Wall clock time and date at job start Fri Apr 10 2020 21:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38315 * 119.93472 * 2 1 4 4 C 1.38524 * 120.31411 * 179.97438 * 3 2 1 5 5 Cl 1.73599 * 119.90543 * 180.02562 * 4 3 2 6 6 C 1.38025 * 120.18426 * 0.02562 * 4 3 2 7 7 C 1.39594 * 119.86454 * 0.02562 * 6 4 3 8 8 C 1.47890 * 120.15709 * 179.97438 * 7 6 4 9 9 C 1.39937 * 119.45342 * 0.02857 * 8 7 6 10 10 C 1.36580 * 119.46801 * 179.97438 * 9 8 7 11 11 C 1.41320 * 118.41726 * 359.97438 * 10 9 8 12 12 C 1.41037 * 120.55466 * 180.02562 * 11 10 9 13 13 H 1.07998 * 120.00184 * 154.63158 * 12 11 10 14 14 C 1.40018 * 119.99817 * 334.64056 * 12 11 10 15 15 N 1.30796 * 120.00044 * 343.62928 * 14 12 11 16 16 Si 1.86799 * 119.99932 * 163.63127 * 14 12 11 17 17 H 1.48495 * 109.47240 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47014 * 119.99972 * 16 14 12 19 19 H 1.48499 * 109.47023 * 239.99885 * 16 14 12 20 20 C 1.40947 * 118.89454 * 0.02562 * 11 10 9 21 21 C 1.50700 * 119.79784 * 180.02562 * 20 11 10 22 22 N 1.31265 * 120.40822 * 359.73712 * 20 11 10 23 23 C 1.38195 * 119.93605 * 180.02562 * 2 1 3 24 24 F 1.35103 * 120.08831 * 0.02562 * 23 2 1 25 25 H 1.08999 * 109.47120 * 89.99682 * 1 2 3 26 26 H 1.09004 * 109.46666 * 210.00007 * 1 2 3 27 27 H 1.09004 * 109.46562 * 329.99689 * 1 2 3 28 28 H 1.07997 * 119.83944 * 359.72244 * 3 2 1 29 29 H 1.07999 * 120.06788 * 180.02562 * 6 4 3 30 30 H 1.07999 * 120.26511 * 359.95160 * 9 8 7 31 31 H 1.07997 * 120.79588 * 179.97438 * 10 9 8 32 32 H 0.97001 * 120.00186 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.47099 * 89.99576 * 21 20 11 34 34 H 1.08998 * 109.47437 * 209.99467 * 21 20 11 35 35 H 1.08999 * 109.47350 * 330.00156 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1972 1.1986 0.0000 4 6 3.5824 1.2078 0.0005 5 17 4.4380 2.7183 0.0012 6 6 4.2843 0.0193 0.0005 7 6 3.5954 -1.1948 -0.0005 8 6 4.3409 -2.4720 -0.0011 9 6 5.7401 -2.4521 0.0000 10 6 6.4289 -3.6315 0.0000 11 6 5.6948 -4.8390 -0.0006 12 6 6.3601 -6.0826 -0.0001 13 1 5.8694 -6.9574 0.4002 14 6 7.6569 -6.1829 -0.5184 15 7 8.1314 -5.2327 -1.2818 16 14 8.7094 -7.6738 -0.1196 17 1 7.9466 -8.5979 0.7575 18 1 9.0742 -8.3730 -1.3779 19 1 9.9443 -7.2354 0.5790 20 6 4.2865 -4.7799 -0.0017 21 6 3.4835 -6.0552 -0.0018 22 7 3.6702 -3.6210 0.0030 23 6 2.1966 -1.1976 -0.0005 24 9 1.5216 -2.3679 -0.0016 25 1 -0.3633 0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3632 0.8900 0.5139 28 1 1.6536 2.1318 -0.0045 29 1 5.3642 0.0287 0.0014 30 1 6.2710 -1.5116 0.0006 31 1 7.5088 -3.6411 0.0005 32 1 9.0297 -5.3024 -1.6411 33 1 3.2891 -6.3622 1.0259 34 1 2.5371 -5.8886 -0.5164 35 1 4.0433 -6.8371 -0.5148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242226708.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:27:20 Heat of formation + Delta-G solvation = -27.305419 kcal Electronic energy + Delta-G solvation = -21676.842182 eV Core-core repulsion = 18192.547221 eV Total energy + Delta-G solvation = -3484.294961 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 305.068 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.59229 -40.75521 -39.73685 -37.44642 -36.19640 -34.60393 -33.03215 -32.66775 -30.99013 -28.90440 -27.96438 -26.96412 -24.37992 -23.16996 -22.44630 -21.44277 -19.33437 -18.50964 -17.89552 -17.32154 -17.05042 -16.55306 -16.31080 -15.87953 -15.61633 -14.96109 -14.62530 -14.47369 -14.40349 -14.06187 -13.77276 -13.73030 -13.51300 -13.46107 -13.34927 -13.11870 -12.91413 -12.78242 -12.67027 -12.29765 -12.18373 -11.95661 -11.83439 -11.62547 -11.27959 -10.34851 -10.13090 -9.92635 -9.51419 -9.05329 -8.76471 -6.45155 -0.23845 0.05312 0.85769 1.06875 1.07819 1.38936 1.50801 1.55228 2.14015 2.37775 2.77671 3.33912 3.51494 3.64355 3.69885 4.01166 4.09153 4.19037 4.39408 4.51793 4.57841 4.64026 4.78009 4.86288 4.95527 4.95672 4.99170 5.07378 5.11598 5.13141 5.19079 5.24908 5.31497 5.46682 5.67029 5.83212 5.93629 5.95054 6.41413 6.63509 6.71384 7.67101 8.12087 Molecular weight = 305.07amu Principal moments of inertia in cm(-1) A = 0.019822 B = 0.003966 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1412.239440 B = 7058.753519 C = 8382.224211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.104 4.104 3 C -0.096 4.096 4 C -0.034 4.034 5 Cl -0.056 7.056 6 C -0.109 4.109 7 C -0.029 4.029 8 C -0.026 4.026 9 C -0.125 4.125 10 C -0.164 4.164 11 C 0.047 3.953 12 C -0.449 4.449 13 H 0.098 0.902 14 C 0.034 3.966 15 N -0.804 5.804 16 Si 0.990 3.010 17 H -0.251 1.251 18 H -0.264 1.264 19 H -0.264 1.264 20 C -0.016 4.016 21 C -0.063 4.063 22 N -0.450 5.450 23 C 0.080 3.920 24 F -0.130 7.130 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.173 0.827 29 H 0.141 0.859 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.297 0.703 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.244 9.220 1.757 11.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.106 4.106 3 C -0.115 4.115 4 C -0.061 4.061 5 Cl -0.027 7.027 6 C -0.128 4.128 7 C -0.031 4.031 8 C -0.159 4.159 9 C -0.145 4.145 10 C -0.188 4.188 11 C 0.042 3.958 12 C -0.477 4.477 13 H 0.116 0.884 14 C -0.184 4.184 15 N -0.428 5.428 16 Si 0.809 3.191 17 H -0.174 1.174 18 H -0.189 1.189 19 H -0.188 1.188 20 C -0.162 4.162 21 C -0.121 4.121 22 N -0.158 5.158 23 C 0.060 3.940 24 F -0.109 7.109 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.120 0.880 28 H 0.190 0.810 29 H 0.159 0.841 30 H 0.143 0.857 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.888 9.423 1.608 11.782 hybrid contribution 1.828 -0.770 -0.066 1.985 sum -5.060 8.653 1.542 10.141 Atomic orbital electron populations 1.20786 0.87374 1.04342 1.03886 1.20096 0.98676 0.90148 1.01652 1.21004 0.91191 0.98535 1.00767 1.20717 0.92899 0.86728 1.05757 1.98353 1.77340 1.30077 1.96978 1.20933 1.00812 0.89091 1.01993 1.18721 0.91546 0.92349 1.00477 1.19021 0.90363 0.90500 1.16054 1.21487 0.94056 0.98568 1.00414 1.21339 0.99884 0.91944 1.05669 1.18808 0.92445 0.94881 0.89628 1.20039 0.99070 0.95654 1.32918 0.88423 1.26997 0.98737 1.01103 0.91590 1.69824 1.17964 1.34090 1.20900 0.85022 0.77653 0.76945 0.79449 1.17428 1.18857 1.18828 1.21606 0.91568 0.93221 1.09784 1.20234 0.97871 0.92588 1.01376 1.66979 1.41309 0.98091 1.09451 1.17980 0.89199 0.82006 1.04850 1.91482 1.79419 1.46534 1.93443 0.89570 0.91859 0.87983 0.81004 0.84086 0.85682 0.86290 0.89229 0.91964 0.92513 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.83 71.24 0.70 -1.49 16 2 C -0.10 -2.94 5.88 -19.86 -0.12 -3.05 16 3 C -0.10 -2.34 9.47 22.36 0.21 -2.12 16 4 C -0.03 -0.95 6.31 22.29 0.14 -0.81 16 5 Cl -0.06 -1.32 28.95 -2.72 -0.08 -1.39 16 6 C -0.11 -3.67 9.19 22.55 0.21 -3.47 16 7 C -0.03 -1.18 5.88 -20.00 -0.12 -1.30 16 8 C -0.03 -1.24 6.74 41.93 0.28 -0.96 16 9 C -0.13 -5.96 9.38 22.29 0.21 -5.75 16 10 C -0.16 -8.44 8.73 22.64 0.20 -8.24 16 11 C 0.05 2.48 5.58 -21.17 -0.12 2.37 16 12 C -0.45 -22.15 8.14 23.39 0.19 -21.96 16 13 H 0.10 4.51 6.86 -2.91 -0.02 4.49 16 14 C 0.03 1.57 5.18 85.28 0.44 2.01 16 15 N -0.80 -38.75 10.95 21.84 0.24 -38.51 16 16 Si 0.99 34.34 29.59 68.60 2.03 36.37 16 17 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 18 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 19 H -0.26 -8.87 7.11 99.48 0.71 -8.17 16 20 C -0.02 -0.80 6.86 43.31 0.30 -0.50 16 21 C -0.06 -2.68 9.58 71.24 0.68 -2.00 16 22 N -0.45 -23.10 8.21 -171.00 -1.40 -24.50 16 23 C 0.08 3.02 7.22 22.66 0.16 3.19 16 24 F -0.13 -5.51 14.50 44.97 0.65 -4.86 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.06 1.42 7.63 -2.39 -0.02 1.40 16 27 H 0.10 1.43 8.08 -2.39 -0.02 1.41 16 28 H 0.17 2.86 8.06 -2.91 -0.02 2.83 16 29 H 0.14 4.57 6.15 -2.91 -0.02 4.56 16 30 H 0.13 5.12 6.15 -2.91 -0.02 5.10 16 31 H 0.12 6.19 6.26 -2.91 -0.02 6.17 16 32 H 0.30 12.72 8.30 -92.71 -0.77 11.95 16 33 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.90 6.76 -2.39 -0.02 2.88 16 Total: -1.00 -59.97 316.17 5.95 -54.01 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 1.14 Total: 22.98 kcal Atomic # 6 Polarization: -47.47 SS G_CDS: 3.37 Total: -44.10 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -1.16 Total: -63.01 kcal Atomic # 9 Polarization: -5.51 SS G_CDS: 0.65 Total: -4.86 kcal Atomic # 14 Polarization: 34.34 SS G_CDS: 2.03 Total: 36.37 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -59.97 5.95 -54.01 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242226708.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.707 kcal (2) G-P(sol) polarization free energy of solvation -59.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds