 15 22 22 N 1.31611 * 120.00223 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99674 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47428 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.47090 * 119.99902 * 23 21 19 26 26 H 1.48500 * 109.47107 * 239.99352 * 23 21 19 27 27 C 1.34661 * 124.85061 * 179.97438 * 2 1 3 28 28 H 1.08998 * 109.47370 * 270.02281 * 1 2 3 29 29 H 1.09003 * 109.46531 * 30.02822 * 1 2 3 30 30 H 1.09002 * 109.46660 * 150.02007 * 1 2 3 31 31 H 1.08008 * 125.56660 * 359.97438 * 3 2 1 32 32 H 1.08001 * 126.83581 * 180.27046 * 4 3 2 33 33 H 1.08930 * 109.07821 * 146.32425 * 9 8 6 34 34 H 1.09341 * 108.45943 * 28.74699 * 9 8 6 35 35 H 1.09155 * 108.83330 * 58.51823 * 10 9 8 36 36 H 1.09337 * 108.47889 * 175.66123 * 10 9 8 37 37 H 1.09319 * 110.68496 * 334.36777 * 13 11 10 38 38 H 1.09361 * 110.58711 * 212.76543 * 13 11 10 39 39 H 1.09080 * 110.61169 * 251.01645 * 14 13 11 40 40 H 1.09296 * 110.25649 * 129.56290 * 14 13 11 41 41 H 1.09105 * 109.47210 * 253.49556 * 17 8 6 42 42 H 1.09041 * 109.58612 * 13.32441 * 17 8 6 43 43 H 0.96998 * 120.00291 * 180.02562 * 22 21 19 44 44 H 1.07998 * 125.79993 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2448 1.1196 0.0000 4 6 3.5375 0.7491 0.0070 5 6 3.5462 -0.7178 0.0009 6 6 4.7284 -1.5959 0.0014 7 8 4.7286 -2.6159 -0.6611 8 7 5.8113 -1.2689 0.7370 9 6 6.9436 -2.1689 0.8027 10 6 6.8688 -3.1380 1.9635 11 6 6.8956 -2.4782 3.3242 12 1 6.8075 -3.2286 4.1195 13 6 8.2108 -1.6864 3.4577 14 6 7.8588 -0.2559 3.0098 15 6 6.3422 -0.2220 2.9044 16 1 5.9709 0.5859 3.5413 17 6 5.8490 0.0267 1.4786 18 7 5.7843 -1.4967 3.4009 19 6 4.5072 -1.7230 3.8475 20 1 4.2204 -2.7072 4.1875 21 6 3.5834 -0.6870 3.8624 22 7 3.9329 0.5124 3.4485 23 14 1.8440 -0.9954 4.4699 24 1 1.7065 -2.4169 4.8770 25 1 1.5637 -0.1181 5.6348 26 1 0.8792 -0.6961 3.3814 27 6 2.2345 -1.1051 0.0005 28 1 -0.3634 0.0004 1.0276 29 1 -0.3632 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.8829 2.1373 -0.0004 32 1 4.3981 1.4015 0.0129 33 1 7.8592 -1.5840 0.8819 34 1 6.9849 -2.7418 -0.1277 35 1 5.9519 -3.7236 1.8751 36 1 7.7152 -3.8267 1.8951 37 1 8.9844 -2.1112 2.8126 38 1 8.5573 -1.6885 4.4949 39 1 8.3143 -0.0328 2.0441 40 1 8.2007 0.4684 3.7535 41 1 6.5269 0.7158 0.9726 42 1 4.8492 0.4610 1.5067 43 1 3.2875 1.2364 3.4592 44 1 1.8767 -2.1241 0.0006 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045754276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:15:38 Heat of formation + Delta-G solvation = 50.779494 kcal Electronic energy + Delta-G solvation = -27360.741437 eV Core-core repulsion = 23893.854051 eV Total energy + Delta-G solvation = -3466.887386 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 303.169 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.03291 -40.87538 -39.11704 -35.43969 -34.87763 -33.65635 -33.01140 -31.08891 -30.04149 -28.76297 -27.76138 -26.72027 -25.51356 -24.21658 -22.17859 -21.25989 -21.06275 -20.50202 -19.59668 -18.80653 -17.68174 -17.15976 -16.67875 -16.58718 -16.20053 -15.93605 -15.72114 -15.39615 -14.93905 -14.50976 -14.26519 -13.99848 -13.87867 -13.57642 -13.51062 -13.19347 -13.11233 -13.00076 -12.93266 -12.79839 -12.63245 -12.59317 -12.42760 -12.24104 -11.93424 -11.40272 -11.37936 -11.08355 -10.94547 -10.61854 -10.45807 -9.32609 -9.15939 -8.96962 -8.60279 -7.59918 -4.94126 1.12613 1.42160 1.45216 1.51507 1.72028 2.08093 2.40139 2.57267 2.85002 3.51426 3.73723 3.95901 4.06059 4.10837 4.13854 4.24512 4.26287 4.34043 4.41239 4.46517 4.48832 4.61187 4.65648 4.73812 4.78415 4.80278 4.94889 5.00894 5.15942 5.17794 5.19816 5.25991 5.34214 5.39893 5.46731 5.60358 5.62910 5.86140 5.97677 6.04419 6.17606 6.27687 6.46445 6.55383 6.82555 7.33416 7.56588 7.95386 8.67806 9.43157 Molecular weight = 303.17amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.008143 C = 0.006423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.064190 B = 3437.911250 C = 4358.160198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.445 5.445 3 C -0.011 4.011 4 C -0.164 4.164 5 C -0.226 4.226 6 C 0.583 3.417 7 O -0.620 6.620 8 N -0.572 5.572 9 C 0.127 3.873 10 C -0.134 4.134 11 C 0.144 3.856 12 H 0.043 0.957 13 C -0.113 4.113 14 C -0.125 4.125 15 C 0.157 3.843 16 H 0.070 0.930 17 C 0.089 3.911 18 N -0.594 5.594 19 C -0.225 4.225 20 H 0.051 0.949 21 C -0.024 4.024 22 N -0.904 5.904 23 Si 0.941 3.059 24 H -0.294 1.294 25 H -0.296 1.296 26 H -0.290 1.290 27 C 0.038 3.962 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.096 0.904 31 H 0.195 0.805 32 H 0.144 0.856 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.012 0.988 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.064 0.936 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.134 0.866 43 H 0.245 0.755 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 3.855 -5.232 6.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.121 5.121 3 C -0.138 4.138 4 C -0.188 4.188 5 C -0.237 4.237 6 C 0.374 3.626 7 O -0.505 6.505 8 N -0.300 5.300 9 C 0.004 3.996 10 C -0.174 4.174 11 C 0.037 3.963 12 H 0.061 0.939 13 C -0.151 4.151 14 C -0.163 4.163 15 C 0.050 3.950 16 H 0.088 0.912 17 C -0.033 4.033 18 N -0.317 5.317 19 C -0.354 4.354 20 H 0.069 0.931 21 C -0.220 4.220 22 N -0.552 5.552 23 Si 0.774 3.226 24 H -0.220 1.220 25 H -0.224 1.224 26 H -0.217 1.217 27 C -0.097 4.097 28 H 0.082 0.918 29 H 0.133 0.867 30 H 0.114 0.886 31 H 0.212 0.788 32 H 0.161 0.839 33 H 0.107 0.893 34 H 0.072 0.928 35 H 0.031 0.969 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.061 0.939 42 H 0.151 0.849 43 H 0.055 0.945 44 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 0.191 3.486 -5.476 6.494 hybrid contribution -1.219 -0.640 0.644 1.520 sum -1.028 2.845 -4.832 5.701 Atomic orbital electron populations 1.22306 0.75202 1.06374 1.03464 1.43617 1.07717 1.05003 1.55762 1.22040 0.90036 0.92062 1.09663 1.21925 0.96923 0.91849 1.08086 1.20223 0.92206 0.94673 1.16550 1.17925 0.82957 0.83767 0.77945 1.90597 1.83333 1.29606 1.47015 1.47858 1.15586 1.20803 1.45759 1.20566 0.89139 0.92543 0.97379 1.21859 1.00129 0.98314 0.97119 1.21232 0.89085 0.92206 0.93731 0.93856 1.22396 0.95990 0.95138 1.01606 1.22174 0.95601 0.97139 1.01392 1.21004 0.90430 0.90293 0.93237 0.91244 1.23822 1.05823 0.81924 0.91729 1.44911 1.06762 1.06024 1.73972 1.18941 0.86957 0.94610 1.34862 0.93144 1.24844 0.98858 0.95983 1.02292 1.69811 1.32852 1.00134 1.52415 0.85577 0.83680 0.76153 0.77236 1.21997 1.22405 1.21686 1.21463 0.90118 0.92015 1.06088 0.91843 0.86669 0.88577 0.78788 0.83869 0.89315 0.92779 0.96895 0.89763 0.89170 0.91698 0.90642 0.91494 0.93900 0.84900 0.94479 0.82499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.44 11.04 127.77 1.41 2.85 16 2 N -0.45 -14.38 3.09 -547.89 -1.69 -16.07 16 3 C -0.01 -0.35 11.34 83.12 0.94 0.59 16 4 C -0.16 -6.18 8.57 23.62 0.20 -5.98 16 5 C -0.23 -9.95 5.53 -19.04 -0.11 -10.06 16 6 C 0.58 28.21 7.60 86.59 0.66 28.87 16 7 O -0.62 -32.93 16.58 -4.12 -0.07 -33.00 16 8 N -0.57 -25.08 2.52 -825.15 -2.08 -27.16 16 9 C 0.13 4.92 5.04 86.18 0.43 5.36 16 10 C -0.13 -5.18 5.03 29.50 0.15 -5.03 16 11 C 0.14 5.77 3.80 44.41 0.17 5.94 16 12 H 0.04 1.79 8.20 -2.01 -0.02 1.77 16 13 C -0.11 -3.51 5.99 31.30 0.19 -3.32 16 14 C -0.12 -4.13 5.74 30.62 0.18 -3.95 16 15 C 0.16 6.76 2.29 44.41 0.10 6.86 16 16 H 0.07 3.46 6.22 -2.19 -0.01 3.45 16 17 C 0.09 3.76 4.76 85.80 0.41 4.17 16 18 N -0.59 -28.47 2.33 -647.97 -1.51 -29.98 16 19 C -0.22 -12.25 10.37 84.00 0.87 -11.38 16 20 H 0.05 2.88 7.83 -2.91 -0.02 2.86 16 21 C -0.02 -1.28 5.49 84.86 0.47 -0.82 16 22 N -0.90 -46.45 8.28 21.65 0.18 -46.27 16 23 Si 0.94 44.73 29.55 68.60 2.03 46.76 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 27 C 0.04 1.53 11.28 83.91 0.95 2.48 16 28 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.11 1.68 8.13 -2.39 -0.02 1.66 16 30 H 0.10 1.74 8.13 -2.39 -0.02 1.72 16 31 H 0.20 4.52 8.06 -2.91 -0.02 4.50 16 32 H 0.14 5.13 6.93 -2.91 -0.02 5.11 16 33 H 0.09 2.89 5.73 -2.42 -0.01 2.87 16 34 H 0.05 2.17 7.27 -2.21 -0.02 2.15 16 35 H 0.01 0.58 8.15 -2.30 -0.02 0.56 16 36 H 0.08 2.63 8.14 -2.21 -0.02 2.62 16 37 H 0.09 2.26 7.65 -2.22 -0.02 2.24 16 38 H 0.06 1.91 8.17 -2.20 -0.02 1.89 16 39 H 0.08 2.18 6.60 -2.34 -0.02 2.17 16 40 H 0.07 2.07 8.17 -2.23 -0.02 2.05 16 41 H 0.04 1.60 7.82 -2.33 -0.02 1.58 16 42 H 0.13 5.98 2.29 -2.37 -0.01 5.98 16 43 H 0.24 12.46 8.31 -92.71 -0.77 11.69 16 44 H 0.16 6.11 8.06 -2.91 -0.02 6.09 16 Total: -1.00 -69.29 335.54 4.89 -64.40 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 1.01 Total: 24.74 kcal Atomic # 6 Polarization: 9.56 SS G_CDS: 7.02 Total: 16.58 kcal Atomic # 7 Polarization: -114.38 SS G_CDS: -5.10 Total: -119.48 kcal Atomic # 8 Polarization: -32.93 SS G_CDS: -0.07 Total: -33.00 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -69.29 4.89 -64.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045754276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.183 kcal (2) G-P(sol) polarization free energy of solvation -69.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds