Wall clock time and date at job start Fri Apr 10 2020 21:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38817 * 120.42033 * 2 1 4 4 C 1.38786 * 118.50507 * 179.97438 * 3 2 1 5 5 N 1.32117 * 119.16553 * 359.97438 * 4 3 2 6 6 C 1.32445 * 120.77105 * 0.02562 * 5 4 3 7 7 C 1.48538 * 119.18683 * 179.97438 * 6 5 4 8 8 O 1.21470 * 120.00352 * 179.97438 * 7 6 5 9 9 N 1.34779 * 119.99892 * 0.02562 * 7 6 5 10 10 C 1.46507 * 119.99870 * 179.72509 * 9 7 6 11 11 H 1.08999 * 108.44741 * 327.57625 * 10 9 7 12 12 C 1.52572 * 108.51041 * 210.04085 * 10 9 7 13 13 C 1.50878 * 109.35697 * 153.73528 * 12 10 9 14 14 C 1.53942 * 110.09806 * 91.88543 * 13 12 10 15 15 N 1.47606 * 112.14132 * 319.43323 * 14 13 12 16 16 C 1.36942 * 118.64343 * 137.84536 * 15 14 13 17 17 H 1.08001 * 119.99675 * 206.52046 * 16 15 14 18 18 C 1.38803 * 119.99686 * 26.52383 * 16 15 14 19 19 N 1.31622 * 120.00687 * 15.67689 * 18 16 15 20 20 Si 1.86803 * 119.99680 * 195.67370 * 18 16 15 21 21 H 1.48507 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47250 * 120.00133 * 20 18 16 23 23 H 1.48508 * 109.47316 * 240.00216 * 20 18 16 24 24 C 1.44574 * 122.71112 * 317.86986 * 15 14 13 25 25 C 1.47083 * 108.51342 * 85.27414 * 10 9 7 26 26 N 1.32104 * 120.41684 * 180.26809 * 2 1 3 27 27 H 1.09004 * 109.47090 * 90.00524 * 1 2 3 28 28 H 1.09007 * 109.47387 * 210.00101 * 1 2 3 29 29 H 1.08998 * 109.47389 * 330.00336 * 1 2 3 30 30 H 1.07994 * 120.74799 * 359.97438 * 3 2 1 31 31 H 1.08002 * 120.41239 * 180.02562 * 4 3 2 32 32 H 0.96998 * 120.00243 * 359.97438 * 9 7 6 33 33 H 1.09001 * 109.48923 * 273.69935 * 12 10 9 34 34 H 1.09005 * 109.48889 * 33.76408 * 12 10 9 35 35 H 1.08997 * 109.36800 * 331.68878 * 13 12 10 36 36 H 1.09007 * 109.26137 * 212.01282 * 13 12 10 37 37 H 1.08999 * 108.94819 * 198.75177 * 14 13 12 38 38 H 1.08998 * 108.95031 * 80.11930 * 14 13 12 39 39 H 0.96999 * 120.00021 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.45095 * 330.68682 * 24 15 14 41 41 H 1.09000 * 109.45210 * 210.76397 * 24 15 14 42 42 H 1.09007 * 109.32930 * 304.31572 * 25 10 9 43 43 H 1.09001 * 109.33096 * 63.79511 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2098 1.1971 0.0000 4 6 3.5969 1.1507 0.0005 5 7 4.2018 -0.0239 0.0016 6 6 3.5004 -1.1473 0.0015 7 6 4.2168 -2.4485 0.0021 8 8 3.5882 -3.4880 0.0026 9 7 5.5643 -2.4759 0.0032 10 6 6.2709 -3.7593 0.0098 11 1 5.6722 -4.4797 0.5673 12 6 7.6011 -3.5762 0.7342 13 6 8.0371 -4.8961 1.3206 14 6 8.9367 -5.6472 0.3224 15 7 8.4475 -5.5290 -1.0653 16 6 9.3568 -5.3092 -2.0653 17 1 9.0519 -4.8073 -2.9717 18 6 10.6703 -5.7316 -1.9141 19 7 10.9785 -6.5996 -0.9738 20 14 12.0008 -5.0683 -3.0452 21 1 11.3990 -4.1140 -4.0109 22 1 13.0343 -4.3712 -2.2383 23 1 12.6266 -6.1929 -3.7862 24 6 7.0480 -5.6350 -1.4120 25 6 6.3964 -4.2306 -1.3778 26 7 2.1758 -1.1392 -0.0053 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3634 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6890 2.1431 -0.0004 31 1 4.1745 2.0633 0.0010 32 1 6.0663 -1.6459 0.0032 33 1 8.3541 -3.2253 0.0285 34 1 7.4823 -2.8445 1.5334 35 1 7.1581 -5.5015 1.5415 36 1 8.5917 -4.7149 2.2414 37 1 8.9680 -6.7013 0.5979 38 1 9.9455 -5.2384 0.3780 39 1 11.8964 -6.8950 -0.8685 40 1 6.5451 -6.2859 -0.6968 41 1 6.9530 -6.0549 -2.4134 42 1 5.4071 -4.2807 -1.8327 43 1 7.0149 -3.5321 -1.9415 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052337708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:24:00 Heat of formation + Delta-G solvation = 15.591559 kcal Electronic energy + Delta-G solvation = -24851.280134 eV Core-core repulsion = 21317.440974 eV Total energy + Delta-G solvation = -3533.839160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.164 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35602 -40.91316 -39.14311 -36.49897 -35.60738 -34.14251 -33.66603 -33.32404 -31.73397 -29.50634 -28.02206 -26.74768 -25.61595 -24.77560 -24.11830 -21.99615 -21.59554 -20.99850 -19.02495 -18.85530 -18.51139 -17.23368 -16.99509 -16.78559 -16.72758 -16.06894 -15.78356 -15.52448 -15.30274 -15.21010 -14.91184 -14.37475 -14.19546 -14.14653 -13.82729 -13.61801 -13.19804 -13.17411 -13.02081 -12.74005 -12.42662 -12.32578 -12.11659 -12.03615 -11.75621 -11.74217 -11.56910 -11.52529 -11.35283 -11.12467 -10.61798 -10.44211 -10.41268 -10.17045 -8.64338 -7.82873 -5.29261 -0.62935 0.03833 1.47103 1.49465 1.53689 1.59534 1.68741 2.53880 2.74819 2.86317 3.13891 3.31209 3.52205 3.65055 3.74473 3.85083 4.03589 4.08793 4.29819 4.31382 4.42955 4.44382 4.58175 4.65664 4.71150 4.75813 4.77632 4.92310 4.97887 5.05704 5.11217 5.13297 5.23050 5.29655 5.36784 5.44526 5.48258 5.59731 5.70433 5.83851 5.91074 6.32985 6.43930 6.86974 7.06002 7.21378 7.96470 8.36227 9.22618 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.026801 B = 0.003049 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.483957 B = 9182.576306 C = 9519.284582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.148 3.852 3 C -0.184 4.184 4 C 0.140 3.860 5 N -0.510 5.510 6 C 0.265 3.735 7 C 0.576 3.424 8 O -0.552 6.552 9 N -0.691 5.691 10 C 0.168 3.832 11 H 0.066 0.934 12 C -0.100 4.100 13 C -0.129 4.129 14 C 0.186 3.814 15 N -0.602 5.602 16 C -0.261 4.261 17 H 0.064 0.936 18 C -0.047 4.047 19 N -0.935 5.935 20 Si 0.963 3.037 21 H -0.268 1.268 22 H -0.289 1.289 23 H -0.295 1.295 24 C 0.161 3.839 25 C -0.137 4.137 26 N -0.509 5.509 27 H 0.097 0.903 28 H 0.070 0.930 29 H 0.118 0.882 30 H 0.202 0.798 31 H 0.218 0.782 32 H 0.417 0.583 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.054 0.946 36 H 0.079 0.921 37 H -0.006 1.006 38 H 0.047 0.953 39 H 0.249 0.751 40 H 0.038 0.962 41 H 0.040 0.960 42 H 0.051 0.949 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.915 21.143 4.724 28.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.003 3.997 3 C -0.206 4.206 4 C -0.025 4.025 5 N -0.228 5.228 6 C -0.005 4.005 7 C 0.358 3.642 8 O -0.427 6.427 9 N -0.343 5.343 10 C 0.065 3.935 11 H 0.084 0.916 12 C -0.138 4.138 13 C -0.168 4.168 14 C 0.062 3.938 15 N -0.324 5.324 16 C -0.391 4.391 17 H 0.081 0.919 18 C -0.243 4.243 19 N -0.582 5.582 20 Si 0.792 3.208 21 H -0.193 1.193 22 H -0.215 1.215 23 H -0.223 1.223 24 C 0.033 3.967 25 C -0.178 4.178 26 N -0.227 5.227 27 H 0.116 0.884 28 H 0.089 0.911 29 H 0.136 0.864 30 H 0.219 0.781 31 H 0.235 0.765 32 H 0.255 0.745 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.012 0.988 38 H 0.065 0.935 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.744 19.409 4.773 26.727 hybrid contribution 0.814 0.709 -0.682 1.277 sum -16.930 20.118 4.091 26.610 Atomic orbital electron populations 1.20946 0.84963 1.05347 1.04888 1.22619 0.99610 0.87720 0.89774 1.23535 0.96279 1.01574 0.99187 1.24133 0.93434 0.95946 0.88994 1.68280 1.41987 0.99374 1.13135 1.22454 0.87814 0.92815 0.97446 1.17703 0.82772 0.86534 0.77181 1.90762 1.67689 1.33888 1.50391 1.46104 1.04856 1.11017 1.72283 1.19901 0.92942 0.83915 0.96785 0.91627 1.21130 0.94970 0.98155 0.99573 1.21837 0.99930 0.96190 0.98879 1.20823 0.95704 0.95238 0.82077 1.43871 1.01623 1.83829 1.03045 1.19502 0.90919 1.30187 0.98516 0.91871 1.25732 1.00625 0.97732 1.00181 1.70238 1.18002 1.32918 1.37002 0.85273 0.79452 0.77587 0.78511 1.19277 1.21531 1.22268 1.20632 0.84562 0.93361 0.98140 1.21633 0.99562 1.00126 0.96472 1.68035 1.08795 1.33162 1.12683 0.88412 0.91062 0.86363 0.78069 0.76507 0.74541 0.91732 0.89903 0.92694 0.90206 0.98823 0.93463 0.94215 0.94357 0.94157 0.93026 0.92505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.97 10.22 71.23 0.73 -0.24 16 2 C 0.15 2.51 6.82 42.65 0.29 2.81 16 3 C -0.18 -1.78 9.87 22.54 0.22 -1.56 16 4 C 0.14 1.75 11.30 84.78 0.96 2.70 16 5 N -0.51 -11.30 9.57 -189.10 -1.81 -13.11 16 6 C 0.26 7.65 7.59 137.69 1.05 8.69 16 7 C 0.58 19.75 7.71 86.99 0.67 20.42 16 8 O -0.55 -22.99 16.38 -3.62 -0.06 -23.05 16 9 N -0.69 -21.28 4.87 -454.27 -2.21 -23.49 16 10 C 0.17 5.83 1.96 43.01 0.08 5.91 16 11 H 0.07 2.48 6.64 -2.39 -0.02 2.47 16 12 C -0.10 -3.35 5.00 29.76 0.15 -3.20 16 13 C -0.13 -4.75 5.71 30.22 0.17 -4.58 16 14 C 0.19 9.00 4.67 86.49 0.40 9.40 16 15 N -0.60 -30.19 2.27 -698.39 -1.59 -31.77 16 16 C -0.26 -14.30 9.44 84.03 0.79 -13.50 16 17 H 0.06 3.43 7.88 -2.91 -0.02 3.40 16 18 C -0.05 -2.65 4.87 84.86 0.41 -2.24 16 19 N -0.94 -55.29 11.01 21.65 0.24 -55.05 16 20 Si 0.96 44.99 29.58 68.60 2.03 47.02 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 23 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 24 C 0.16 7.10 5.65 87.38 0.49 7.59 16 25 C -0.14 -5.26 5.20 29.39 0.15 -5.11 16 26 N -0.51 -14.13 10.07 -177.25 -1.78 -15.91 16 27 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 29 H 0.12 0.24 8.10 -2.39 -0.02 0.22 16 30 H 0.20 -0.11 8.06 -2.91 -0.02 -0.13 16 31 H 0.22 0.71 8.06 -2.91 -0.02 0.69 16 32 H 0.42 11.07 7.92 -92.71 -0.73 10.34 16 33 H 0.06 2.44 7.48 -2.39 -0.02 2.42 16 34 H 0.08 2.29 8.05 -2.38 -0.02 2.27 16 35 H 0.05 1.96 7.31 -2.39 -0.02 1.95 16 36 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 37 H -0.01 -0.34 8.03 -2.39 -0.02 -0.36 16 38 H 0.05 2.53 6.33 -2.39 -0.02 2.51 16 39 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 40 H 0.04 1.65 8.06 -2.39 -0.02 1.63 16 41 H 0.04 1.82 7.99 -2.39 -0.02 1.80 16 42 H 0.05 2.00 7.98 -2.38 -0.02 1.98 16 43 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -76.03 349.85 1.68 -74.35 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: 0.29 Total: 13.93 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 6.58 Total: 27.09 kcal Atomic # 7 Polarization: -132.19 SS G_CDS: -7.16 Total: -139.34 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: -0.06 Total: -23.05 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -76.03 1.68 -74.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052337708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.939 kcal (2) G-P(sol) polarization free energy of solvation -76.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds