Wall clock time and date at job start Fri Apr 10 2020 21:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47164 * 2 1 4 4 C 1.52999 * 109.47122 * 119.99988 * 2 1 3 5 5 C 1.52991 * 109.47396 * 65.89072 * 4 2 1 6 6 N 1.46906 * 109.47160 * 180.12644 * 5 4 2 7 7 C 1.46901 * 110.99700 * 200.24684 * 6 5 4 8 8 C 1.50702 * 109.47341 * 66.04710 * 7 6 5 9 9 H 1.07999 * 119.99674 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00190 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99663 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00205 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47347 * 89.99557 * 12 10 8 14 14 H 1.48497 * 109.47214 * 209.99983 * 12 10 8 15 15 H 1.48501 * 109.46743 * 329.99753 * 12 10 8 16 16 C 1.46898 * 111.00116 * 76.29466 * 6 5 4 17 17 C 1.50701 * 109.46981 * 196.02256 * 16 6 5 18 18 C 1.38343 * 119.86116 * 254.15294 * 17 16 6 19 19 C 1.37929 * 120.18135 * 179.76671 * 18 17 16 20 20 C 1.39653 * 119.89502 * 0.50765 * 19 18 17 21 21 C 1.43209 * 120.13908 * 179.72006 * 20 19 18 22 22 N 9.17201 * 141.07987 * 171.20009 * 4 1 2 23 23 C 1.39582 * 119.72641 * 359.75066 * 20 19 18 24 24 C 1.38199 * 119.81953 * 359.97438 * 23 20 19 25 25 F 1.35096 * 119.95171 * 179.97438 * 24 23 20 26 26 H 1.09003 * 109.46743 * 183.02682 * 1 2 3 27 27 H 1.08996 * 109.47414 * 303.02128 * 1 2 3 28 28 H 1.08999 * 109.47139 * 63.03158 * 1 2 3 29 29 H 1.08999 * 109.47308 * 239.99506 * 2 1 3 30 30 H 1.08999 * 109.47779 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47430 * 300.00243 * 3 2 1 32 32 H 1.08999 * 109.47411 * 59.99570 * 3 2 1 33 33 H 1.09006 * 109.47194 * 305.88840 * 4 2 1 34 34 H 1.09001 * 109.47393 * 185.89429 * 4 2 1 35 35 H 1.09006 * 109.47391 * 60.12591 * 5 4 2 36 36 H 1.09001 * 109.47293 * 300.12245 * 5 4 2 37 37 H 1.09006 * 109.47026 * 186.04663 * 7 6 5 38 38 H 1.08998 * 109.47617 * 306.04464 * 7 6 5 39 39 H 0.96999 * 119.99891 * 180.02562 * 11 10 8 40 40 H 1.09002 * 109.46761 * 316.02325 * 16 6 5 41 41 H 1.09001 * 109.47156 * 76.02118 * 16 6 5 42 42 H 1.08003 * 119.90951 * 0.02562 * 18 17 16 43 43 H 1.07998 * 120.05648 * 180.25061 * 19 18 17 44 44 H 1.08004 * 120.09066 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6545 -2.2001 1.1775 6 7 2.1416 -2.8919 2.3784 7 6 2.2303 -4.3406 2.1517 8 6 3.2915 -4.6236 1.1198 9 1 3.8443 -3.8087 0.6763 10 6 3.5558 -5.9227 0.7410 11 7 2.8821 -6.9150 1.2806 12 14 4.8716 -6.2736 -0.5377 13 1 6.1795 -6.4672 0.1383 14 1 4.5159 -7.5038 -1.2893 15 1 4.9653 -5.1284 -1.4784 16 6 1.2932 -2.5917 3.5395 17 6 2.0174 -2.9767 4.8037 18 6 1.6350 -4.1102 5.4987 19 6 2.2964 -4.4713 6.6539 20 6 3.3480 -3.6846 7.1289 21 6 4.0344 -4.0514 8.3310 22 7 4.5789 -4.3425 9.2845 23 6 3.7269 -2.5389 6.4274 24 6 3.0599 -2.1909 5.2681 25 9 3.4241 -1.0823 4.5873 26 1 -0.3633 -1.0263 0.0543 27 1 -0.3634 0.5600 0.8616 28 1 -0.3633 0.4660 -0.9159 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.5931 -0.2719 2.1361 34 1 3.1249 -0.6308 1.3036 35 1 2.1032 -2.6500 0.2918 36 1 0.5697 -2.2905 1.1210 37 1 2.4896 -4.8393 3.0857 38 1 1.2694 -4.7123 1.7961 39 1 3.0682 -7.8290 1.0145 40 1 1.0690 -1.5252 3.5595 41 1 0.3641 -3.1570 3.4664 42 1 0.8191 -4.7162 5.1333 43 1 1.9989 -5.3588 7.1926 44 1 4.5396 -1.9264 6.7892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173548310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:25:37 Heat of formation + Delta-G solvation = -7.587760 kcal Electronic energy + Delta-G solvation = -24757.678388 eV Core-core repulsion = 21202.914135 eV Total energy + Delta-G solvation = -3554.764253 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.165 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.57764 -39.37403 -37.59449 -36.43315 -35.36045 -32.74256 -31.74557 -30.58052 -28.80243 -27.52469 -27.01803 -25.17109 -22.92892 -22.63964 -22.34063 -20.03394 -19.55153 -19.15323 -16.65719 -16.35293 -15.89568 -15.82179 -15.39468 -14.95439 -14.70325 -14.50372 -14.00262 -13.91323 -13.85746 -13.65285 -13.34717 -13.17262 -12.97437 -12.77168 -12.45450 -12.20390 -12.05160 -11.99760 -11.76959 -11.69244 -11.31823 -11.18342 -11.09029 -10.82504 -10.74326 -10.68495 -10.40333 -10.22031 -10.00441 -9.77885 -9.23761 -8.90778 -8.51842 -8.45403 -7.32238 -6.05920 -4.06163 0.70834 1.26369 2.60160 2.88668 3.30652 3.37176 3.40184 3.71061 3.82923 4.40608 4.51514 4.72549 4.80726 4.94590 5.00289 5.12028 5.19833 5.26632 5.30421 5.39746 5.62431 5.65096 5.70883 5.73129 5.89206 5.92571 5.95629 6.03384 6.08020 6.09257 6.12167 6.20209 6.24866 6.27254 6.42224 6.46232 6.53797 6.76487 6.84895 6.85762 7.23817 7.28638 7.41794 7.76909 8.03388 8.14776 8.49029 9.01261 9.58030 11.04914 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.005506 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.115245 B = 5083.829010 C = 7450.508600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.106 4.106 5 C 0.062 3.938 6 N -0.530 5.530 7 C 0.191 3.809 8 C -0.505 4.505 9 H 0.063 0.937 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.894 3.106 13 H -0.281 1.281 14 H -0.288 1.288 15 H -0.274 1.274 16 C 0.085 3.915 17 C -0.062 4.062 18 C -0.081 4.081 19 C -0.079 4.079 20 C -0.015 4.015 21 C 0.265 3.735 22 N -0.425 5.425 23 C -0.113 4.113 24 C 0.125 3.875 25 F -0.124 7.124 26 H 0.058 0.942 27 H 0.049 0.951 28 H 0.047 0.953 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.053 0.947 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.022 0.978 37 H 0.034 0.966 38 H -0.010 1.010 39 H 0.261 0.739 40 H 0.078 0.922 41 H 0.042 0.958 42 H 0.142 0.858 43 H 0.136 0.864 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.652 11.596 4.660 13.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.117 4.117 3 C -0.201 4.201 4 C -0.144 4.144 5 C -0.066 4.066 6 N -0.254 5.254 7 C 0.066 3.934 8 C -0.544 4.544 9 H 0.081 0.919 10 C -0.144 4.144 11 N -0.537 5.537 12 Si 0.722 3.278 13 H -0.207 1.207 14 H -0.214 1.214 15 H -0.198 1.198 16 C -0.043 4.043 17 C -0.064 4.064 18 C -0.100 4.100 19 C -0.100 4.100 20 C -0.018 4.018 21 C -0.051 4.051 22 N -0.100 5.100 23 C -0.135 4.135 24 C 0.105 3.895 25 F -0.103 7.103 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.041 0.959 37 H 0.052 0.948 38 H 0.008 0.992 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.159 0.841 43 H 0.154 0.846 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.339 11.157 6.193 13.478 hybrid contribution -0.126 -0.461 -1.370 1.451 sum -4.465 10.696 4.823 12.554 Atomic orbital electron populations 1.21887 0.95816 1.01889 1.00870 1.21110 0.95467 0.95827 0.99327 1.21816 1.00972 0.96321 1.01016 1.21625 1.01504 0.95205 0.96113 1.22076 0.96627 0.93195 0.94664 1.62120 1.47872 1.13429 1.01957 1.19792 0.95837 0.80327 0.97400 1.21134 1.19246 0.92128 1.21903 0.91864 1.24947 0.96470 0.96227 0.96760 1.69942 1.41185 0.99237 1.43379 0.86555 0.82008 0.77680 0.81534 1.20677 1.21372 1.19839 1.21035 0.93770 1.00560 0.88934 1.20244 0.95210 0.94348 0.96609 1.20944 1.00171 0.95153 0.93703 1.21129 0.93910 0.98693 0.96267 1.15593 0.97868 0.97306 0.91069 1.25601 0.93246 0.93455 0.92756 1.81226 1.09046 1.08252 1.11459 1.20988 1.00750 0.97087 0.94627 1.17113 0.95694 0.85684 0.91054 1.91527 1.90594 1.49284 1.78865 0.92285 0.93149 0.93400 0.91209 0.92767 0.93315 0.93042 0.92873 0.91387 0.89465 0.95941 0.94774 0.99186 0.92969 0.90421 0.93992 0.84071 0.84601 0.84185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.03 37.16 0.34 -1.35 16 2 C -0.10 -1.24 2.91 -90.62 -0.26 -1.50 16 3 C -0.14 -1.58 9.19 37.15 0.34 -1.23 16 4 C -0.11 -1.56 4.79 -26.74 -0.13 -1.69 16 5 C 0.06 1.09 4.58 -3.83 -0.02 1.08 16 6 N -0.53 -10.27 4.37 -237.51 -1.04 -11.30 16 7 C 0.19 4.56 4.57 -4.97 -0.02 4.54 16 8 C -0.51 -13.47 8.23 -34.44 -0.28 -13.76 16 9 H 0.06 1.69 7.32 -52.49 -0.38 1.31 16 10 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 11 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 12 Si 0.89 21.18 29.54 -169.99 -5.02 16.16 16 13 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 16 C 0.09 1.34 4.60 -4.98 -0.02 1.32 16 17 C -0.06 -0.92 4.68 -104.46 -0.49 -1.41 16 18 C -0.08 -1.08 8.94 -39.66 -0.35 -1.43 16 19 C -0.08 -0.95 9.75 -39.17 -0.38 -1.33 16 20 C -0.01 -0.18 5.73 -106.94 -0.61 -0.80 16 21 C 0.26 3.51 15.33 -22.47 -0.34 3.16 16 22 N -0.42 -6.38 18.54 41.84 0.78 -5.61 16 23 C -0.11 -1.43 9.73 -39.09 -0.38 -1.81 16 24 C 0.12 1.81 7.24 -39.48 -0.29 1.53 16 25 F -0.12 -1.93 16.75 2.25 0.04 -1.89 16 26 H 0.06 0.72 6.46 -51.93 -0.34 0.39 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.75 6.78 -51.93 -0.35 0.39 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 35 H 0.09 1.76 6.58 -51.93 -0.34 1.41 16 36 H 0.02 0.38 6.37 -51.93 -0.33 0.05 16 37 H 0.03 0.86 6.70 -51.93 -0.35 0.51 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.08 1.11 6.51 -51.93 -0.34 0.77 16 41 H 0.04 0.64 7.84 -51.93 -0.41 0.23 16 42 H 0.14 1.73 7.99 -52.48 -0.42 1.31 16 43 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 44 H 0.14 1.50 8.06 -52.48 -0.42 1.08 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -29.02 370.64 -8.55 -37.57 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.62 Total: -2.44 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: -3.01 Total: -13.22 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.47 Total: -41.76 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.02 -8.55 -37.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173548310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.978 kcal (2) G-P(sol) polarization free energy of solvation -29.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds