Wall clock time and date at job start Fri Apr 10 2020 21:18:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35669 * 117.00333 * 2 1 4 4 C 1.38781 * 119.64212 * 180.02562 * 3 2 1 5 5 C 1.38590 * 119.27585 * 180.30493 * 4 3 2 6 6 C 1.50700 * 120.71399 * 179.72502 * 5 4 3 7 7 F 1.39896 * 109.47313 * 359.97438 * 6 5 4 8 8 F 1.39902 * 109.46830 * 119.99490 * 6 5 4 9 9 F 1.39899 * 109.46894 * 239.99073 * 6 5 4 10 10 C 1.38498 * 118.56398 * 359.45282 * 5 4 3 11 11 C 1.38982 * 119.22801 * 0.54318 * 10 5 4 12 12 N 1.38997 * 119.67242 * 179.70025 * 11 10 5 13 13 C 1.46505 * 119.99906 * 0.02592 * 12 11 10 14 14 C 1.53000 * 109.46984 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47186 * 179.97438 * 14 13 12 16 16 C 1.50699 * 109.47270 * 179.97438 * 15 14 13 17 17 H 1.07995 * 119.99924 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00109 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00246 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 119.99809 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47473 * 89.99729 * 20 18 16 22 22 H 1.48504 * 109.46857 * 209.99568 * 20 18 16 23 23 H 1.48495 * 109.47283 * 329.99114 * 20 18 16 24 24 N 1.32325 * 119.63504 * 0.02773 * 3 2 1 25 25 H 1.09002 * 109.47219 * 299.99497 * 1 2 3 26 26 H 1.08995 * 109.47759 * 59.99650 * 1 2 3 27 27 H 1.09005 * 109.47584 * 179.97438 * 1 2 3 28 28 H 1.08002 * 120.35859 * 0.02562 * 4 3 2 29 29 H 1.08009 * 120.38731 * 180.25284 * 10 5 4 30 30 H 0.96997 * 119.99933 * 180.02562 * 12 11 10 31 31 H 1.09002 * 109.46577 * 299.99772 * 13 12 11 32 32 H 1.09000 * 109.47207 * 59.99829 * 13 12 11 33 33 H 1.09005 * 109.46526 * 299.99750 * 14 13 12 34 34 H 1.08998 * 109.47049 * 59.99616 * 14 13 12 35 35 H 1.08999 * 109.47050 * 300.00065 * 15 14 13 36 36 H 1.09008 * 109.46918 * 59.99749 * 15 14 13 37 37 H 0.96991 * 120.00511 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2088 0.0000 4 6 3.4313 1.2727 -0.0005 5 6 4.0526 2.5115 0.0059 6 6 5.5558 2.6186 0.0117 7 9 6.1148 1.3361 0.0100 8 9 5.9782 3.3133 -1.1268 9 9 5.9699 3.3059 1.1578 10 6 3.2623 3.6488 0.0011 11 6 1.8790 3.5139 0.0015 12 7 1.0770 4.6491 0.0030 13 6 1.6906 5.9795 0.0035 14 6 0.5943 7.0467 0.0058 15 6 1.2350 8.4360 0.0071 16 6 0.1551 9.4872 0.0087 17 1 -0.8842 9.1937 0.0093 18 6 0.4941 10.8237 0.0106 19 7 -0.4482 11.7411 0.0125 20 14 2.2918 11.3314 0.0103 21 1 2.7674 11.4680 -1.3898 22 1 2.4390 12.6318 0.7122 23 1 3.0980 10.2981 0.7084 24 7 1.3173 2.3140 0.0006 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 4.0195 0.3669 -0.0014 29 1 3.7156 4.6291 0.0017 30 1 0.1111 4.5605 0.0036 31 1 2.3100 6.0935 0.8932 32 1 2.3087 6.0949 -0.8868 33 1 -0.0255 6.9328 -0.8836 34 1 -0.0235 6.9311 0.8964 35 1 1.8545 8.5496 0.8967 36 1 1.8530 8.5519 -0.8834 37 1 -0.2099 12.6812 0.0134 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168427921.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:18:20 Heat of formation + Delta-G solvation = -175.843907 kcal Electronic energy + Delta-G solvation = -24270.916205 eV Core-core repulsion = 20018.793194 eV Total energy + Delta-G solvation = -4252.123011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 304.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -51.25071 -48.75311 -48.71812 -41.85575 -39.45130 -37.54051 -35.52269 -34.36013 -33.30669 -30.90980 -28.79060 -28.20327 -27.34044 -25.18573 -23.44813 -23.14438 -21.98572 -20.08060 -19.68483 -19.57276 -18.98542 -18.46357 -17.64483 -17.14124 -17.02433 -16.72516 -16.39944 -16.27614 -15.75126 -15.61205 -15.43493 -15.13659 -14.91547 -14.88679 -14.85439 -14.85223 -14.74322 -13.83729 -13.76279 -13.45725 -13.42639 -12.82058 -12.76979 -12.60625 -12.33942 -11.85544 -11.73922 -11.68879 -11.46721 -11.32526 -10.98604 -10.75071 -10.37736 -8.79280 -8.28122 -6.32858 -0.25697 0.16198 1.37184 1.39629 1.41351 1.52608 1.85680 2.12682 2.38080 2.49355 2.57035 2.99473 3.08103 3.30459 3.56964 3.80125 3.92823 4.04981 4.16341 4.20073 4.40086 4.44380 4.51177 4.54305 4.76206 4.82068 4.88156 4.89193 5.00286 5.03248 5.46856 5.57452 5.65559 5.79890 6.00620 6.28476 6.45472 6.76208 6.86604 7.32149 8.88669 Molecular weight = 304.11amu Principal moments of inertia in cm(-1) A = 0.014756 B = 0.003364 C = 0.002793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.036208 B = 8320.768664 C =10022.094465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.308 6.308 3 C 0.365 3.635 4 C -0.215 4.215 5 C -0.063 4.063 6 C 0.520 3.480 7 F -0.169 7.169 8 F -0.173 7.173 9 F -0.173 7.173 10 C -0.236 4.236 11 C 0.442 3.558 12 N -0.708 5.708 13 C 0.129 3.871 14 C -0.103 4.103 15 C -0.010 4.010 16 C -0.534 4.534 17 H 0.031 0.969 18 C 0.001 3.999 19 N -0.954 5.954 20 Si 0.951 3.049 21 H -0.267 1.267 22 H -0.289 1.289 23 H -0.239 1.239 24 N -0.592 5.592 25 H 0.057 0.943 26 H 0.057 0.943 27 H 0.127 0.873 28 H 0.167 0.833 29 H 0.154 0.846 30 H 0.411 0.589 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.026 0.974 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -25.233 -0.001 27.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.214 6.214 3 C 0.185 3.815 4 C -0.238 4.238 5 C -0.072 4.072 6 C 0.466 3.534 7 F -0.150 7.150 8 F -0.154 7.154 9 F -0.154 7.154 10 C -0.261 4.261 11 C 0.204 3.796 12 N -0.338 5.338 13 C 0.006 3.994 14 C -0.141 4.141 15 C -0.048 4.048 16 C -0.572 4.572 17 H 0.049 0.951 18 C -0.195 4.195 19 N -0.595 5.595 20 Si 0.774 3.226 21 H -0.192 1.192 22 H -0.215 1.215 23 H -0.162 1.162 24 N -0.326 5.326 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.145 0.855 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.247 0.753 31 H 0.093 0.907 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.046 0.954 36 H 0.044 0.956 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.910 -25.193 0.003 27.072 hybrid contribution 0.507 1.028 -0.020 1.146 sum 10.417 -24.165 -0.018 26.315 Atomic orbital electron populations 1.23104 0.75462 1.04918 1.02380 1.86254 1.24580 1.23338 1.87219 1.19327 0.88783 0.84040 0.89398 1.20545 0.92295 0.98439 1.12562 1.19777 0.91400 0.94837 1.01211 1.17921 0.87582 0.73942 0.73978 1.93193 1.86976 1.38680 1.96179 1.93244 1.91448 1.79528 1.51214 1.93243 1.91671 1.79889 1.50640 1.21076 0.92436 0.99883 1.12725 1.17784 0.87776 0.85425 0.88597 1.44753 1.08921 1.02192 1.77959 1.21604 0.96257 0.79080 1.02475 1.21457 0.97340 0.93477 1.01793 1.19457 0.95666 0.92383 0.97302 1.21501 0.93763 0.91575 1.50336 0.95051 1.26060 1.02631 0.96699 0.94145 1.70070 1.35394 1.01268 1.52751 0.85647 0.79633 0.78090 0.79229 1.19196 1.21477 1.16219 1.66669 1.41288 0.97863 1.26746 0.92465 0.92470 0.85534 0.81567 0.82800 0.75272 0.90702 0.90630 0.92325 0.92339 0.95437 0.95572 0.92569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 113.37 1.18 1.70 16 2 O -0.31 -6.12 10.47 -89.86 -0.94 -7.06 16 3 C 0.37 8.26 7.48 84.75 0.63 8.90 16 4 C -0.22 -4.40 9.42 22.48 0.21 -4.19 16 5 C -0.06 -1.34 5.39 -19.72 -0.11 -1.44 16 6 C 0.52 10.29 3.34 71.24 0.24 10.53 16 7 F -0.17 -3.14 16.07 44.97 0.72 -2.42 16 8 F -0.17 -3.61 17.25 44.97 0.78 -2.83 16 9 F -0.17 -3.62 17.25 44.97 0.78 -2.84 16 10 C -0.24 -5.33 8.94 22.51 0.20 -5.13 16 11 C 0.44 10.80 7.65 133.00 1.02 11.81 16 12 N -0.71 -16.97 5.73 -345.13 -1.98 -18.95 16 13 C 0.13 3.29 4.89 86.38 0.42 3.71 16 14 C -0.10 -3.42 5.27 30.59 0.16 -3.26 16 15 C -0.01 -0.43 4.04 29.85 0.12 -0.31 16 16 C -0.53 -29.54 9.66 25.60 0.25 -29.29 16 17 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 18 C 0.00 0.07 5.47 84.66 0.46 0.53 16 19 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 20 Si 0.95 42.60 27.47 68.60 1.88 44.48 16 21 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 24 N -0.59 -14.47 9.24 -306.33 -2.83 -17.30 16 25 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 26 H 0.06 0.88 8.10 -2.39 -0.02 0.86 16 27 H 0.13 1.04 8.14 -2.38 -0.02 1.02 16 28 H 0.17 2.77 7.25 -2.91 -0.02 2.75 16 29 H 0.15 3.18 6.69 -2.91 -0.02 3.16 16 30 H 0.41 9.46 8.60 -92.71 -0.80 8.67 16 31 H 0.07 1.80 7.92 -2.39 -0.02 1.78 16 32 H 0.08 1.80 7.92 -2.39 -0.02 1.79 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.03 1.13 7.20 -2.39 -0.02 1.11 16 36 H 0.03 1.06 7.57 -2.38 -0.02 1.04 16 37 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -64.46 330.22 3.76 -60.70 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 0.26 Total: 11.48 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: 4.79 Total: -6.45 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -4.51 Total: -95.06 kcal Atomic # 8 Polarization: -6.12 SS G_CDS: -0.94 Total: -7.06 kcal Atomic # 9 Polarization: -10.37 SS G_CDS: 2.27 Total: -8.09 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -64.46 3.76 -60.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168427921.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.143 kcal (2) G-P(sol) polarization free energy of solvation -64.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds