Wall clock time and date at job start Fri Apr 10 2020 21:24:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86795 * 120.00230 * 2 1 4 4 H 1.48500 * 109.47018 * 240.00120 * 3 2 1 5 5 H 1.48505 * 109.47096 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47407 * 119.99751 * 3 2 1 7 7 C 1.38813 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00027 * 180.02562 * 7 2 1 9 9 N 1.36943 * 119.99968 * 359.97438 * 7 2 1 10 10 C 1.46702 * 125.32156 * 179.97438 * 9 7 2 11 11 C 1.54043 * 106.82642 * 161.82435 * 10 9 7 12 12 H 1.09007 * 113.43296 * 262.66885 * 11 10 9 13 13 C 1.55123 * 108.25939 * 135.80968 * 11 10 9 14 14 C 1.54857 * 101.77519 * 285.17853 * 13 11 10 15 15 N 1.47397 * 104.81213 * 322.82004 * 14 13 11 16 16 C 1.34776 * 125.58901 * 204.60934 * 15 14 13 17 17 O 1.21277 * 120.00196 * 180.02562 * 16 15 14 18 18 C 1.50704 * 119.99965 * 0.02562 * 16 15 14 19 19 H 1.09007 * 110.04844 * 24.66765 * 18 16 15 20 20 C 1.54385 * 110.11624 * 146.17990 * 18 16 15 21 21 C 1.54927 * 104.21804 * 142.82401 * 20 18 16 22 22 C 1.54981 * 102.82024 * 322.27313 * 21 20 18 23 23 C 1.53480 * 110.07179 * 263.18185 * 18 16 15 24 24 C 1.52551 * 121.08606 * 24.77282 * 23 18 16 25 25 C 1.52568 * 121.05732 * 96.48943 * 23 18 16 26 26 C 1.46733 * 108.82131 * 24.86754 * 15 14 13 27 27 H 1.09002 * 111.32583 * 235.85798 * 26 15 14 28 28 C 1.46634 * 125.32152 * 359.97438 * 9 7 2 29 29 H 0.97005 * 120.00153 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.98732 * 42.48222 * 10 9 7 31 31 H 1.08998 * 109.99163 * 281.16367 * 10 9 7 32 32 H 1.09001 * 110.96566 * 167.06433 * 13 11 10 33 33 H 1.08991 * 110.96999 * 43.29928 * 13 11 10 34 34 H 1.08994 * 110.37464 * 203.98076 * 14 13 11 35 35 H 1.09001 * 110.36680 * 81.64638 * 14 13 11 36 36 H 1.09005 * 110.48153 * 24.14087 * 20 18 16 37 37 H 1.08998 * 110.48029 * 261.51013 * 20 18 16 38 38 H 1.08999 * 110.74168 * 203.93902 * 21 20 18 39 39 H 1.09004 * 110.73827 * 80.60604 * 21 20 18 40 40 H 1.08997 * 110.51310 * 156.22021 * 22 21 20 41 41 H 1.09000 * 110.51548 * 278.92926 * 22 21 20 42 42 H 1.09006 * 117.50725 * 217.89169 * 24 23 18 43 43 H 1.08999 * 117.51070 * 2.96805 * 24 23 18 44 44 H 1.09001 * 117.50736 * 356.97112 * 25 23 18 45 45 H 1.08994 * 117.51501 * 142.02454 * 25 23 18 46 46 H 1.09004 * 109.75934 * 300.93070 * 28 9 7 47 47 H 1.09008 * 109.75429 * 61.62963 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 1.9380 -3.7211 0.0017 11 6 0.8516 -4.7110 0.4629 12 1 0.9106 -4.9563 1.5234 13 6 0.9030 -5.9550 -0.4624 14 6 0.2521 -5.4119 -1.7584 15 7 -0.8186 -4.5118 -1.2937 16 6 -1.9236 -4.1818 -1.9912 17 8 -2.7425 -3.4282 -1.5091 18 6 -2.1417 -4.7492 -3.3702 19 1 -1.5992 -5.6886 -3.4778 20 6 -3.6484 -4.9760 -3.6188 21 6 -3.8478 -4.6068 -5.1101 22 6 -2.8992 -3.3952 -5.2943 23 6 -1.6733 -3.7457 -4.4328 24 6 -0.6173 -2.6930 -4.1108 25 6 -0.2848 -3.8502 -5.0563 26 6 -0.4811 -4.0289 0.0502 27 1 -1.2764 -4.2497 0.7621 28 6 -0.1345 -2.5241 0.0028 29 1 -0.4850 0.8401 -0.0004 30 1 2.7805 -3.7440 0.6928 31 1 2.2730 -3.9774 -1.0033 32 1 0.3179 -6.7751 -0.0462 33 1 1.9323 -6.2645 -0.6430 34 1 -0.1674 -6.2300 -2.3439 35 1 0.9838 -4.8589 -2.3474 36 1 -4.2430 -4.3218 -2.9811 37 1 -3.9106 -6.0198 -3.4459 38 1 -4.8818 -4.3203 -5.3020 39 1 -3.5488 -5.4328 -5.7556 40 1 -2.6131 -3.2896 -6.3407 41 1 -3.3715 -2.4818 -4.9326 42 1 -0.7423 -1.7035 -4.5507 43 1 -0.1738 -2.7127 -3.1153 44 1 0.3774 -4.6312 -4.6825 45 1 -0.1911 -3.6227 -6.1181 46 1 -0.5497 -2.0329 0.8829 47 1 -0.5473 -2.0733 -0.8998 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075943607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:24:26 Heat of formation + Delta-G solvation = 18.681363 kcal Electronic energy + Delta-G solvation = -27158.960375 eV Core-core repulsion = 23728.795542 eV Total energy + Delta-G solvation = -3430.164833 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 304.189 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.54532 -38.96148 -37.07530 -34.75555 -33.97160 -32.14113 -30.79497 -29.63342 -28.30286 -26.37328 -25.54298 -24.67140 -22.74930 -22.16470 -21.28201 -20.38628 -19.84566 -19.05625 -17.72637 -17.10194 -16.64897 -15.83351 -15.55814 -15.08026 -14.77306 -14.27768 -14.03504 -13.77410 -13.57065 -13.32793 -12.85353 -12.68399 -12.54550 -12.30566 -12.09557 -11.92427 -11.53563 -11.43606 -11.26389 -11.05315 -11.03340 -10.96362 -10.74883 -10.70935 -10.53446 -10.40188 -10.21295 -10.12611 -10.02946 -9.81450 -9.75835 -9.65291 -9.02599 -8.53677 -8.07697 -6.76649 -5.63054 -2.99228 3.10286 3.39496 3.43386 3.47375 3.49618 3.98072 4.45581 4.52892 4.69760 4.75049 4.81165 4.98658 5.04526 5.12408 5.20668 5.30037 5.35239 5.42514 5.53326 5.54770 5.65626 5.67187 5.74936 5.79379 5.81491 5.86984 5.87422 5.89060 5.99482 6.04585 6.05958 6.13984 6.24947 6.28024 6.33855 6.36479 6.41912 6.51305 6.55168 6.62498 6.69070 6.91572 7.61192 7.71064 7.94697 8.07604 8.34047 8.71981 9.28173 9.89134 10.52901 11.46264 Molecular weight = 304.19amu Principal moments of inertia in cm(-1) A = 0.014566 B = 0.005682 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1921.760512 B = 4926.421308 C = 5855.344247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.234 4.234 8 H 0.076 0.924 9 N -0.601 5.601 10 C 0.143 3.857 11 C -0.111 4.111 12 H 0.095 0.905 13 C -0.125 4.125 14 C 0.101 3.899 15 N -0.604 5.604 16 C 0.536 3.464 17 O -0.529 6.529 18 C -0.072 4.072 19 H 0.085 0.915 20 C -0.112 4.112 21 C -0.118 4.118 22 C -0.086 4.086 23 C -0.120 4.120 24 C -0.159 4.159 25 C -0.168 4.168 26 C 0.112 3.888 27 H 0.077 0.923 28 C 0.179 3.821 29 H 0.253 0.747 30 H 0.033 0.967 31 H 0.017 0.983 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.755 -14.666 -8.709 17.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.212 1.212 7 C -0.362 4.362 8 H 0.094 0.906 9 N -0.328 5.328 10 C 0.017 3.983 11 C -0.131 4.131 12 H 0.113 0.887 13 C -0.163 4.163 14 C -0.022 4.022 15 N -0.338 5.338 16 C 0.324 3.676 17 O -0.405 6.405 18 C -0.094 4.094 19 H 0.104 0.896 20 C -0.149 4.149 21 C -0.156 4.156 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.196 4.196 25 C -0.205 4.205 26 C 0.008 3.992 27 H 0.095 0.905 28 C 0.054 3.946 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.112 0.888 43 H 0.126 0.874 44 H 0.110 0.890 45 H 0.111 0.889 46 H 0.066 0.934 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.344 -13.990 -8.486 16.701 hybrid contribution 0.687 0.889 0.030 1.124 sum -2.657 -13.101 -8.456 15.818 Atomic orbital electron populations 1.69984 1.04710 1.25146 1.56204 1.24817 0.95655 0.97597 1.02075 0.86248 0.78457 0.83501 0.77814 1.21249 1.21628 1.21196 1.18937 0.90262 0.82326 1.44690 0.90586 1.44187 1.01461 0.99872 1.87273 1.21282 0.93870 0.85966 0.97175 1.23148 0.95931 0.94706 0.99296 0.88657 1.22757 1.00975 0.97399 0.95156 1.22320 0.90127 0.92687 0.97090 1.48450 1.20526 1.47118 1.17679 1.19991 0.80185 0.81181 0.86262 1.90700 1.44097 1.35475 1.70191 1.21394 0.98358 0.98268 0.91360 0.89644 1.22357 0.93788 1.01623 0.97166 1.22427 0.99278 0.97795 0.96054 1.21860 0.93722 0.98517 0.98219 1.21467 0.90771 1.01040 0.98739 1.23074 1.00977 0.93946 1.01598 1.23009 0.96723 1.01966 0.98776 1.22813 0.95418 0.98131 0.82814 0.90471 1.21378 0.84077 0.87115 1.02034 0.93636 0.94866 0.96525 0.91152 0.90057 0.91400 0.91236 0.89533 0.91593 0.91369 0.91585 0.91679 0.90879 0.88777 0.87362 0.89048 0.88905 0.93358 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.80 10.24 55.49 0.57 -27.23 16 2 C 0.00 -0.13 5.48 -17.43 -0.10 -0.22 16 3 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.23 -6.57 10.25 -15.06 -0.15 -6.73 16 8 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 9 N -0.60 -15.39 3.38 -171.40 -0.58 -15.97 16 10 C 0.14 2.87 6.46 -3.39 -0.02 2.85 16 11 C -0.11 -1.84 4.28 -87.74 -0.38 -2.22 16 12 H 0.10 1.46 8.14 -51.92 -0.42 1.04 16 13 C -0.12 -1.56 6.34 -24.63 -0.16 -1.71 16 14 C 0.10 1.39 6.19 -2.57 -0.02 1.37 16 15 N -0.60 -10.62 2.75 -161.82 -0.45 -11.07 16 16 C 0.54 9.94 5.15 -10.98 -0.06 9.88 16 17 O -0.53 -12.10 15.79 5.56 0.09 -12.02 16 18 C -0.07 -1.04 2.82 -90.79 -0.26 -1.29 16 19 H 0.09 1.05 6.37 -51.92 -0.33 0.72 16 20 C -0.11 -1.43 6.33 -24.99 -0.16 -1.59 16 21 C -0.12 -1.28 6.91 -24.67 -0.17 -1.45 16 22 C -0.09 -1.08 6.58 -25.23 -0.17 -1.24 16 23 C -0.12 -1.71 2.26 -154.26 -0.35 -2.06 16 24 C -0.16 -2.71 9.63 -26.92 -0.26 -2.97 16 25 C -0.17 -2.18 10.23 -26.91 -0.28 -2.46 16 26 C 0.11 2.22 3.66 -65.81 -0.24 1.98 16 27 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 28 C 0.18 4.56 4.94 -3.19 -0.02 4.54 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.02 0.33 6.59 -51.93 -0.34 -0.01 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 34 H 0.07 0.75 6.70 -51.93 -0.35 0.40 16 35 H 0.07 1.03 7.24 -51.93 -0.38 0.65 16 36 H 0.09 1.32 6.95 -51.93 -0.36 0.96 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.71 8.11 -51.93 -0.42 0.28 16 41 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 43 H 0.11 2.27 6.87 -51.93 -0.36 1.91 16 44 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 1.40 7.33 -51.93 -0.38 1.02 16 47 H 0.06 1.63 6.56 -51.92 -0.34 1.29 16 LS Contribution 357.03 15.07 5.38 5.38 Total: -1.00 -32.93 357.03 -10.65 -43.58 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.87 Total: 3.11 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -2.77 Total: -3.30 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: -0.46 Total: -54.27 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.09 Total: -12.02 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.93 -10.65 -43.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075943607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.262 kcal (2) G-P(sol) polarization free energy of solvation -32.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds