Wall clock time and date at job start Fri Apr 10 2020 21:18:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.53006 * 110.53650 * 302.83246 * 3 2 1 5 5 N 1.47318 * 110.59906 * 65.82925 * 3 2 1 6 6 C 1.34522 * 106.62346 * 118.30532 * 5 3 2 7 7 O 1.21527 * 123.77408 * 180.20844 * 6 5 3 8 8 N 1.33799 * 112.45281 * 0.38363 * 6 5 3 9 9 C 1.40200 * 124.17363 * 179.86745 * 8 6 5 10 10 C 1.38920 * 120.03568 * 353.56190 * 9 8 6 11 11 C 1.38163 * 120.07603 * 180.02562 * 10 9 8 12 12 C 1.38167 * 120.13428 * 359.97438 * 11 10 9 13 13 C 1.38911 * 120.05959 * 359.73406 * 12 11 10 14 14 O 1.35744 * 120.03831 * 180.29803 * 13 12 11 15 15 C 1.34833 * 116.99730 * 6.00762 * 14 13 12 16 16 H 1.07996 * 120.00552 * 5.38116 * 15 14 13 17 17 C 1.38661 * 119.99880 * 185.38415 * 15 14 13 18 18 N 1.31555 * 119.99771 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99904 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47244 * 89.99753 * 19 17 15 21 21 H 1.48501 * 109.46855 * 209.99935 * 19 17 15 22 22 H 1.48501 * 109.47073 * 330.00006 * 19 17 15 23 23 C 1.38666 * 120.03126 * 173.58643 * 9 8 6 24 24 C 1.34760 * 111.64748 * 359.59279 * 8 6 5 25 25 O 1.21232 * 127.16070 * 180.19399 * 24 8 6 26 26 H 1.08999 * 109.47289 * 299.99816 * 1 2 3 27 27 H 1.09000 * 109.47202 * 60.00001 * 1 2 3 28 28 H 1.09005 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47289 * 240.00184 * 2 1 3 30 30 H 1.09000 * 109.47202 * 119.99999 * 2 1 3 31 31 H 1.09003 * 109.46913 * 297.86939 * 4 3 2 32 32 H 1.09000 * 109.47108 * 57.87178 * 4 3 2 33 33 H 1.09001 * 109.47061 * 177.87193 * 4 3 2 34 34 H 0.97002 * 126.68428 * 298.55857 * 5 3 2 35 35 H 1.08000 * 119.95608 * 359.97438 * 10 9 8 36 36 H 1.07994 * 119.93362 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.96913 * 180.02562 * 12 11 10 38 38 H 0.97008 * 119.99619 * 180.02562 * 18 17 15 39 39 H 1.08008 * 120.06484 * 359.97319 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4864 2.2075 -1.2039 5 7 1.6803 2.1194 1.2581 6 6 2.8363 2.4612 1.8553 7 8 2.9004 3.0373 2.9233 8 7 3.9075 2.0992 1.1400 9 6 5.2327 2.3371 1.5311 10 6 5.4978 3.1023 2.6598 11 6 6.8034 3.3376 3.0457 12 6 7.8492 2.8127 2.3111 13 6 7.5904 2.0417 1.1849 14 8 8.6181 1.5210 0.4670 15 6 9.8592 1.6839 0.9682 16 1 9.9941 2.1316 1.9417 17 6 10.9625 1.2766 0.2336 18 7 12.1733 1.4351 0.7228 19 14 10.7293 0.5017 -1.4500 20 1 10.7401 1.5625 -2.4890 21 1 11.8325 -0.4576 -1.7104 22 1 9.4297 -0.2160 -1.4889 23 6 6.2800 1.8091 0.7913 24 6 3.5555 1.4724 0.0001 25 8 4.2967 1.0261 -0.8491 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8386 1.7410 -2.1240 32 1 0.3969 2.1850 -1.1791 33 1 1.8294 3.2415 -1.1664 34 1 0.7846 2.2831 1.5926 35 1 4.6824 3.5143 3.2358 36 1 7.0069 3.9325 3.9238 37 1 8.8687 2.9980 2.6154 38 1 12.9452 1.1505 0.2087 39 1 6.0763 1.2139 -0.0866 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000771880098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:18:05 Heat of formation + Delta-G solvation = -29.644473 kcal Electronic energy + Delta-G solvation = -24944.690409 eV Core-core repulsion = 21240.763822 eV Total energy + Delta-G solvation = -3703.926587 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.95751 -39.19382 -38.84681 -37.54943 -36.47282 -35.16960 -32.81666 -32.37067 -30.01281 -29.75087 -28.88200 -26.01836 -25.33247 -23.78834 -23.23361 -21.82273 -20.49173 -20.34766 -18.43898 -17.56010 -17.40702 -16.99374 -16.35502 -15.89425 -15.56538 -15.38947 -15.11582 -14.51325 -14.39983 -14.29834 -13.92584 -13.78418 -13.55608 -13.12226 -12.88327 -12.60885 -12.49142 -12.31074 -12.26975 -12.05718 -11.79878 -11.65873 -11.39728 -11.16378 -10.94211 -10.36548 -10.29833 -10.19702 -9.77174 -9.73395 -9.37230 -8.87108 -8.02658 -7.37516 -6.41725 -4.08745 1.41146 1.83178 2.05746 2.21048 2.84836 3.06912 3.24234 3.28248 3.44453 3.62870 4.07786 4.25580 4.27577 4.46824 4.73900 4.76615 4.83954 5.01207 5.03816 5.08617 5.23289 5.27191 5.43511 5.46145 5.51868 5.61513 5.63745 5.78455 5.94348 6.04967 6.19206 6.32605 6.54708 6.60210 6.81533 7.13139 7.21181 7.26091 7.33985 7.56073 7.78130 7.99475 8.04037 8.93372 9.54930 10.65597 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.004094 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.248480 B = 6837.205533 C = 7963.500474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.122 3.878 4 C -0.149 4.149 5 N -0.719 5.719 6 C 0.705 3.295 7 O -0.527 6.527 8 N -0.512 5.512 9 C 0.160 3.840 10 C -0.215 4.215 11 C -0.061 4.061 12 C -0.222 4.222 13 C 0.173 3.827 14 O -0.212 6.212 15 C -0.390 4.390 16 H 0.108 0.892 17 C 0.065 3.935 18 N -0.878 5.878 19 Si 0.903 3.097 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.258 1.258 23 C -0.208 4.208 24 C 0.523 3.477 25 O -0.442 6.442 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.438 0.562 35 H 0.148 0.852 36 H 0.120 0.880 37 H 0.137 0.863 38 H 0.280 0.720 39 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.350 -0.426 -2.157 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.032 3.968 4 C -0.207 4.207 5 N -0.385 5.385 6 C 0.406 3.594 7 O -0.400 6.400 8 N -0.249 5.249 9 C 0.070 3.930 10 C -0.235 4.235 11 C -0.080 4.080 12 C -0.242 4.242 13 C 0.120 3.880 14 O -0.117 6.117 15 C -0.465 4.465 16 H 0.125 0.875 17 C -0.138 4.138 18 N -0.515 5.515 19 Si 0.729 3.271 20 H -0.198 1.198 21 H -0.207 1.207 22 H -0.182 1.182 23 C -0.229 4.229 24 C 0.309 3.691 25 O -0.309 6.309 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.283 0.717 35 H 0.165 0.835 36 H 0.138 0.862 37 H 0.155 0.845 38 H 0.090 0.910 39 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.569 -0.525 -2.309 23.687 hybrid contribution -0.163 -0.173 -0.396 0.462 sum -23.732 -0.698 -2.705 23.896 Atomic orbital electron populations 1.21807 0.94015 1.02789 1.02263 1.21761 0.97486 0.91996 1.04586 1.21522 0.91868 0.96178 0.87252 1.22060 1.02418 1.00564 0.95679 1.45651 1.07804 1.62581 1.22449 1.15773 0.80775 0.79402 0.83412 1.90896 1.84771 1.44245 1.20133 1.43653 1.06970 1.52793 1.21495 1.17202 0.78924 1.00162 0.96724 1.21188 0.98382 1.05064 0.98832 1.20706 0.91497 0.97545 0.98207 1.21434 1.00560 1.03742 0.98429 1.18689 0.87576 0.91142 0.90560 1.83591 1.14612 1.67549 1.45910 1.20780 0.78599 1.42786 1.04381 0.87504 1.24456 0.93522 0.96456 0.99415 1.69648 0.97588 1.45472 1.38840 0.86206 0.78773 0.79626 0.82537 1.19822 1.20716 1.18168 1.20239 0.89125 1.08782 1.04725 1.20846 0.90532 0.76929 0.80795 1.90769 1.58497 1.43052 1.38628 0.92478 0.91684 0.91614 0.89004 0.90539 0.89551 0.89877 0.91211 0.71681 0.83455 0.86248 0.84512 0.91008 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.41 37.16 0.35 -0.32 16 2 C -0.12 -0.85 5.30 -26.73 -0.14 -0.99 16 3 C 0.12 1.10 1.01 -132.08 -0.13 0.97 16 4 C -0.15 -0.99 8.62 37.16 0.32 -0.67 16 5 N -0.72 -6.52 5.62 -52.93 -0.30 -6.82 16 6 C 0.71 9.96 8.54 -88.02 -0.75 9.20 16 7 O -0.53 -8.79 14.66 5.34 0.08 -8.72 16 8 N -0.51 -8.24 2.83 -64.37 -0.18 -8.42 16 9 C 0.16 3.12 6.56 -83.62 -0.55 2.57 16 10 C -0.21 -4.09 9.25 -39.36 -0.36 -4.45 16 11 C -0.06 -1.16 10.03 -39.63 -0.40 -1.56 16 12 C -0.22 -4.91 9.13 -39.36 -0.36 -5.27 16 13 C 0.17 4.18 6.64 -39.13 -0.26 3.92 16 14 O -0.21 -5.75 8.58 0.06 0.00 -5.75 16 15 C -0.39 -11.11 9.90 30.89 0.31 -10.81 16 16 H 0.11 3.08 5.53 -52.49 -0.29 2.79 16 17 C 0.07 1.84 5.49 -17.51 -0.10 1.75 16 18 N -0.88 -25.48 13.96 55.48 0.77 -24.71 16 19 Si 0.90 22.05 28.62 -169.99 -4.86 17.18 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 22 H -0.26 -6.38 7.11 56.52 0.40 -5.98 16 23 C -0.21 -4.55 9.26 -39.22 -0.36 -4.91 16 24 C 0.52 7.47 6.85 -10.56 -0.07 7.40 16 25 O -0.44 -7.52 15.06 5.60 0.08 -7.44 16 26 H 0.06 0.22 7.40 -51.93 -0.38 -0.17 16 27 H 0.06 0.22 6.42 -51.93 -0.33 -0.11 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.33 6.37 -51.93 -0.33 0.00 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.44 2.63 8.40 -40.82 -0.34 2.29 16 35 H 0.15 2.72 5.18 -52.49 -0.27 2.45 16 36 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 37 H 0.14 3.10 5.71 -52.49 -0.30 2.80 16 38 H 0.28 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.15 3.23 5.36 -52.48 -0.28 2.95 16 LS Contribution 324.10 15.07 4.88 4.88 Total: -1.00 -32.84 324.10 -6.24 -39.08 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -4.21 Total: 3.88 kcal Atomic # 6 Polarization: -0.67 SS G_CDS: -2.51 Total: -3.18 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.29 Total: -39.94 kcal Atomic # 8 Polarization: -22.07 SS G_CDS: 0.16 Total: -21.91 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.86 Total: 17.18 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.84 -6.24 -39.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.436 kcal (2) G-P(sol) polarization free energy of solvation -32.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds