Wall clock time and date at job start Fri Apr 10 2020 21:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00189 * 2 1 4 4 H 1.48502 * 109.46620 * 269.99457 * 3 2 1 5 5 H 1.48504 * 109.46857 * 29.99401 * 3 2 1 6 6 H 1.48496 * 109.47062 * 149.99513 * 3 2 1 7 7 C 1.37874 * 120.00240 * 179.97438 * 2 1 3 8 8 C 1.51278 * 120.84910 * 0.02562 * 7 2 1 9 9 C 1.53229 * 108.53754 * 231.32482 * 8 7 2 10 10 C 1.52957 * 109.40343 * 305.37208 * 9 8 7 11 11 H 1.08996 * 109.41619 * 303.56184 * 10 9 8 12 12 N 1.46504 * 109.40977 * 183.70322 * 10 9 8 13 13 C 1.34782 * 119.99516 * 154.86111 * 12 10 9 14 14 O 1.21724 * 120.00283 * 359.97438 * 13 12 10 15 15 C 1.46460 * 119.99740 * 180.02562 * 13 12 10 16 16 C 1.37554 * 125.82413 * 179.97438 * 15 13 12 17 17 C 1.40283 * 107.44984 * 179.97438 * 16 15 13 18 18 S 1.76105 * 143.71489 * 179.97438 * 17 16 15 19 19 C 1.70758 * 90.54286 * 180.02562 * 18 17 16 20 20 N 1.28514 * 111.07407 * 0.02562 * 19 18 17 21 21 C 1.33171 * 117.89083 * 359.97438 * 20 19 18 22 22 N 1.37985 * 125.82382 * 359.97353 * 15 13 12 23 23 H 0.96999 * 125.63724 * 0.02562 * 22 15 13 24 24 C 1.52959 * 109.76342 * 63.63446 * 10 9 8 25 25 C 1.51268 * 120.85532 * 179.97438 * 7 2 1 26 26 H 0.96996 * 119.99717 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.62595 * 111.61095 * 8 7 2 28 28 H 1.08996 * 109.78077 * 351.12976 * 8 7 2 29 29 H 1.09001 * 109.48542 * 185.38932 * 9 8 7 30 30 H 1.09003 * 109.49280 * 65.35568 * 9 8 7 31 31 H 0.96998 * 120.00146 * 334.85284 * 12 10 9 32 32 H 1.08001 * 126.27562 * 359.97216 * 16 15 13 33 33 H 1.08005 * 124.45946 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.48059 * 56.34314 * 24 10 9 35 35 H 1.08992 * 109.48636 * 176.38623 * 24 10 9 36 36 H 1.09002 * 109.62638 * 248.39253 * 25 7 2 37 37 H 1.08999 * 109.62197 * 8.76724 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5740 -3.9111 -0.0008 12 7 3.8597 -4.4075 2.0161 13 6 5.0159 -5.0697 1.8124 14 8 5.6278 -4.9199 0.7709 15 6 5.5353 -5.9704 2.8439 16 6 6.6969 -6.7026 2.7627 17 6 6.8221 -7.4269 3.9575 18 16 7.8418 -8.5726 4.8229 19 6 6.7614 -8.5603 6.1452 20 7 5.7672 -7.7771 5.9223 21 6 5.7327 -7.1297 4.7591 22 7 4.9430 -6.2292 4.0630 23 1 4.1110 -5.8443 4.3802 24 6 3.9894 -2.1305 1.1363 25 6 3.5170 -1.2165 0.0000 26 1 -0.4849 0.8400 -0.0004 27 1 1.4200 -3.0193 -0.9538 28 1 0.2029 -2.3437 0.1582 29 1 1.3706 -4.3733 1.0901 30 1 1.5898 -2.9199 2.0942 31 1 3.3720 -4.5271 2.8460 32 1 7.3862 -6.7173 1.9314 33 1 6.8956 -9.1356 7.0494 34 1 3.7039 -1.6979 2.0952 35 1 5.0735 -2.2332 1.0920 36 1 3.8771 -1.6006 -0.9545 37 1 3.8982 -0.2073 0.1556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155524708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:29:08 Heat of formation + Delta-G solvation = 37.717184 kcal Electronic energy + Delta-G solvation = -21871.015190 eV Core-core repulsion = 18547.336583 eV Total energy + Delta-G solvation = -3323.678607 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.094 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.88064 -39.55631 -37.56336 -36.73048 -33.92497 -31.82212 -31.22204 -29.76511 -29.11384 -27.21785 -25.14199 -23.31718 -21.80699 -21.55641 -20.95546 -20.15670 -19.72125 -19.12474 -17.22933 -16.15148 -15.99662 -15.81576 -15.57054 -15.22629 -14.64180 -14.45171 -14.29951 -13.73596 -13.36007 -13.24882 -12.87328 -12.62701 -12.35068 -12.16828 -11.72514 -11.67815 -11.10133 -10.90360 -10.80356 -10.50415 -10.33035 -10.10081 -10.00237 -9.96644 -9.60599 -9.12459 -8.97584 -8.66057 -8.55527 -8.45073 -8.22406 -6.15682 -4.06982 0.26816 0.96635 1.54394 1.69659 2.21530 2.53794 3.22858 3.25608 3.29748 3.33159 3.34024 4.00679 4.34184 4.42211 4.67879 4.96369 5.11762 5.31538 5.45421 5.61644 5.76997 5.90591 6.07640 6.24182 6.32172 6.39517 6.60149 6.62795 6.68421 6.80622 6.87123 7.03456 7.13477 7.35507 7.37799 7.57864 7.58684 7.65312 7.78107 8.22201 8.31755 8.90159 9.49103 10.93736 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.002790 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.910437 B =10035.196025 C =10193.670324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.076 3.924 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.264 1.264 7 C -0.490 4.490 8 C 0.013 3.987 9 C -0.115 4.115 10 C 0.154 3.846 11 H 0.084 0.916 12 N -0.718 5.718 13 C 0.581 3.419 14 O -0.518 6.518 15 C 0.032 3.968 16 C -0.068 4.068 17 C -0.252 4.252 18 S 0.150 5.850 19 C 0.055 3.945 20 N -0.464 5.464 21 C 0.219 3.781 22 N -0.525 5.525 23 H 0.424 0.576 24 C -0.113 4.113 25 C -0.019 4.019 26 H 0.265 0.735 27 H 0.007 0.993 28 H 0.061 0.939 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.389 0.611 32 H 0.162 0.838 33 H 0.208 0.792 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.020 0.980 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.153 -15.946 11.665 23.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.509 4.509 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.052 3.948 11 H 0.102 0.898 12 N -0.367 5.367 13 C 0.366 3.634 14 O -0.394 6.394 15 C -0.084 4.084 16 C -0.099 4.099 17 C -0.377 4.377 18 S 0.398 5.602 19 C -0.248 4.248 20 N -0.181 5.181 21 C -0.013 4.013 22 N -0.131 5.131 23 H 0.263 0.737 24 C -0.152 4.152 25 C -0.057 4.057 26 H 0.075 0.925 27 H 0.026 0.974 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.222 0.778 32 H 0.180 0.820 33 H 0.225 0.775 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 12.734 -16.063 11.154 23.337 hybrid contribution -1.025 1.599 0.651 2.007 sum 11.710 -14.464 11.805 22.039 Atomic orbital electron populations 1.69828 1.06155 1.27017 1.49780 1.24844 0.94719 0.98622 0.94439 0.86676 0.79979 0.83190 0.78626 1.20312 1.21660 1.18925 1.20047 0.89402 0.91431 1.49996 1.19334 0.98726 0.92775 0.91601 1.21956 0.92059 0.98758 1.02560 1.21190 0.94696 0.88875 0.90074 0.89827 1.46398 1.23108 1.45657 1.21508 1.16873 0.81590 0.79548 0.85404 1.90888 1.58166 1.64548 1.25800 1.20725 0.96724 1.04400 0.86546 1.20300 0.96738 0.96474 0.96374 1.23715 1.01687 1.09543 1.02731 1.83624 1.25283 1.41154 1.10186 1.28031 0.92644 1.00223 1.03866 1.64890 1.25545 1.09586 1.18048 1.18219 0.92951 0.99198 0.90895 1.41588 1.21764 1.36379 1.13355 0.73674 1.21913 0.97373 0.94915 1.01015 1.19799 0.96566 0.95535 0.93790 0.92541 0.97438 0.92023 0.94518 0.92675 0.77776 0.82004 0.77550 0.93006 0.94310 0.96125 0.94506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 12.74 55.43 0.71 -24.32 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.77 27.53 -169.99 -4.68 16.09 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 6 H -0.26 -6.00 6.11 56.52 0.35 -5.65 16 7 C -0.49 -12.54 5.51 -98.92 -0.55 -13.09 16 8 C 0.01 0.32 5.96 -27.48 -0.16 0.16 16 9 C -0.11 -2.23 5.40 -26.63 -0.14 -2.38 16 10 C 0.15 2.87 2.35 -67.97 -0.16 2.71 16 11 H 0.08 1.72 7.57 -51.93 -0.39 1.32 16 12 N -0.72 -10.72 5.07 -55.22 -0.28 -11.00 16 13 C 0.58 9.09 7.74 -12.95 -0.10 8.99 16 14 O -0.52 -9.92 16.52 5.17 0.09 -9.83 16 15 C 0.03 0.42 7.02 -82.03 -0.58 -0.16 16 16 C -0.07 -0.86 10.60 -39.06 -0.41 -1.28 16 17 C -0.25 -2.97 7.34 -38.73 -0.28 -3.26 16 18 S 0.15 1.22 23.19 -107.50 -2.49 -1.28 16 19 C 0.05 0.43 12.15 51.37 0.62 1.06 16 20 N -0.46 -5.23 10.53 -14.06 -0.15 -5.38 16 21 C 0.22 2.68 8.83 -155.06 -1.37 1.31 16 22 N -0.52 -5.96 6.12 -8.89 -0.05 -6.01 16 23 H 0.42 3.76 8.14 -40.82 -0.33 3.43 16 24 C -0.11 -2.30 5.50 -26.60 -0.15 -2.45 16 25 C -0.02 -0.44 5.60 -27.46 -0.15 -0.59 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 1.60 7.08 -51.93 -0.37 1.24 16 29 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.39 4.62 7.68 -40.82 -0.31 4.30 16 32 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.21 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.04 0.85 4.59 -51.93 -0.24 0.61 16 LS Contribution 319.83 15.07 4.82 4.82 Total: -1.00 -31.22 319.83 -9.79 -41.01 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -4.22 Total: 2.92 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -3.53 Total: -7.03 kcal Atomic # 7 Polarization: -46.93 SS G_CDS: 0.22 Total: -46.70 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: 0.09 Total: -9.83 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.68 Total: 16.09 kcal Atomic # 16 Polarization: 1.22 SS G_CDS: -2.49 Total: -1.28 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.22 -9.79 -41.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155524708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.732 kcal (2) G-P(sol) polarization free energy of solvation -31.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.015 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds