Wall clock time and date at job start Fri Apr 10 2020 21:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46928 * 2 1 4 4 C 1.53006 * 110.53650 * 302.83246 * 3 2 1 5 5 N 1.47318 * 110.59906 * 65.82925 * 3 2 1 6 6 C 1.34522 * 106.62346 * 118.30532 * 5 3 2 7 7 O 1.21527 * 123.77408 * 180.20844 * 6 5 3 8 8 N 1.33799 * 112.45281 * 0.38363 * 6 5 3 9 9 C 1.40200 * 124.17363 * 179.86745 * 8 6 5 10 10 C 1.38920 * 120.03568 * 353.56190 * 9 8 6 11 11 C 1.38163 * 120.07603 * 180.02562 * 10 9 8 12 12 C 1.38167 * 120.13428 * 359.97438 * 11 10 9 13 13 C 1.38911 * 120.05959 * 359.73406 * 12 11 10 14 14 O 1.35744 * 120.03831 * 180.29803 * 13 12 11 15 15 C 1.34833 * 116.99730 * 6.00762 * 14 13 12 16 16 H 1.07996 * 120.00552 * 5.38116 * 15 14 13 17 17 C 1.38661 * 119.99880 * 185.38415 * 15 14 13 18 18 N 1.31555 * 119.99771 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 119.99904 * 359.97438 * 17 15 14 20 20 H 1.48496 * 109.47244 * 89.99753 * 19 17 15 21 21 H 1.48501 * 109.46855 * 209.99935 * 19 17 15 22 22 H 1.48501 * 109.47073 * 330.00006 * 19 17 15 23 23 C 1.38666 * 120.03126 * 173.58643 * 9 8 6 24 24 C 1.34760 * 111.64748 * 359.59279 * 8 6 5 25 25 O 1.21232 * 127.16070 * 180.19399 * 24 8 6 26 26 H 1.08999 * 109.47289 * 299.99816 * 1 2 3 27 27 H 1.09000 * 109.47202 * 60.00001 * 1 2 3 28 28 H 1.09005 * 109.47197 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47289 * 240.00184 * 2 1 3 30 30 H 1.09000 * 109.47202 * 119.99999 * 2 1 3 31 31 H 1.09003 * 109.46913 * 297.86939 * 4 3 2 32 32 H 1.09000 * 109.47108 * 57.87178 * 4 3 2 33 33 H 1.09001 * 109.47061 * 177.87193 * 4 3 2 34 34 H 0.97002 * 126.68428 * 298.55857 * 5 3 2 35 35 H 1.08000 * 119.95608 * 359.97438 * 10 9 8 36 36 H 1.07994 * 119.93362 * 180.02562 * 11 10 9 37 37 H 1.07994 * 119.96913 * 180.02562 * 12 11 10 38 38 H 0.97008 * 119.99619 * 180.02562 * 18 17 15 39 39 H 1.08008 * 120.06484 * 359.97319 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4864 2.2075 -1.2039 5 7 1.6803 2.1194 1.2581 6 6 2.8363 2.4612 1.8553 7 8 2.9004 3.0373 2.9233 8 7 3.9075 2.0992 1.1400 9 6 5.2327 2.3371 1.5311 10 6 5.4978 3.1023 2.6598 11 6 6.8034 3.3376 3.0457 12 6 7.8492 2.8127 2.3111 13 6 7.5904 2.0417 1.1849 14 8 8.6181 1.5210 0.4670 15 6 9.8592 1.6839 0.9682 16 1 9.9941 2.1316 1.9417 17 6 10.9625 1.2766 0.2336 18 7 12.1733 1.4351 0.7228 19 14 10.7293 0.5017 -1.4500 20 1 10.7401 1.5625 -2.4890 21 1 11.8325 -0.4576 -1.7104 22 1 9.4297 -0.2160 -1.4889 23 6 6.2800 1.8091 0.7913 24 6 3.5555 1.4724 0.0001 25 8 4.2967 1.0261 -0.8491 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8386 1.7410 -2.1240 32 1 0.3969 2.1850 -1.1791 33 1 1.8294 3.2415 -1.1664 34 1 0.7846 2.2831 1.5926 35 1 4.6824 3.5143 3.2358 36 1 7.0069 3.9325 3.9238 37 1 8.8687 2.9980 2.6154 38 1 12.9452 1.1505 0.2087 39 1 6.0763 1.2139 -0.0866 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000771880098.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:18:04 Heat of formation + Delta-G solvation = -52.040142 kcal Electronic energy + Delta-G solvation = -24945.661558 eV Core-core repulsion = 21240.763822 eV Total energy + Delta-G solvation = -3704.897736 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.126 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -44.08517 -40.95390 -40.04258 -38.92938 -37.82201 -36.43843 -34.50624 -33.65937 -31.61732 -30.55063 -30.33928 -27.38245 -26.79885 -24.90517 -24.61312 -23.15265 -21.91341 -21.42237 -20.06704 -19.25209 -18.82857 -18.11714 -17.54515 -17.14423 -17.00079 -16.75909 -16.28470 -15.98956 -15.84840 -15.69918 -15.45413 -15.10525 -14.65900 -14.34887 -14.28517 -14.20837 -13.68400 -13.56377 -13.24693 -13.14519 -12.96817 -12.81340 -12.77793 -12.34921 -12.10179 -11.87597 -11.83112 -11.71898 -11.35828 -10.95562 -10.92602 -10.64205 -9.68485 -9.15116 -8.53782 -6.27088 0.07298 0.41200 0.51403 0.89621 1.28998 1.32423 1.50053 1.82703 1.94885 2.25659 2.61647 2.69628 2.98516 3.01309 3.39757 3.62029 3.88615 4.01111 4.01955 4.25582 4.28556 4.34115 4.37331 4.55302 4.58184 4.62946 4.78723 4.81097 5.02381 5.05137 5.09877 5.17957 5.21602 5.31352 5.43963 5.52929 5.65273 5.75334 5.79689 5.93320 6.04488 6.21815 6.80005 6.94439 7.51068 8.57319 Molecular weight = 304.13amu Principal moments of inertia in cm(-1) A = 0.020150 B = 0.004094 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.248480 B = 6837.205533 C = 7963.500474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.137 3.863 4 C -0.147 4.147 5 N -0.687 5.687 6 C 0.702 3.298 7 O -0.554 6.554 8 N -0.524 5.524 9 C 0.166 3.834 10 C -0.201 4.201 11 C -0.049 4.049 12 C -0.233 4.233 13 C 0.144 3.856 14 O -0.239 6.239 15 C -0.402 4.402 16 H 0.088 0.912 17 C 0.017 3.983 18 N -0.916 5.916 19 Si 0.964 3.036 20 H -0.265 1.265 21 H -0.262 1.262 22 H -0.269 1.269 23 C -0.215 4.215 24 C 0.511 3.489 25 O -0.475 6.475 26 H 0.067 0.933 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.121 0.879 33 H 0.062 0.938 34 H 0.457 0.543 35 H 0.164 0.836 36 H 0.157 0.843 37 H 0.124 0.876 38 H 0.286 0.714 39 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.273 -0.311 -2.645 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.157 4.157 3 C 0.047 3.953 4 C -0.205 4.205 5 N -0.354 5.354 6 C 0.403 3.597 7 O -0.430 6.430 8 N -0.261 5.261 9 C 0.074 3.926 10 C -0.220 4.220 11 C -0.067 4.067 12 C -0.253 4.253 13 C 0.094 3.906 14 O -0.146 6.146 15 C -0.478 4.478 16 H 0.106 0.894 17 C -0.182 4.182 18 N -0.556 5.556 19 Si 0.786 3.214 20 H -0.190 1.190 21 H -0.186 1.186 22 H -0.193 1.193 23 C -0.236 4.236 24 C 0.300 3.700 25 O -0.345 6.345 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.090 0.910 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.139 0.861 33 H 0.081 0.919 34 H 0.307 0.693 35 H 0.181 0.819 36 H 0.175 0.825 37 H 0.142 0.858 38 H 0.096 0.904 39 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -27.590 -0.407 -2.796 27.735 hybrid contribution 0.776 -0.140 -0.123 0.798 sum -26.814 -0.547 -2.919 26.978 Atomic orbital electron populations 1.21826 0.91224 1.03773 1.03625 1.21821 0.99709 0.89965 1.04167 1.21670 0.87560 0.98060 0.87998 1.22155 1.04624 0.99545 0.94157 1.45502 1.07197 1.60920 1.21746 1.15863 0.81353 0.79387 0.83118 1.90864 1.85154 1.45686 1.21255 1.43892 1.06155 1.53434 1.22652 1.17299 0.80421 0.98780 0.96071 1.21512 0.98729 1.03619 0.98175 1.21079 0.90598 0.96520 0.98508 1.21468 1.00955 1.04330 0.98546 1.19128 0.87742 0.92264 0.91455 1.83539 1.14469 1.69651 1.46951 1.20758 0.79745 1.43162 1.04146 0.89424 1.25196 0.93180 0.97012 1.02845 1.69713 0.98290 1.47170 1.40443 0.85323 0.78515 0.79129 0.78432 1.19002 1.18623 1.19325 1.20261 0.89000 1.09291 1.05068 1.21908 0.92979 0.75550 0.79594 1.90745 1.60052 1.44176 1.39507 0.91440 0.89947 0.90970 0.88939 0.91708 0.89265 0.86103 0.91919 0.69349 0.81890 0.82501 0.85802 0.90379 0.84357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.41 71.98 0.68 0.03 16 2 C -0.12 -1.33 5.30 30.59 0.16 -1.17 16 3 C 0.14 2.09 1.01 2.99 0.00 2.09 16 4 C -0.15 -1.42 8.62 71.98 0.62 -0.80 16 5 N -0.69 -10.18 5.62 -439.80 -2.47 -12.66 16 6 C 0.70 18.28 8.54 179.44 1.53 19.81 16 7 O -0.55 -17.22 14.66 -3.80 -0.06 -17.27 16 8 N -0.52 -16.31 2.83 -594.82 -1.68 -17.99 16 9 C 0.17 6.41 6.56 38.07 0.25 6.66 16 10 C -0.20 -7.36 9.25 22.42 0.21 -7.15 16 11 C -0.05 -1.80 10.03 22.23 0.22 -1.58 16 12 C -0.23 -10.61 9.13 22.41 0.20 -10.40 16 13 C 0.14 7.25 6.64 22.56 0.15 7.40 16 14 O -0.24 -13.62 8.58 -22.70 -0.19 -13.81 16 15 C -0.40 -24.10 9.90 67.92 0.67 -23.42 16 16 H 0.09 5.40 5.53 -2.91 -0.02 5.39 16 17 C 0.02 1.00 5.49 84.84 0.47 1.47 16 18 N -0.92 -54.88 13.96 21.62 0.30 -54.58 16 19 Si 0.96 46.63 28.62 68.60 1.96 48.59 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 23 C -0.22 -9.68 9.26 22.50 0.21 -9.47 16 24 C 0.51 14.12 6.85 87.94 0.60 14.72 16 25 O -0.48 -16.30 15.06 -2.88 -0.04 -16.34 16 26 H 0.07 0.18 7.40 -2.39 -0.02 0.17 16 27 H 0.08 0.12 6.42 -2.39 -0.02 0.10 16 28 H 0.07 0.30 8.14 -2.38 -0.02 0.28 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.12 0.31 6.37 -2.39 -0.02 0.29 16 33 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.46 3.50 8.40 -92.71 -0.78 2.72 16 35 H 0.16 5.64 5.18 -2.91 -0.02 5.62 16 36 H 0.16 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.12 5.94 5.71 -2.91 -0.02 5.92 16 38 H 0.29 15.70 8.31 -92.70 -0.77 14.93 16 39 H 0.14 6.40 5.36 -2.91 -0.02 6.39 16 Total: -1.00 -75.29 324.10 4.13 -71.15 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: 0.34 Total: 14.74 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: 5.98 Total: -1.83 kcal Atomic # 7 Polarization: -81.38 SS G_CDS: -3.85 Total: -85.23 kcal Atomic # 8 Polarization: -47.13 SS G_CDS: -0.29 Total: -47.43 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 1.96 Total: 48.59 kcal Total: -75.29 4.13 -71.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000771880098.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.114 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds