Wall clock time and date at job start Fri Apr 10 2020 21:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35669 * 117.00333 * 2 1 4 4 C 1.38781 * 119.64212 * 180.02562 * 3 2 1 5 5 C 1.38590 * 119.27585 * 180.30493 * 4 3 2 6 6 C 1.50700 * 120.71399 * 179.72502 * 5 4 3 7 7 F 1.39896 * 109.47313 * 359.97438 * 6 5 4 8 8 F 1.39902 * 109.46830 * 119.99490 * 6 5 4 9 9 F 1.39899 * 109.46894 * 239.99073 * 6 5 4 10 10 C 1.38498 * 118.56398 * 359.45282 * 5 4 3 11 11 C 1.38982 * 119.22801 * 0.54318 * 10 5 4 12 12 N 1.38997 * 119.67242 * 179.70025 * 11 10 5 13 13 C 1.46505 * 119.99906 * 0.02592 * 12 11 10 14 14 C 1.53000 * 109.46984 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47186 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47270 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99924 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00109 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00246 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99809 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47473 * 89.99729 * 20 18 16 22 22 H 1.48504 * 109.46857 * 209.99568 * 20 18 16 23 23 H 1.48495 * 109.47283 * 329.99114 * 20 18 16 24 24 N 1.32325 * 119.63504 * 0.02773 * 3 2 1 25 25 H 1.09002 * 109.47219 * 299.99497 * 1 2 3 26 26 H 1.08995 * 109.47759 * 59.99650 * 1 2 3 27 27 H 1.09005 * 109.47584 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.35859 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.38731 * 180.25284 * 10 5 4 30 30 H 0.96997 * 119.99933 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46577 * 299.99772 * 13 12 11 32 32 H 1.09000 * 109.47207 * 59.99829 * 13 12 11 33 33 H 1.09005 * 109.46526 * 299.99750 * 14 13 12 34 34 H 1.08998 * 109.47049 * 59.99616 * 14 13 12 35 35 H 1.08999 * 109.47050 * 300.00065 * 15 14 13 36 36 H 1.09008 * 109.46918 * 59.99749 * 15 14 13 37 37 H 0.96991 * 120.00511 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4313 1.2727 -0.0005 5 6 4.0526 2.5115 0.0059 6 6 5.5558 2.6186 0.0117 7 9 6.1148 1.3361 0.0100 8 9 5.9782 3.3133 -1.1268 9 9 5.9699 3.3059 1.1578 10 6 3.2623 3.6488 0.0011 11 6 1.8790 3.5139 0.0015 12 7 1.0770 4.6491 0.0030 13 6 1.6906 5.9795 0.0035 14 6 0.5943 7.0467 0.0058 15 6 1.2350 8.4360 0.0071 16 6 0.1551 9.4872 0.0087 17 1 -0.8842 9.1937 0.0093 18 6 0.4941 10.8237 0.0106 19 7 -0.4482 11.7411 0.0125 20 14 2.2918 11.3314 0.0103 21 1 2.7674 11.4680 -1.3898 22 1 2.4390 12.6318 0.7122 23 1 3.0980 10.2981 0.7084 24 7 1.3173 2.3140 0.0006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0195 0.3669 -0.0014 29 1 3.7156 4.6291 0.0017 30 1 0.1111 4.5605 0.0036 31 1 2.3100 6.0935 0.8932 32 1 2.3087 6.0949 -0.8868 33 1 -0.0255 6.9328 -0.8836 34 1 -0.0235 6.9311 0.8964 35 1 1.8545 8.5496 0.8967 36 1 1.8530 8.5519 -0.8834 37 1 -0.2099 12.6812 0.0134 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168427921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:18:20 Heat of formation + Delta-G solvation = -156.668453 kcal Electronic energy + Delta-G solvation = -24270.084695 eV Core-core repulsion = 20018.793194 eV Total energy + Delta-G solvation = -4251.291501 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.39331 -47.91008 -47.84643 -40.96024 -38.59031 -36.42498 -33.99923 -33.11609 -31.69958 -29.85070 -27.67647 -26.99398 -26.53014 -23.82630 -22.42328 -22.05678 -20.46656 -19.17287 -18.80363 -18.71266 -17.70222 -16.82236 -16.73040 -16.30995 -16.14035 -15.69339 -15.21410 -14.95230 -14.74156 -14.61348 -14.28082 -14.24367 -14.00835 -14.00073 -13.89326 -13.86321 -12.77841 -12.66248 -12.53682 -12.49468 -12.07137 -11.99217 -11.56803 -11.18383 -11.01248 -10.67401 -10.18376 -10.09037 -9.96275 -9.79448 -9.44507 -9.31411 -8.62198 -7.85273 -6.12323 -4.11904 0.64853 1.08038 2.23669 2.75950 3.00547 3.25627 3.33899 3.35619 3.41633 3.43571 3.84039 4.16607 4.37862 4.46708 4.71366 4.80534 5.00152 5.05979 5.08434 5.21066 5.26101 5.36058 5.40798 5.44542 5.72060 5.76960 5.79999 6.27445 6.27978 6.63757 6.78875 6.85765 7.11198 7.24798 7.40148 7.68260 7.81420 8.43331 8.91338 9.49144 11.00921 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003364 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.036208 B = 8320.768664 C =10022.094465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.303 6.303 3 C 0.375 3.625 4 C -0.220 4.220 5 C -0.062 4.062 6 C 0.514 3.486 7 F -0.173 7.173 8 F -0.171 7.171 9 F -0.171 7.171 10 C -0.229 4.229 11 C 0.453 3.547 12 N -0.707 5.707 13 C 0.115 3.885 14 C -0.113 4.113 15 C -0.010 4.010 16 C -0.525 4.525 17 H 0.072 0.928 18 C 0.067 3.933 19 N -0.901 5.901 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.265 1.265 24 N -0.583 5.583 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.409 0.591 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.019 0.981 36 H 0.015 0.985 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.465 -23.619 0.002 25.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.210 6.210 3 C 0.195 3.805 4 C -0.243 4.243 5 C -0.071 4.071 6 C 0.459 3.541 7 F -0.155 7.155 8 F -0.152 7.152 9 F -0.152 7.152 10 C -0.255 4.255 11 C 0.214 3.786 12 N -0.337 5.337 13 C -0.008 4.008 14 C -0.151 4.151 15 C -0.048 4.048 16 C -0.563 4.563 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.540 5.540 20 Si 0.707 3.293 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.189 1.189 24 N -0.317 5.317 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.115 0.885 28 H 0.168 0.832 29 H 0.165 0.835 30 H 0.245 0.755 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.033 0.967 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.767 -23.532 0.006 24.781 hybrid contribution 1.295 0.627 -0.019 1.439 sum 9.063 -22.905 -0.013 24.632 Atomic orbital electron populations 1.22898 0.76808 1.03039 1.02819 1.86249 1.23246 1.24018 1.87443 1.19100 0.88298 0.83843 0.89309 1.20318 0.92366 0.97866 1.13773 1.19703 0.91100 0.94850 1.01403 1.18061 0.87947 0.73876 0.74177 1.93183 1.87077 1.38996 1.96212 1.93247 1.91454 1.79430 1.51072 1.93246 1.91676 1.79791 1.50489 1.20966 0.92646 0.99249 1.12624 1.17716 0.87477 0.85439 0.87926 1.44948 1.08835 1.02544 1.77340 1.21882 0.97745 0.79657 1.01515 1.21692 0.96606 0.94581 1.02181 1.19502 0.97027 0.91592 0.96669 1.21068 0.93922 0.89867 1.51403 0.90992 1.25032 0.97377 0.96625 0.94402 1.69901 1.32612 1.00787 1.50702 0.86775 0.85760 0.78142 0.78590 1.20205 1.21311 1.18930 1.66699 1.40773 0.97625 1.26558 0.92045 0.92053 0.88507 0.83183 0.83528 0.75479 0.91608 0.91606 0.91836 0.91813 0.96251 0.96688 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.32 10.38 101.05 1.05 1.37 16 2 O -0.30 -3.27 10.47 -18.71 -0.20 -3.47 16 3 C 0.38 4.54 7.48 -17.14 -0.13 4.42 16 4 C -0.22 -2.47 9.42 -39.25 -0.37 -2.84 16 5 C -0.06 -0.71 5.39 -104.40 -0.56 -1.28 16 6 C 0.51 5.63 3.34 36.01 0.12 5.75 16 7 F -0.17 -1.80 16.07 2.25 0.04 -1.77 16 8 F -0.17 -1.96 17.25 2.25 0.04 -1.92 16 9 F -0.17 -1.96 17.25 2.25 0.04 -1.92 16 10 C -0.23 -2.82 8.94 -39.21 -0.35 -3.17 16 11 C 0.45 5.89 7.65 -155.00 -1.19 4.71 16 12 N -0.71 -9.01 5.73 -60.44 -0.35 -9.36 16 13 C 0.12 1.59 4.89 -4.04 -0.02 1.57 16 14 C -0.11 -1.93 5.27 -26.74 -0.14 -2.08 16 15 C -0.01 -0.22 4.04 -27.89 -0.11 -0.33 16 16 C -0.52 -14.31 9.66 -34.44 -0.33 -14.65 16 17 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 18 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 19 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 20 Si 0.88 20.99 27.47 -169.99 -4.67 16.32 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -5.99 6.54 56.52 0.37 -5.62 16 24 N -0.58 -7.51 9.24 -12.51 -0.12 -7.63 16 25 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 26 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 27 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.15 1.43 7.25 -52.49 -0.38 1.05 16 29 H 0.15 1.70 6.69 -52.48 -0.35 1.34 16 30 H 0.41 4.91 8.60 -40.82 -0.35 4.56 16 31 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 32 H 0.07 0.88 7.92 -51.93 -0.41 0.47 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.02 0.42 7.20 -51.93 -0.37 0.05 16 36 H 0.01 0.32 7.57 -51.92 -0.39 -0.07 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 330.22 15.07 4.98 4.98 Total: -1.00 -29.80 330.22 -5.96 -35.76 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -4.37 Total: 0.15 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.13 Total: -4.73 kcal Atomic # 7 Polarization: -43.72 SS G_CDS: 0.31 Total: -43.41 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.20 Total: -3.47 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.11 Total: -5.61 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.67 Total: 16.32 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.80 -5.96 -35.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.905 kcal (2) G-P(sol) polarization free energy of solvation -29.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds