Wall clock time and date at job start Fri Apr 10 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86804 * 120.00084 * 2 1 4 4 H 1.48495 * 109.47013 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46989 * 300.00355 * 3 2 1 6 6 H 1.48497 * 109.46644 * 60.00334 * 3 2 1 7 7 C 1.40032 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99982 * 196.67385 * 7 2 1 9 9 C 1.41536 * 120.00326 * 16.67745 * 7 2 1 10 10 C 1.41184 * 120.99892 * 203.70469 * 9 7 2 11 11 C 1.37584 * 119.01431 * 180.02562 * 10 9 7 12 12 N 1.32075 * 121.11346 * 0.02562 * 11 10 9 13 13 C 1.32472 * 122.23023 * 359.97438 * 12 11 10 14 14 N 1.39475 * 119.58133 * 180.02562 * 13 12 11 15 15 C 1.34775 * 119.99480 * 5.16886 * 14 13 12 16 16 O 1.21278 * 120.00730 * 355.13260 * 15 14 13 17 17 C 1.50709 * 119.99590 * 175.13432 * 15 14 13 18 18 H 1.08996 * 110.86068 * 58.79700 * 17 15 14 19 19 C 1.54740 * 110.97123 * 294.99895 * 17 15 14 20 20 C 1.51686 * 102.54834 * 217.67230 * 19 17 15 21 21 C 1.47474 * 125.86374 * 195.35764 * 20 19 17 22 22 O 1.21474 * 119.99723 * 359.97438 * 21 20 19 23 23 O 1.34755 * 120.00385 * 179.97438 * 21 20 19 24 24 N 1.29055 * 108.27372 * 15.39246 * 20 19 17 25 25 O 1.41386 * 112.87927 * 0.31682 * 24 20 19 26 26 C 1.38596 * 120.84007 * 0.27490 * 13 12 11 27 27 H 0.96999 * 120.00272 * 359.97438 * 1 2 3 28 28 H 1.08003 * 120.48752 * 0.04068 * 10 9 7 29 29 H 1.08001 * 119.44528 * 179.97438 * 11 10 9 30 30 H 0.96996 * 119.99811 * 185.17653 * 14 13 12 31 31 H 1.09005 * 110.79247 * 335.93436 * 19 17 15 32 32 H 1.08995 * 110.79467 * 99.40693 * 19 17 15 33 33 H 0.96694 * 117.00669 * 179.97438 * 23 21 20 34 34 H 1.08006 * 120.59920 * 179.72868 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6178 0.0000 4 1 3.7013 1.3464 -0.0006 5 1 1.8826 2.3965 -1.2125 6 1 1.8827 2.3963 1.2125 7 6 2.0075 -1.2127 -0.0005 8 1 3.0535 -1.2325 0.2678 9 6 1.3445 -2.4126 -0.3528 10 6 1.8225 -3.6647 0.0910 11 6 1.1465 -4.8053 -0.2763 12 7 0.0656 -4.7444 -1.0328 13 6 -0.4234 -3.5953 -1.4750 14 7 -1.5691 -3.5952 -2.2705 15 6 -2.2311 -4.7467 -2.4986 16 8 -1.7830 -5.7958 -2.0868 17 6 -3.5282 -4.7309 -3.2658 18 1 -3.3859 -4.3079 -4.2602 19 6 -4.6223 -3.9612 -2.4879 20 6 -5.8684 -4.7756 -2.7792 21 6 -7.2588 -4.3365 -2.5579 22 8 -7.4819 -3.2325 -2.1029 23 8 -8.2817 -5.1599 -2.8604 24 7 -5.5030 -5.9189 -3.2533 25 8 -4.0984 -6.0532 -3.3430 26 6 0.1920 -2.3937 -1.1616 27 1 -0.4850 0.8400 0.0004 28 1 2.7055 -3.7261 0.7098 29 1 1.5062 -5.7669 0.0589 30 1 -1.8893 -2.7663 -2.6594 31 1 -4.4054 -3.9546 -1.4196 32 1 -4.7260 -2.9454 -2.8691 33 1 -9.1752 -4.8282 -2.6977 34 1 -0.2074 -1.4595 -1.5279 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574480054.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:27:08 Heat of formation + Delta-G solvation = -74.402115 kcal Electronic energy + Delta-G solvation = -23691.833023 eV Core-core repulsion = 19784.706593 eV Total energy + Delta-G solvation = -3907.126430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.089 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -42.25284 -41.31502 -40.62834 -39.33620 -37.37681 -36.20502 -35.62437 -34.52736 -32.73803 -32.34585 -30.24963 -27.92803 -26.63869 -26.02855 -23.89450 -23.29551 -21.67127 -21.47409 -19.60537 -19.36038 -19.11222 -18.60221 -17.54956 -17.18557 -17.12310 -16.88507 -16.73663 -16.08123 -15.96514 -15.63846 -15.45487 -14.78167 -14.55541 -14.48419 -14.34155 -14.23681 -13.95363 -13.27159 -13.16183 -12.91987 -12.79420 -12.67220 -12.47339 -12.22067 -12.10311 -11.89934 -11.59475 -11.45567 -11.17108 -10.87015 -9.96296 -9.64530 -8.92479 -8.66235 -6.56374 -0.57325 0.64637 0.95662 0.98471 1.41489 1.43694 1.43798 1.53408 1.57970 1.72102 2.20892 2.22382 2.78157 2.83945 3.05456 3.34834 3.55271 3.71526 3.76891 4.14087 4.16383 4.37879 4.46700 4.71517 4.80608 4.91288 5.05946 5.18556 5.22446 5.45700 5.56189 5.60817 5.89659 6.10099 6.40266 6.53317 6.70373 6.77477 6.82618 7.11638 7.79175 8.25748 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.017792 B = 0.003408 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.372513 B = 8213.203908 C = 9492.443786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.043 3.957 3 Si 0.985 3.015 4 H -0.261 1.261 5 H -0.260 1.260 6 H -0.267 1.267 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.114 3.886 10 C -0.297 4.297 11 C 0.114 3.886 12 N -0.584 5.584 13 C 0.332 3.668 14 N -0.637 5.637 15 C 0.504 3.496 16 O -0.507 6.507 17 C 0.036 3.964 18 H 0.165 0.835 19 C -0.119 4.119 20 C 0.071 3.929 21 C 0.578 3.422 22 O -0.499 6.499 23 O -0.490 6.490 24 N -0.222 5.222 25 O -0.179 6.179 26 C -0.253 4.253 27 H 0.294 0.706 28 H 0.115 0.885 29 H 0.148 0.852 30 H 0.429 0.571 31 H 0.110 0.890 32 H 0.165 0.835 33 H 0.447 0.553 34 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 1.406 -7.212 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.175 4.175 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.184 1.184 6 H -0.192 1.192 7 C -0.512 4.512 8 H 0.101 0.899 9 C 0.105 3.895 10 C -0.321 4.321 11 C -0.040 4.040 12 N -0.304 5.304 13 C 0.107 3.893 14 N -0.286 5.286 15 C 0.288 3.712 16 O -0.377 6.377 17 C -0.026 4.026 18 H 0.182 0.818 19 C -0.158 4.158 20 C -0.122 4.122 21 C 0.418 3.582 22 O -0.384 6.384 23 O -0.304 6.304 24 N 0.033 4.967 25 O -0.200 6.200 26 C -0.279 4.279 27 H 0.105 0.895 28 H 0.133 0.867 29 H 0.165 0.835 30 H 0.268 0.732 31 H 0.129 0.871 32 H 0.183 0.817 33 H 0.312 0.688 34 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -14.058 -1.005 -7.498 15.964 hybrid contribution 0.608 2.469 0.727 2.644 sum -13.450 1.464 -6.771 15.129 Atomic orbital electron populations 1.69781 1.08911 1.31107 1.33411 1.26765 0.95574 1.04399 0.90772 0.85100 0.79332 0.75875 0.79100 1.18430 1.18430 1.19174 1.19884 0.98173 0.91640 1.41524 0.89934 1.17998 0.90743 0.93197 0.87515 1.22095 1.05917 0.93783 1.10279 1.22163 0.90494 0.97902 0.93418 1.67314 1.16446 1.27379 1.19267 1.18343 0.87995 0.90319 0.92637 1.43177 1.24860 1.11374 1.49230 1.20621 0.85873 0.83979 0.80748 1.90837 1.67205 1.31466 1.48231 1.23831 0.91534 0.84795 1.02441 0.81769 1.22921 0.85102 1.03475 1.04332 1.24975 0.94779 0.94852 0.97640 1.18799 0.83613 0.81680 0.74138 1.91014 1.85022 1.21466 1.40913 1.84599 1.20246 1.47364 1.78200 1.78635 0.93252 1.17441 1.07363 1.91450 1.10818 1.25786 1.91967 1.21516 1.02831 0.95718 1.07817 0.89487 0.86697 0.83518 0.73204 0.87135 0.81723 0.68791 0.85233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -37.33 10.92 21.84 0.24 -37.09 16 2 C 0.04 1.95 5.20 85.29 0.44 2.39 16 3 Si 0.99 34.27 29.59 68.60 2.03 36.30 16 4 H -0.26 -9.06 7.11 99.48 0.71 -8.36 16 5 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 6 H -0.27 -8.98 7.11 99.48 0.71 -8.28 16 7 C -0.48 -24.05 9.12 23.52 0.21 -23.83 16 8 H 0.08 3.99 7.90 -2.91 -0.02 3.96 16 9 C 0.11 5.86 5.60 -21.11 -0.12 5.74 16 10 C -0.30 -14.44 9.90 22.84 0.23 -14.21 16 11 C 0.11 5.42 11.15 84.50 0.94 6.36 16 12 N -0.58 -29.48 7.85 -193.54 -1.52 -31.00 16 13 C 0.33 15.44 7.42 132.75 0.98 16.43 16 14 N -0.64 -22.34 5.38 -308.65 -1.66 -24.00 16 15 C 0.50 17.75 7.10 87.66 0.62 18.37 16 16 O -0.51 -23.67 14.84 15.00 0.22 -23.45 16 17 C 0.04 0.85 4.24 30.44 0.13 0.98 16 18 H 0.17 2.53 8.14 -2.39 -0.02 2.51 16 19 C -0.12 -2.25 6.43 30.76 0.20 -2.05 16 20 C 0.07 1.43 7.30 45.72 0.33 1.77 16 21 C 0.58 9.75 8.34 70.26 0.59 10.33 16 22 O -0.50 -10.18 17.74 19.92 0.35 -9.83 16 23 O -0.49 -5.62 13.43 -56.65 -0.76 -6.39 16 24 N -0.22 -5.70 12.51 -42.37 -0.53 -6.23 16 25 O -0.18 -5.45 11.82 -20.28 -0.24 -5.69 16 26 C -0.25 -12.32 8.62 22.98 0.20 -12.12 16 27 H 0.29 12.02 8.29 -92.71 -0.77 11.25 16 28 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 29 H 0.15 6.08 8.06 -2.91 -0.02 6.06 16 30 H 0.43 11.08 8.70 -92.71 -0.81 10.27 16 31 H 0.11 2.41 7.90 -2.38 -0.02 2.39 16 32 H 0.17 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.45 0.13 9.11 -74.06 -0.67 -0.54 16 34 H 0.13 6.13 6.20 -2.91 -0.02 6.11 16 Total: -1.00 -75.40 316.33 2.62 -72.79 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: -0.27 Total: 24.43 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.76 Total: 10.15 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -3.47 Total: -98.32 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.42 Total: -45.35 kcal Atomic # 14 Polarization: 34.27 SS G_CDS: 2.03 Total: 36.30 kcal Total: -75.40 2.62 -72.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574480054.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.617 kcal (2) G-P(sol) polarization free energy of solvation -75.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds