Wall clock time and date at job start Fri Apr 10 2020 21:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38315 * 119.93472 * 2 1 4 4 C 1.38524 * 120.31411 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.90543 * 180.02562 * 4 3 2 6 6 C 1.38025 * 120.18426 * 0.02562 * 4 3 2 7 7 C 1.39594 * 119.86454 * 0.02562 * 6 4 3 8 8 C 1.47890 * 120.15709 * 179.97438 * 7 6 4 9 9 C 1.39937 * 119.45342 * 0.02857 * 8 7 6 10 10 C 1.36580 * 119.46801 * 179.97438 * 9 8 7 11 11 C 1.41320 * 118.41726 * 359.97438 * 10 9 8 12 12 C 1.41037 * 120.55466 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00184 * 154.63158 * 12 11 10 14 14 C 1.40018 * 119.99817 * 334.64056 * 12 11 10 15 15 N 1.30796 * 120.00044 * 343.62928 * 14 12 11 16 16 Si 1.86799 * 119.99932 * 163.63127 * 14 12 11 17 17 H 1.48495 * 109.47240 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47014 * 119.99972 * 16 14 12 19 19 H 1.48499 * 109.47023 * 239.99885 * 16 14 12 20 20 C 1.40947 * 118.89454 * 0.02562 * 11 10 9 21 21 C 1.50700 * 119.79784 * 180.02562 * 20 11 10 22 22 N 1.31265 * 120.40822 * 359.73712 * 20 11 10 23 23 C 1.38195 * 119.93605 * 180.02562 * 2 1 3 24 24 F 1.35103 * 120.08831 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47120 * 89.99682 * 1 2 3 26 26 H 1.09004 * 109.46666 * 210.00007 * 1 2 3 27 27 H 1.09004 * 109.46562 * 329.99689 * 1 2 3 28 28 H 1.07997 * 119.83944 * 359.72244 * 3 2 1 29 29 H 1.07999 * 120.06788 * 180.02562 * 6 4 3 30 30 H 1.07999 * 120.26511 * 359.95160 * 9 8 7 31 31 H 1.07997 * 120.79588 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00186 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.47099 * 89.99576 * 21 20 11 34 34 H 1.08998 * 109.47437 * 209.99467 * 21 20 11 35 35 H 1.08999 * 109.47350 * 330.00156 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5824 1.2078 0.0005 5 17 4.4380 2.7183 0.0012 6 6 4.2843 0.0193 0.0005 7 6 3.5954 -1.1948 -0.0005 8 6 4.3409 -2.4720 -0.0011 9 6 5.7401 -2.4521 0.0000 10 6 6.4289 -3.6315 0.0000 11 6 5.6948 -4.8390 -0.0006 12 6 6.3601 -6.0826 -0.0001 13 1 5.8694 -6.9574 0.4002 14 6 7.6569 -6.1829 -0.5184 15 7 8.1314 -5.2327 -1.2818 16 14 8.7094 -7.6738 -0.1196 17 1 7.9466 -8.5979 0.7575 18 1 9.0742 -8.3730 -1.3779 19 1 9.9443 -7.2354 0.5790 20 6 4.2865 -4.7799 -0.0017 21 6 3.4835 -6.0552 -0.0018 22 7 3.6702 -3.6210 0.0030 23 6 2.1966 -1.1976 -0.0005 24 9 1.5216 -2.3679 -0.0016 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6536 2.1318 -0.0045 29 1 5.3642 0.0287 0.0014 30 1 6.2710 -1.5116 0.0006 31 1 7.5088 -3.6411 0.0005 32 1 9.0297 -5.3024 -1.6411 33 1 3.2891 -6.3622 1.0259 34 1 2.5371 -5.8886 -0.5164 35 1 4.0433 -6.8371 -0.5148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242226708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:27:20 Heat of formation + Delta-G solvation = -16.202560 kcal Electronic energy + Delta-G solvation = -21676.360726 eV Core-core repulsion = 18192.547221 eV Total energy + Delta-G solvation = -3483.813505 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.09022 -39.19054 -38.22420 -36.27391 -34.51236 -33.13258 -31.50811 -30.98885 -29.51745 -27.29638 -26.66631 -25.34655 -22.77878 -21.75068 -20.81616 -19.85935 -17.57884 -17.09587 -16.40281 -15.93260 -15.48000 -15.10622 -14.59471 -14.44658 -14.02281 -13.28002 -13.26107 -13.21851 -12.98375 -12.67916 -12.59891 -12.45544 -12.04404 -11.80348 -11.75127 -11.59129 -11.49101 -11.34077 -11.01621 -10.96563 -10.80849 -10.65086 -10.53276 -9.91710 -9.63682 -8.83458 -8.37982 -8.18882 -8.11618 -7.36973 -7.07571 -4.65263 1.17930 1.36657 2.27621 2.50157 2.84739 2.89520 2.94449 3.02555 3.65764 3.81080 4.45250 4.65572 4.83348 5.05862 5.25477 5.41998 5.45010 5.46754 5.65789 5.81082 5.86986 6.09156 6.13173 6.26742 6.33269 6.38824 6.45383 6.56078 6.59623 6.69373 6.77292 6.80014 7.00037 7.12247 7.20177 7.55648 7.67251 7.76294 8.20319 8.39697 8.50688 9.48406 9.76759 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.003966 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.239440 B = 7058.753519 C = 8382.224211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.034 4.034 5 Cl -0.081 7.081 6 C -0.109 4.109 7 C 0.007 3.993 8 C -0.017 4.017 9 C -0.118 4.118 10 C -0.144 4.144 11 C 0.076 3.924 12 C -0.422 4.422 13 H 0.092 0.908 14 C 0.070 3.930 15 N -0.770 5.770 16 Si 0.916 3.084 17 H -0.256 1.256 18 H -0.270 1.270 19 H -0.268 1.268 20 C 0.012 3.988 21 C -0.072 4.072 22 N -0.431 5.431 23 C 0.105 3.895 24 F -0.113 7.113 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.102 0.898 31 H 0.128 0.872 32 H 0.288 0.712 33 H 0.049 0.951 34 H 0.051 0.949 35 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.384 7.423 1.537 9.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.114 4.114 3 C -0.137 4.137 4 C -0.061 4.061 5 Cl -0.052 7.052 6 C -0.129 4.129 7 C 0.005 3.995 8 C -0.150 4.150 9 C -0.138 4.138 10 C -0.169 4.169 11 C 0.071 3.929 12 C -0.450 4.450 13 H 0.110 0.890 14 C -0.151 4.151 15 N -0.393 5.393 16 Si 0.739 3.261 17 H -0.179 1.179 18 H -0.195 1.195 19 H -0.193 1.193 20 C -0.136 4.136 21 C -0.129 4.129 22 N -0.139 5.139 23 C 0.084 3.916 24 F -0.091 7.091 25 H 0.090 0.910 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.150 0.850 29 H 0.157 0.843 30 H 0.120 0.880 31 H 0.145 0.855 32 H 0.099 0.901 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.012 7.620 1.389 9.804 hybrid contribution 1.679 -0.535 0.017 1.762 sum -4.333 7.085 1.406 8.423 Atomic orbital electron populations 1.20666 0.90114 1.03067 1.02606 1.19701 0.96741 0.91341 1.03576 1.20521 0.91600 0.97503 1.04104 1.20604 0.92163 0.86447 1.06861 1.98337 1.77647 1.32053 1.97168 1.20884 1.00563 0.89076 1.02362 1.18678 0.90726 0.92787 0.97352 1.18428 0.89717 0.89374 1.17444 1.21247 0.93781 0.98057 1.00740 1.21284 1.00146 0.91101 1.04322 1.18478 0.91792 0.94044 0.88583 1.19813 0.97770 0.95809 1.31655 0.88999 1.26147 0.98206 0.98267 0.92491 1.69785 1.17184 1.32188 1.20169 0.86109 0.79645 0.80727 0.79599 1.17881 1.19525 1.19325 1.21040 0.91087 0.91990 1.09456 1.20262 0.98213 0.93964 1.00481 1.66887 1.40884 0.97580 1.08566 1.17581 0.89289 0.81226 1.03494 1.91534 1.79225 1.45245 1.93081 0.90989 0.91071 0.91268 0.85010 0.84319 0.87991 0.85460 0.90060 0.93234 0.92976 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.83 36.01 0.35 -0.93 16 2 C -0.11 -1.72 5.88 -104.61 -0.62 -2.34 16 3 C -0.12 -1.67 9.47 -39.45 -0.37 -2.04 16 4 C -0.03 -0.52 6.31 -39.55 -0.25 -0.77 16 5 Cl -0.08 -1.07 28.95 -51.86 -1.50 -2.57 16 6 C -0.11 -1.90 9.19 -39.15 -0.36 -2.26 16 7 C 0.01 0.14 5.88 -104.83 -0.62 -0.48 16 8 C -0.02 -0.40 6.74 -82.76 -0.56 -0.95 16 9 C -0.12 -2.69 9.38 -39.54 -0.37 -3.06 16 10 C -0.14 -3.54 8.73 -39.01 -0.34 -3.88 16 11 C 0.08 1.91 5.58 -106.64 -0.59 1.31 16 12 C -0.42 -10.07 8.14 -37.85 -0.31 -10.38 16 13 H 0.09 2.06 6.86 -52.49 -0.36 1.70 16 14 C 0.07 1.58 5.18 -17.33 -0.09 1.49 16 15 N -0.77 -18.03 10.95 55.55 0.61 -17.42 16 16 Si 0.92 16.69 29.59 -169.99 -5.03 11.66 16 17 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 18 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 19 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 20 C 0.01 0.28 6.86 -81.81 -0.56 -0.28 16 21 C -0.07 -1.47 9.58 36.01 0.34 -1.13 16 22 N -0.43 -10.63 8.21 -5.40 -0.04 -10.67 16 23 C 0.10 1.99 7.22 -38.99 -0.28 1.71 16 24 F -0.11 -2.34 14.50 2.25 0.03 -2.30 16 25 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.87 7.63 -51.93 -0.40 0.48 16 27 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.14 2.28 6.15 -52.49 -0.32 1.96 16 30 H 0.10 2.03 6.15 -52.49 -0.32 1.71 16 31 H 0.13 3.13 6.26 -52.49 -0.33 2.80 16 32 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 33 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.33 6.76 -51.93 -0.35 0.97 16 LS Contribution 316.17 15.07 4.76 4.76 Total: -1.00 -26.39 316.17 -9.12 -35.51 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -3.33 Total: 5.01 kcal Atomic # 6 Polarization: -19.36 SS G_CDS: -4.62 Total: -23.98 kcal Atomic # 7 Polarization: -28.66 SS G_CDS: 0.56 Total: -28.09 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.03 Total: -2.30 kcal Atomic # 14 Polarization: 16.69 SS G_CDS: -5.03 Total: 11.66 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.50 Total: -2.57 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -26.39 -9.12 -35.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242226708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.305 kcal (2) G-P(sol) polarization free energy of solvation -26.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds