Wall clock time and date at job start Fri Apr 10 2020 21:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38817 * 120.42033 * 2 1 4 4 C 1.38786 * 118.50507 * 179.97438 * 3 2 1 5 5 N 1.32117 * 119.16553 * 359.97438 * 4 3 2 6 6 C 1.32445 * 120.77105 * 0.02562 * 5 4 3 7 7 C 1.48538 * 119.18683 * 179.97438 * 6 5 4 8 8 O 1.21470 * 120.00352 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99892 * 0.02562 * 7 6 5 10 10 C 1.46507 * 119.99870 * 179.72509 * 9 7 6 11 11 H 1.08999 * 108.44741 * 327.57625 * 10 9 7 12 12 C 1.52572 * 108.51041 * 210.04085 * 10 9 7 13 13 C 1.50878 * 109.35697 * 153.73528 * 12 10 9 14 14 C 1.53942 * 110.09806 * 91.88543 * 13 12 10 15 15 N 1.47606 * 112.14132 * 319.43323 * 14 13 12 16 16 C 1.36942 * 118.64343 * 137.84536 * 15 14 13 17 17 H 1.08001 * 119.99675 * 206.52046 * 16 15 14 18 18 C 1.38803 * 119.99686 * 26.52383 * 16 15 14 19 19 N 1.31622 * 120.00687 * 15.67689 * 18 16 15 20 20 Si 1.86803 * 119.99680 * 195.67370 * 18 16 15 21 21 H 1.48507 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47250 * 120.00133 * 20 18 16 23 23 H 1.48508 * 109.47316 * 240.00216 * 20 18 16 24 24 C 1.44574 * 122.71112 * 317.86986 * 15 14 13 25 25 C 1.47083 * 108.51342 * 85.27414 * 10 9 7 26 26 N 1.32104 * 120.41684 * 180.26809 * 2 1 3 27 27 H 1.09004 * 109.47090 * 90.00524 * 1 2 3 28 28 H 1.09007 * 109.47387 * 210.00101 * 1 2 3 29 29 H 1.08998 * 109.47389 * 330.00336 * 1 2 3 30 30 H 1.07994 * 120.74799 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.41239 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00243 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.48923 * 273.69935 * 12 10 9 34 34 H 1.09005 * 109.48889 * 33.76408 * 12 10 9 35 35 H 1.08997 * 109.36800 * 331.68878 * 13 12 10 36 36 H 1.09007 * 109.26137 * 212.01282 * 13 12 10 37 37 H 1.08999 * 108.94819 * 198.75177 * 14 13 12 38 38 H 1.08998 * 108.95031 * 80.11930 * 14 13 12 39 39 H 0.96999 * 120.00021 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.45095 * 330.68682 * 24 15 14 41 41 H 1.09000 * 109.45210 * 210.76397 * 24 15 14 42 42 H 1.09007 * 109.32930 * 304.31572 * 25 10 9 43 43 H 1.09001 * 109.33096 * 63.79511 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5969 1.1507 0.0005 5 7 4.2018 -0.0239 0.0016 6 6 3.5004 -1.1473 0.0015 7 6 4.2168 -2.4485 0.0021 8 8 3.5882 -3.4880 0.0026 9 7 5.5643 -2.4759 0.0032 10 6 6.2709 -3.7593 0.0098 11 1 5.6722 -4.4797 0.5673 12 6 7.6011 -3.5762 0.7342 13 6 8.0371 -4.8961 1.3206 14 6 8.9367 -5.6472 0.3224 15 7 8.4475 -5.5290 -1.0653 16 6 9.3568 -5.3092 -2.0653 17 1 9.0519 -4.8073 -2.9717 18 6 10.6703 -5.7316 -1.9141 19 7 10.9785 -6.5996 -0.9738 20 14 12.0008 -5.0683 -3.0452 21 1 11.3990 -4.1140 -4.0109 22 1 13.0343 -4.3712 -2.2383 23 1 12.6266 -6.1929 -3.7862 24 6 7.0480 -5.6350 -1.4120 25 6 6.3964 -4.2306 -1.3778 26 7 2.1758 -1.1392 -0.0053 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6890 2.1431 -0.0004 31 1 4.1745 2.0633 0.0010 32 1 6.0663 -1.6459 0.0032 33 1 8.3541 -3.2253 0.0285 34 1 7.4823 -2.8445 1.5334 35 1 7.1581 -5.5015 1.5415 36 1 8.5917 -4.7149 2.2414 37 1 8.9680 -6.7013 0.5979 38 1 9.9455 -5.2384 0.3780 39 1 11.8964 -6.8950 -0.8685 40 1 6.5451 -6.2859 -0.6968 41 1 6.9530 -6.0549 -2.4134 42 1 5.4071 -4.2807 -1.8327 43 1 7.0149 -3.5321 -1.9415 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052337708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:24:01 Heat of formation + Delta-G solvation = 37.735654 kcal Electronic energy + Delta-G solvation = -24850.319894 eV Core-core repulsion = 21317.440974 eV Total energy + Delta-G solvation = -3532.878920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51464 -39.59802 -37.55927 -35.07192 -34.61937 -32.98244 -32.36268 -31.57238 -30.07032 -28.86337 -26.36376 -25.48672 -23.90448 -23.46999 -23.09658 -20.75382 -20.11205 -19.21531 -18.00041 -17.88812 -16.62402 -16.20119 -15.85888 -15.68807 -15.18623 -15.00011 -14.40170 -14.06115 -13.88920 -13.65630 -13.53025 -13.38466 -13.19468 -12.76174 -12.71313 -12.46456 -11.93170 -11.52667 -11.36887 -11.21801 -10.95029 -10.83515 -10.67062 -10.42639 -10.23923 -10.08744 -9.95026 -9.92094 -9.73257 -9.69568 -9.61973 -9.55474 -8.80311 -8.36073 -6.61696 -5.73934 -3.17298 0.19097 0.71171 2.61145 2.79475 3.38717 3.47078 3.49009 3.64714 3.65698 3.99042 4.11898 4.53517 4.54053 4.62850 4.91445 5.02652 5.11493 5.21583 5.33476 5.38684 5.50435 5.51024 5.66172 5.77563 5.93989 6.06524 6.09723 6.21528 6.37307 6.50869 6.54384 6.59909 6.68600 6.80222 6.82987 6.88355 6.95898 7.09189 7.46057 7.48698 7.75519 7.80444 7.87364 8.27750 8.51803 9.28881 9.95919 10.41117 11.33464 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.003049 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.483957 B = 9182.576306 C = 9519.284582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.215 4.215 4 C 0.148 3.852 5 N -0.499 5.499 6 C 0.294 3.706 7 C 0.578 3.422 8 O -0.507 6.507 9 N -0.702 5.702 10 C 0.161 3.839 11 H 0.077 0.923 12 C -0.111 4.111 13 C -0.140 4.140 14 C 0.177 3.823 15 N -0.591 5.591 16 C -0.255 4.255 17 H 0.065 0.935 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.899 3.101 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.163 3.837 25 C -0.156 4.156 26 N -0.471 5.471 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.152 0.848 31 H 0.176 0.824 32 H 0.407 0.593 33 H 0.082 0.918 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.057 0.943 37 H 0.025 0.975 38 H 0.075 0.925 39 H 0.252 0.748 40 H 0.035 0.965 41 H 0.049 0.951 42 H 0.053 0.947 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.664 17.310 4.486 24.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.024 3.976 3 C -0.237 4.237 4 C -0.018 4.018 5 N -0.216 5.216 6 C 0.024 3.976 7 C 0.358 3.642 8 O -0.380 6.380 9 N -0.354 5.354 10 C 0.059 3.941 11 H 0.095 0.905 12 C -0.150 4.150 13 C -0.180 4.180 14 C 0.052 3.948 15 N -0.312 5.312 16 C -0.385 4.385 17 H 0.083 0.917 18 C -0.195 4.195 19 N -0.549 5.549 20 Si 0.729 3.271 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.218 1.218 24 C 0.034 3.966 25 C -0.197 4.197 26 N -0.187 5.187 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.101 0.899 30 H 0.170 0.830 31 H 0.193 0.807 32 H 0.242 0.758 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.043 0.957 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.468 15.522 4.539 23.081 hybrid contribution 0.554 1.811 -0.593 1.984 sum -15.914 17.333 3.946 23.859 Atomic orbital electron populations 1.20821 0.87268 1.04359 1.04009 1.21907 0.98015 0.87833 0.89881 1.23000 0.96681 1.00672 1.03392 1.23309 0.92210 0.96068 0.90177 1.68331 1.41621 0.98848 1.12830 1.23129 0.87411 0.93238 0.93817 1.17267 0.82753 0.85701 0.78482 1.90804 1.66842 1.31966 1.48364 1.46338 1.04977 1.11426 1.72611 1.20160 0.92738 0.83078 0.98131 0.90481 1.21255 0.96046 0.98419 0.99233 1.21983 1.00501 0.95989 0.99516 1.21028 0.95822 0.96585 0.81357 1.43696 1.00911 1.83667 1.02933 1.19251 0.90243 1.30901 0.98093 0.91702 1.25023 0.98717 0.97267 0.98493 1.70082 1.17972 1.31561 1.35272 0.86278 0.82204 0.78387 0.80224 1.20333 1.21663 1.21820 1.20562 0.85662 0.91737 0.98634 1.21894 1.00364 1.02150 0.95312 1.68134 1.08709 1.30368 1.11442 0.89374 0.89523 0.89887 0.83004 0.80698 0.75778 0.89926 0.92999 0.93326 0.92471 0.95662 0.90672 0.93790 0.94681 0.93232 0.92871 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.64 10.22 36.00 0.37 -0.27 16 2 C 0.17 1.65 6.82 -82.26 -0.56 1.08 16 3 C -0.22 -1.52 9.87 -39.16 -0.39 -1.90 16 4 C 0.15 1.21 11.30 -17.23 -0.19 1.02 16 5 N -0.50 -6.01 9.57 -11.12 -0.11 -6.11 16 6 C 0.29 4.31 7.59 -157.08 -1.19 3.12 16 7 C 0.58 9.78 7.71 -12.01 -0.09 9.69 16 8 O -0.51 -10.22 16.38 5.39 0.09 -10.14 16 9 N -0.70 -10.95 4.87 -57.54 -0.28 -11.23 16 10 C 0.16 2.81 1.96 -70.99 -0.14 2.67 16 11 H 0.08 1.45 6.64 -51.93 -0.34 1.11 16 12 C -0.11 -1.92 5.00 -28.02 -0.14 -2.06 16 13 C -0.14 -2.62 5.71 -27.31 -0.16 -2.77 16 14 C 0.18 4.16 4.67 -2.95 -0.01 4.14 16 15 N -0.59 -14.46 2.27 -172.09 -0.39 -14.85 16 16 C -0.25 -6.87 9.44 -15.06 -0.14 -7.01 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.09 4.87 -17.43 -0.08 0.01 16 19 N -0.90 -26.00 11.01 55.49 0.61 -25.39 16 20 Si 0.90 21.60 29.58 -169.99 -5.03 16.57 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 C 0.16 3.51 5.65 -4.09 -0.02 3.48 16 25 C -0.16 -2.96 5.20 -28.59 -0.15 -3.11 16 26 N -0.47 -6.61 10.07 -7.38 -0.07 -6.69 16 27 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.08 0.27 8.10 -51.93 -0.42 -0.15 16 30 H 0.15 0.48 8.06 -52.49 -0.42 0.05 16 31 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.41 5.62 7.92 -40.82 -0.32 5.29 16 33 H 0.08 1.59 7.48 -51.93 -0.39 1.20 16 34 H 0.05 0.78 8.05 -51.93 -0.42 0.36 16 35 H 0.05 0.88 7.31 -51.93 -0.38 0.50 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 38 H 0.07 1.95 6.33 -51.93 -0.33 1.62 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 41 H 0.05 1.09 7.99 -51.93 -0.41 0.67 16 42 H 0.05 1.01 7.98 -51.93 -0.41 0.60 16 43 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 LS Contribution 349.85 15.07 5.27 5.27 Total: -1.00 -33.00 349.85 -9.17 -42.17 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -6.35 Total: 2.31 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -2.91 Total: 8.09 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: -0.24 Total: -64.28 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.00 -9.17 -42.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052337708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.906 kcal (2) G-P(sol) polarization free energy of solvation -33.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds