Wall clock time and date at job start Fri Apr 10 2020 21:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47164 * 2 1 4 4 C 1.52999 * 109.47122 * 119.99988 * 2 1 3 5 5 C 1.52991 * 109.47396 * 65.89072 * 4 2 1 6 6 N 1.46906 * 109.47160 * 180.12644 * 5 4 2 7 7 C 1.46901 * 110.99700 * 200.24684 * 6 5 4 8 8 C 1.50702 * 109.47341 * 66.04710 * 7 6 5 9 9 H 1.07999 * 119.99674 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00190 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99663 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 120.00205 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.47347 * 89.99557 * 12 10 8 14 14 H 1.48497 * 109.47214 * 209.99983 * 12 10 8 15 15 H 1.48501 * 109.46743 * 329.99753 * 12 10 8 16 16 C 1.46898 * 111.00116 * 76.29466 * 6 5 4 17 17 C 1.50701 * 109.46981 * 196.02256 * 16 6 5 18 18 C 1.38343 * 119.86116 * 254.15294 * 17 16 6 19 19 C 1.37929 * 120.18135 * 179.76671 * 18 17 16 20 20 C 1.39653 * 119.89502 * 0.50765 * 19 18 17 21 21 C 1.43209 * 120.13908 * 179.72006 * 20 19 18 22 22 N 9.17201 * 141.07987 * 171.20009 * 4 1 2 23 23 C 1.39582 * 119.72641 * 359.75066 * 20 19 18 24 24 C 1.38199 * 119.81953 * 359.97438 * 23 20 19 25 25 F 1.35096 * 119.95171 * 179.97438 * 24 23 20 26 26 H 1.09003 * 109.46743 * 183.02682 * 1 2 3 27 27 H 1.08996 * 109.47414 * 303.02128 * 1 2 3 28 28 H 1.08999 * 109.47139 * 63.03158 * 1 2 3 29 29 H 1.08999 * 109.47308 * 239.99506 * 2 1 3 30 30 H 1.08999 * 109.47779 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47430 * 300.00243 * 3 2 1 32 32 H 1.08999 * 109.47411 * 59.99570 * 3 2 1 33 33 H 1.09006 * 109.47194 * 305.88840 * 4 2 1 34 34 H 1.09001 * 109.47393 * 185.89429 * 4 2 1 35 35 H 1.09006 * 109.47391 * 60.12591 * 5 4 2 36 36 H 1.09001 * 109.47293 * 300.12245 * 5 4 2 37 37 H 1.09006 * 109.47026 * 186.04663 * 7 6 5 38 38 H 1.08998 * 109.47617 * 306.04464 * 7 6 5 39 39 H 0.96999 * 119.99891 * 180.02562 * 11 10 8 40 40 H 1.09002 * 109.46761 * 316.02325 * 16 6 5 41 41 H 1.09001 * 109.47156 * 76.02118 * 16 6 5 42 42 H 1.08003 * 119.90951 * 0.02562 * 18 17 16 43 43 H 1.07998 * 120.05648 * 180.25061 * 19 18 17 44 44 H 1.08004 * 120.09066 * 180.02562 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6545 -2.2001 1.1775 6 7 2.1416 -2.8919 2.3784 7 6 2.2303 -4.3406 2.1517 8 6 3.2915 -4.6236 1.1198 9 1 3.8443 -3.8087 0.6763 10 6 3.5558 -5.9227 0.7410 11 7 2.8821 -6.9150 1.2806 12 14 4.8716 -6.2736 -0.5377 13 1 6.1795 -6.4672 0.1383 14 1 4.5159 -7.5038 -1.2893 15 1 4.9653 -5.1284 -1.4784 16 6 1.2932 -2.5917 3.5395 17 6 2.0174 -2.9767 4.8037 18 6 1.6350 -4.1102 5.4987 19 6 2.2964 -4.4713 6.6539 20 6 3.3480 -3.6846 7.1289 21 6 4.0344 -4.0514 8.3310 22 7 4.5789 -4.3425 9.2845 23 6 3.7269 -2.5389 6.4274 24 6 3.0599 -2.1909 5.2681 25 9 3.4241 -1.0823 4.5873 26 1 -0.3633 -1.0263 0.0543 27 1 -0.3634 0.5600 0.8616 28 1 -0.3633 0.4660 -0.9159 29 1 1.8933 -0.5139 -0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.5931 -0.2719 2.1361 34 1 3.1249 -0.6308 1.3036 35 1 2.1032 -2.6500 0.2918 36 1 0.5697 -2.2905 1.1210 37 1 2.4896 -4.8393 3.0857 38 1 1.2694 -4.7123 1.7961 39 1 3.0682 -7.8290 1.0145 40 1 1.0690 -1.5252 3.5595 41 1 0.3641 -3.1570 3.4664 42 1 0.8191 -4.7162 5.1333 43 1 1.9989 -5.3588 7.1926 44 1 4.5396 -1.9264 6.7892 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173548310.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:25:36 Heat of formation + Delta-G solvation = -21.469966 kcal Electronic energy + Delta-G solvation = -24758.280365 eV Core-core repulsion = 21202.914135 eV Total energy + Delta-G solvation = -3555.366230 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 304.165 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.73049 -40.48526 -38.92703 -37.54760 -36.60118 -34.67719 -32.99052 -31.63261 -30.26611 -29.04804 -27.92720 -26.66859 -24.42851 -23.89923 -23.51748 -21.50048 -20.67430 -20.23831 -18.50743 -17.61277 -17.12861 -16.95283 -16.64475 -16.51394 -15.99536 -15.88219 -15.41972 -14.96389 -14.95771 -14.88934 -14.49625 -14.48648 -14.17200 -13.93944 -13.83925 -13.55755 -13.52128 -13.12655 -12.96791 -12.90999 -12.72673 -12.57700 -12.39772 -12.33103 -12.22110 -11.96772 -11.88917 -11.46785 -11.33363 -11.21709 -11.14684 -10.54074 -9.97126 -9.62694 -8.91272 -8.15228 -6.21702 -0.36569 0.22249 1.41810 1.43105 1.52621 1.52832 1.79659 2.43160 2.63190 2.76474 3.18322 3.36361 3.47238 3.74812 3.81327 3.99755 4.06583 4.17848 4.18863 4.30154 4.40765 4.53969 4.57464 4.70967 4.78044 4.89284 4.90682 4.94483 4.97116 5.05212 5.06596 5.09391 5.20308 5.22175 5.24211 5.34753 5.35957 5.42819 5.47313 5.62171 5.63055 5.72386 5.78730 6.14515 6.35293 6.43442 6.70673 6.94186 7.46657 8.95049 Molecular weight = 304.16amu Principal moments of inertia in cm(-1) A = 0.008493 B = 0.005506 C = 0.003757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3296.115245 B = 5083.829010 C = 7450.508600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 C -0.140 4.140 4 C -0.093 4.093 5 C 0.065 3.935 6 N -0.537 5.537 7 C 0.210 3.790 8 C -0.517 4.517 9 H 0.056 0.944 10 C 0.009 3.991 11 N -0.928 5.928 12 Si 0.954 3.046 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.267 1.267 16 C 0.086 3.914 17 C -0.079 4.079 18 C -0.088 4.088 19 C -0.069 4.069 20 C -0.013 4.013 21 C 0.286 3.714 22 N -0.453 5.453 23 C -0.104 4.104 24 C 0.108 3.892 25 F -0.133 7.133 26 H 0.046 0.954 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.030 0.970 37 H 0.019 0.981 38 H -0.037 1.037 39 H 0.262 0.738 40 H 0.094 0.906 41 H 0.046 0.954 42 H 0.148 0.852 43 H 0.161 0.839 44 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.683 12.668 4.890 14.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 C -0.197 4.197 4 C -0.131 4.131 5 C -0.062 4.062 6 N -0.261 5.261 7 C 0.084 3.916 8 C -0.555 4.555 9 H 0.074 0.926 10 C -0.189 4.189 11 N -0.569 5.569 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.192 1.192 16 C -0.041 4.041 17 C -0.081 4.081 18 C -0.106 4.106 19 C -0.089 4.089 20 C -0.016 4.016 21 C -0.029 4.029 22 N -0.129 5.129 23 C -0.126 4.126 24 C 0.088 3.912 25 F -0.112 7.112 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.048 0.952 37 H 0.037 0.963 38 H -0.019 1.019 39 H 0.071 0.929 40 H 0.113 0.887 41 H 0.065 0.935 42 H 0.166 0.834 43 H 0.179 0.821 44 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.374 12.254 6.424 14.510 hybrid contribution -0.155 -0.778 -1.411 1.618 sum -4.530 11.475 5.014 13.317 Atomic orbital electron populations 1.21852 0.94665 1.01458 1.02148 1.21096 0.96429 0.96624 0.97513 1.21773 1.00733 0.95030 1.02163 1.21498 1.00505 0.93259 0.97852 1.22047 0.96738 0.94628 0.92818 1.62034 1.49770 1.10639 1.03680 1.19397 0.93561 0.83047 0.95637 1.21438 1.19632 0.92053 1.22393 0.92606 1.25697 0.98449 0.96166 0.98633 1.70043 1.42614 0.99521 1.44726 0.85614 0.79436 0.77652 0.79335 1.20378 1.20904 1.19172 1.21081 0.93474 1.01661 0.87907 1.20288 0.95894 0.95341 0.96568 1.21080 1.00651 0.94775 0.94117 1.21382 0.92938 0.99026 0.95557 1.15595 0.97929 0.97361 0.90747 1.25524 0.92481 0.92577 0.92324 1.81258 1.10006 1.09249 1.12374 1.21149 1.00632 0.97071 0.93703 1.17250 0.96266 0.85798 0.91847 1.91500 1.90741 1.49732 1.79200 0.93529 0.92062 0.91980 0.92386 0.93172 0.91860 0.92201 0.91768 0.93045 0.92619 0.95158 0.96273 1.01890 0.92901 0.88748 0.93542 0.83400 0.82126 0.82230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.03 71.98 0.65 -2.41 16 2 C -0.10 -2.35 2.91 -10.80 -0.03 -2.38 16 3 C -0.14 -2.79 9.19 71.98 0.66 -2.13 16 4 C -0.09 -2.70 4.79 30.59 0.15 -2.55 16 5 C 0.07 2.34 4.58 86.30 0.40 2.73 16 6 N -0.54 -21.11 4.37 -905.34 -3.95 -25.07 16 7 C 0.21 10.27 4.57 85.56 0.39 10.66 16 8 C -0.52 -28.12 8.23 25.60 0.21 -27.90 16 9 H 0.06 3.06 7.32 -2.91 -0.02 3.03 16 10 C 0.01 0.49 5.46 84.66 0.46 0.95 16 11 N -0.93 -53.61 13.29 21.45 0.28 -53.32 16 12 Si 0.95 43.68 29.54 68.60 2.03 45.70 16 13 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 14 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 C 0.09 2.69 4.60 85.56 0.39 3.08 16 17 C -0.08 -2.29 4.68 -19.76 -0.09 -2.39 16 18 C -0.09 -2.24 8.94 22.22 0.20 -2.04 16 19 C -0.07 -1.51 9.75 22.54 0.22 -1.29 16 20 C -0.01 -0.29 5.73 -21.36 -0.12 -0.41 16 21 C 0.29 7.06 15.33 88.33 1.35 8.41 16 22 N -0.45 -12.98 18.54 19.01 0.35 -12.63 16 23 C -0.10 -2.47 9.73 22.59 0.22 -2.25 16 24 C 0.11 3.05 7.24 22.34 0.16 3.21 16 25 F -0.13 -4.03 16.75 44.97 0.75 -3.28 16 26 H 0.05 1.09 6.46 -2.39 -0.02 1.08 16 27 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.03 8.14 -2.39 -0.02 1.02 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.71 6.78 -2.38 -0.02 1.70 16 34 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.06 2.33 6.58 -2.38 -0.02 2.31 16 36 H 0.03 1.03 6.37 -2.39 -0.02 1.01 16 37 H 0.02 0.99 6.70 -2.38 -0.02 0.98 16 38 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 39 H 0.26 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.09 2.59 6.51 -2.39 -0.02 2.58 16 41 H 0.05 1.41 7.84 -2.39 -0.02 1.39 16 42 H 0.15 3.53 7.99 -2.91 -0.02 3.50 16 43 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -62.40 370.64 5.67 -56.73 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: 0.99 Total: 8.57 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 5.22 Total: -16.71 kcal Atomic # 7 Polarization: -87.70 SS G_CDS: -3.32 Total: -91.02 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.75 Total: -3.28 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.40 5.67 -56.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173548310.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.264 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds