Wall clock time and date at job start Fri Apr 10 2020 21:15:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38381 * 119.92528 * 2 1 4 4 C 1.38336 * 120.29386 * 179.97438 * 3 2 1 5 5 C 1.37987 * 120.13917 * 359.77829 * 4 3 2 6 6 C 1.50700 * 120.06939 * 180.23305 * 5 4 3 7 7 C 1.39549 * 119.85206 * 0.49791 * 5 4 3 8 8 C 1.47850 * 120.14057 * 179.76453 * 7 5 4 9 9 O 1.21552 * 120.00310 * 300.49513 * 8 7 5 10 10 N 1.34777 * 120.00080 * 120.50275 * 8 7 5 11 11 C 1.46502 * 120.00051 * 4.60178 * 10 8 7 12 12 C 1.50692 * 109.47551 * 265.93728 * 11 10 8 13 13 H 1.07999 * 120.00448 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99914 * 179.97438 * 12 11 10 15 15 N 1.31517 * 119.99882 * 179.97438 * 14 12 11 16 16 Si 1.86794 * 120.00186 * 0.02562 * 14 12 11 17 17 H 1.48502 * 109.47017 * 89.99644 * 16 14 12 18 18 H 1.48493 * 109.47289 * 209.99849 * 16 14 12 19 19 H 1.48505 * 109.46979 * 329.99974 * 16 14 12 20 20 C 1.46499 * 119.99952 * 184.61615 * 10 8 7 21 21 C 1.52996 * 109.46760 * 269.98997 * 20 10 8 22 22 C 1.53000 * 109.47400 * 179.97438 * 21 20 10 23 23 C 1.53000 * 109.46879 * 65.00129 * 22 21 20 24 24 C 1.53005 * 109.47312 * 185.00137 * 22 21 20 25 25 C 1.37933 * 119.92624 * 180.02562 * 2 1 3 26 26 H 1.08991 * 109.47148 * 269.97798 * 1 2 3 27 27 H 1.09000 * 109.47085 * 29.97889 * 1 2 3 28 28 H 1.09001 * 109.46935 * 149.97953 * 1 2 3 29 29 H 1.08003 * 119.85253 * 359.97438 * 3 2 1 30 30 H 1.07998 * 119.93183 * 180.02562 * 4 3 2 31 31 H 1.08995 * 109.47490 * 265.06327 * 6 5 4 32 32 H 1.08998 * 109.47277 * 25.06867 * 6 5 4 33 33 H 1.09002 * 109.46729 * 145.06316 * 6 5 4 34 34 H 1.09004 * 109.46957 * 25.93862 * 11 10 8 35 35 H 1.09001 * 109.46774 * 145.93221 * 11 10 8 36 36 H 0.96992 * 120.00112 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.47226 * 149.99682 * 20 10 8 38 38 H 1.08998 * 109.47513 * 29.99436 * 20 10 8 39 39 H 1.08998 * 109.47466 * 300.00468 * 21 20 10 40 40 H 1.08999 * 109.47410 * 60.00163 * 21 20 10 41 41 H 1.09001 * 109.47257 * 305.00500 * 22 21 20 42 42 H 1.09004 * 109.47361 * 60.00095 * 23 22 21 43 43 H 1.08995 * 109.47528 * 179.97438 * 23 22 21 44 44 H 1.08996 * 109.47423 * 300.00214 * 23 22 21 45 45 H 1.08996 * 109.46974 * 60.00354 * 24 22 21 46 46 H 1.09000 * 109.46793 * 180.02562 * 24 22 21 47 47 H 1.08995 * 109.46889 * 299.99756 * 24 22 21 48 48 H 1.07998 * 120.07674 * 0.02675 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2082 0.0005 5 6 4.2812 0.0194 0.0057 6 6 5.7882 0.0309 0.0116 7 6 3.5911 -1.1935 -0.0002 8 6 4.3353 -2.4711 0.0001 9 8 5.1067 -2.7253 -0.9042 10 7 4.1582 -3.3539 1.0029 11 6 3.1555 -3.0943 2.0389 12 6 3.8099 -2.4103 3.2114 13 1 4.8672 -2.1913 3.1876 14 6 3.0589 -2.0641 4.3147 15 7 3.6302 -1.4677 5.3382 16 14 1.2304 -2.4435 4.3563 17 1 1.0177 -3.7909 4.9435 18 1 0.5326 -1.4271 5.1840 19 1 0.6872 -2.4145 2.9745 20 6 4.9687 -4.5731 1.0571 21 6 4.2597 -5.6913 0.2904 22 6 5.1063 -6.9645 0.3464 23 6 5.1921 -7.4566 1.7926 24 6 4.4602 -8.0453 -0.5227 25 6 2.1952 -1.1954 -0.0005 26 1 -0.3633 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6538 2.1325 -0.0004 30 1 4.1136 2.1476 0.0009 31 1 6.1562 -0.0568 -1.0106 32 1 6.1427 0.9654 0.4465 33 1 6.1556 -0.8076 0.6033 34 1 2.3729 -2.4524 1.6343 35 1 2.7185 -4.0377 2.3661 36 1 3.1020 -1.2244 6.1145 37 1 5.1035 -4.8739 2.0961 38 1 5.9420 -4.3829 0.6048 39 1 3.2864 -5.8815 0.7428 40 1 4.1248 -5.3906 -0.7485 41 1 6.1087 -6.7509 -0.0247 42 1 4.1897 -7.6702 2.1638 43 1 5.7948 -8.3639 1.8325 44 1 5.6524 -6.6867 2.4117 45 1 4.3991 -7.6947 -1.5529 46 1 5.0631 -8.9524 -0.4824 47 1 3.4579 -8.2589 -0.1514 48 1 1.6552 -2.1307 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103440708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:15:59 Heat of formation + Delta-G solvation = -35.850037 kcal Electronic energy + Delta-G solvation = -25915.313892 eV Core-core repulsion = 22548.210311 eV Total energy + Delta-G solvation = -3367.103581 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 303.194 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.98360 -38.19518 -36.54602 -34.85262 -33.42320 -32.47507 -31.11545 -29.23105 -28.85568 -27.50758 -27.01021 -24.75771 -23.86095 -22.93237 -22.02003 -20.74648 -19.75620 -18.29742 -16.99401 -16.49326 -15.80644 -15.40193 -15.36150 -14.99570 -14.46555 -14.05071 -13.86915 -13.64877 -13.50902 -13.24953 -12.91422 -12.86542 -12.61857 -12.50111 -12.37867 -12.22968 -12.07902 -11.86341 -11.68416 -11.61035 -11.25471 -11.15391 -11.05224 -10.87807 -10.78730 -10.67679 -10.62828 -10.49176 -10.29878 -10.08007 -9.58999 -9.18847 -8.71012 -8.38647 -8.04661 -7.72945 -6.18102 -4.17594 1.55188 1.75610 3.17819 3.25322 3.26467 3.28171 3.75207 4.19879 4.29272 4.98907 5.03336 5.10992 5.11548 5.13256 5.14305 5.23416 5.31433 5.46679 5.56615 5.69915 5.71486 5.79938 5.81136 5.84276 5.86565 5.94208 5.97422 5.97918 6.02016 6.08097 6.09377 6.21578 6.27478 6.29740 6.36190 6.36332 6.48788 6.58580 6.59059 6.62039 6.68155 6.74457 6.87375 6.95858 7.31155 7.36366 7.48571 8.09556 8.43119 8.81945 8.89906 9.41758 10.94912 Molecular weight = 303.19amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.006130 C = 0.004843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.033835 B = 4566.456251 C = 5780.287017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.101 4.101 3 C -0.106 4.106 4 C -0.122 4.122 5 C -0.041 4.041 6 C -0.110 4.110 7 C -0.095 4.095 8 C 0.563 3.437 9 O -0.561 6.561 10 N -0.582 5.582 11 C 0.197 3.803 12 C -0.532 4.532 13 H 0.077 0.923 14 C 0.078 3.922 15 N -0.892 5.892 16 Si 0.866 3.134 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.263 1.263 20 C 0.119 3.881 21 C -0.128 4.128 22 C -0.093 4.093 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.080 4.080 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.123 0.877 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.834 -2.548 -9.878 10.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.124 4.124 4 C -0.140 4.140 5 C -0.041 4.041 6 C -0.167 4.167 7 C -0.098 4.098 8 C 0.351 3.649 9 O -0.441 6.441 10 N -0.311 5.311 11 C 0.076 3.924 12 C -0.570 4.570 13 H 0.095 0.905 14 C -0.125 4.125 15 N -0.530 5.530 16 Si 0.693 3.307 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.187 1.187 20 C -0.004 4.004 21 C -0.167 4.167 22 C -0.112 4.112 23 C -0.208 4.208 24 C -0.202 4.202 25 C -0.099 4.099 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.137 0.863 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.477 -2.627 -10.120 10.745 hybrid contribution -1.081 -0.122 0.550 1.219 sum -3.558 -2.749 -9.570 10.574 Atomic orbital electron populations 1.20746 0.91403 1.02233 1.02310 1.19688 0.95849 0.92980 1.01625 1.20990 0.94112 0.97148 1.00148 1.20847 0.94019 0.97125 1.02023 1.19740 0.96089 0.91609 0.96700 1.20756 0.91010 1.02642 1.02286 1.19639 0.93670 0.93306 1.03140 1.18263 0.81608 0.83308 0.81741 1.90690 1.38715 1.78181 1.36553 1.47896 1.38290 1.19789 1.25093 1.20087 0.88212 0.96902 0.87175 1.21301 0.97758 1.38813 0.99117 0.90518 1.24822 0.98019 0.94424 0.95258 1.69885 1.36226 1.40508 1.06331 0.86991 0.86240 0.78634 0.78875 1.20004 1.20869 1.18704 1.21420 0.94309 0.83535 1.01086 1.22003 0.99270 0.94344 1.01081 1.21044 0.99551 0.94753 0.95886 1.21912 1.01817 1.00876 0.96162 1.21820 1.00570 0.98218 0.99570 1.20949 0.92664 0.97733 0.98557 0.91265 0.91779 0.91834 0.86283 0.85954 0.90992 0.91774 0.91336 0.93558 0.95517 0.92494 0.89832 0.90958 0.91981 0.91861 0.91211 0.92712 0.93164 0.91947 0.92897 0.93009 0.92878 0.86002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 36.01 0.36 -1.07 16 2 C -0.10 -1.66 5.87 -104.68 -0.61 -2.27 16 3 C -0.11 -1.63 9.69 -39.49 -0.38 -2.02 16 4 C -0.12 -1.99 9.67 -39.64 -0.38 -2.37 16 5 C -0.04 -0.76 5.91 -104.23 -0.62 -1.38 16 6 C -0.11 -1.92 9.15 36.01 0.33 -1.59 16 7 C -0.09 -1.92 4.98 -104.97 -0.52 -2.44 16 8 C 0.56 12.04 5.95 -12.33 -0.07 11.97 16 9 O -0.56 -12.67 16.16 5.32 0.09 -12.58 16 10 N -0.58 -12.22 2.46 -176.18 -0.43 -12.65 16 11 C 0.20 4.47 4.05 -5.20 -0.02 4.45 16 12 C -0.53 -14.27 9.94 -34.44 -0.34 -14.61 16 13 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 14 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 15 N -0.89 -26.23 13.96 55.43 0.77 -25.46 16 16 Si 0.87 20.17 27.47 -169.99 -4.67 15.50 16 17 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 20 C 0.12 2.19 5.15 -4.04 -0.02 2.16 16 21 C -0.13 -1.99 5.01 -26.73 -0.13 -2.12 16 22 C -0.09 -1.20 2.92 -90.62 -0.26 -1.46 16 23 C -0.15 -1.86 8.95 37.16 0.33 -1.53 16 24 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 25 C -0.08 -1.49 7.24 -39.19 -0.28 -1.78 16 26 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 27 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 28 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 29 H 0.12 1.47 8.06 -52.48 -0.42 1.05 16 30 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 31 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 33 H 0.07 1.34 7.26 -51.93 -0.38 0.97 16 34 H 0.05 1.05 3.26 -51.93 -0.17 0.88 16 35 H 0.03 0.59 7.53 -51.93 -0.39 0.20 16 36 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 37 H 0.08 1.54 6.50 -51.93 -0.34 1.20 16 38 H 0.07 1.35 7.49 -51.93 -0.39 0.96 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 0.83 6.57 -51.93 -0.34 0.48 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.12 2.14 7.26 -52.49 -0.38 1.76 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -30.62 383.92 -9.16 -39.77 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.31 Total: 4.91 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.39 Total: -15.28 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.34 Total: -38.11 kcal Atomic # 8 Polarization: -12.67 SS G_CDS: 0.09 Total: -12.58 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -4.67 Total: 15.50 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.62 -9.16 -39.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103440708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.924 kcal (2) G-P(sol) polarization free energy of solvation -30.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds