Wall clock time and date at job start Fri Apr 10 2020 21:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00189 * 2 1 4 4 H 1.48502 * 109.46620 * 269.99457 * 3 2 1 5 5 H 1.48504 * 109.46857 * 29.99401 * 3 2 1 6 6 H 1.48496 * 109.47062 * 149.99513 * 3 2 1 7 7 C 1.37874 * 120.00240 * 179.97438 * 2 1 3 8 8 C 1.51278 * 120.84910 * 0.02562 * 7 2 1 9 9 C 1.53229 * 108.53754 * 231.32482 * 8 7 2 10 10 C 1.52957 * 109.40343 * 305.37208 * 9 8 7 11 11 H 1.08996 * 109.41619 * 303.56184 * 10 9 8 12 12 N 1.46504 * 109.40977 * 183.70322 * 10 9 8 13 13 C 1.34782 * 119.99516 * 154.86111 * 12 10 9 14 14 O 1.21724 * 120.00283 * 359.97438 * 13 12 10 15 15 C 1.46460 * 119.99740 * 180.02562 * 13 12 10 16 16 C 1.37554 * 125.82413 * 179.97438 * 15 13 12 17 17 C 1.40283 * 107.44984 * 179.97438 * 16 15 13 18 18 S 1.76105 * 143.71489 * 179.97438 * 17 16 15 19 19 C 1.70758 * 90.54286 * 180.02562 * 18 17 16 20 20 N 1.28514 * 111.07407 * 0.02562 * 19 18 17 21 21 C 1.33171 * 117.89083 * 359.97438 * 20 19 18 22 22 N 1.37985 * 125.82382 * 359.97353 * 15 13 12 23 23 H 0.96999 * 125.63724 * 0.02562 * 22 15 13 24 24 C 1.52959 * 109.76342 * 63.63446 * 10 9 8 25 25 C 1.51268 * 120.85532 * 179.97438 * 7 2 1 26 26 H 0.96996 * 119.99717 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.62595 * 111.61095 * 8 7 2 28 28 H 1.08996 * 109.78077 * 351.12976 * 8 7 2 29 29 H 1.09001 * 109.48542 * 185.38932 * 9 8 7 30 30 H 1.09003 * 109.49280 * 65.35568 * 9 8 7 31 31 H 0.96998 * 120.00146 * 334.85284 * 12 10 9 32 32 H 1.08001 * 126.27562 * 359.97216 * 16 15 13 33 33 H 1.08005 * 124.45946 * 179.97438 * 19 18 17 34 34 H 1.09004 * 109.48059 * 56.34314 * 24 10 9 35 35 H 1.08992 * 109.48636 * 176.38623 * 24 10 9 36 36 H 1.09002 * 109.62638 * 248.39253 * 25 7 2 37 37 H 1.08999 * 109.62197 * 8.76724 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5152 0.0005 9 6 1.8229 -3.3826 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5740 -3.9111 -0.0008 12 7 3.8597 -4.4075 2.0161 13 6 5.0159 -5.0697 1.8124 14 8 5.6278 -4.9199 0.7709 15 6 5.5353 -5.9704 2.8439 16 6 6.6969 -6.7026 2.7627 17 6 6.8221 -7.4269 3.9575 18 16 7.8418 -8.5726 4.8229 19 6 6.7614 -8.5603 6.1452 20 7 5.7672 -7.7771 5.9223 21 6 5.7327 -7.1297 4.7591 22 7 4.9430 -6.2292 4.0630 23 1 4.1110 -5.8443 4.3802 24 6 3.9894 -2.1305 1.1363 25 6 3.5170 -1.2165 0.0000 26 1 -0.4849 0.8400 -0.0004 27 1 1.4200 -3.0193 -0.9538 28 1 0.2029 -2.3437 0.1582 29 1 1.3706 -4.3733 1.0901 30 1 1.5898 -2.9199 2.0942 31 1 3.3720 -4.5271 2.8460 32 1 7.3862 -6.7173 1.9314 33 1 6.8956 -9.1356 7.0494 34 1 3.7039 -1.6979 2.0952 35 1 5.0735 -2.2332 1.0920 36 1 3.8771 -1.6006 -0.9545 37 1 3.8982 -0.2073 0.1556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155524708.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:29:06 Heat of formation + Delta-G solvation = 17.135391 kcal Electronic energy + Delta-G solvation = -21871.907684 eV Core-core repulsion = 18547.336583 eV Total energy + Delta-G solvation = -3324.571100 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 305.094 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.75825 -40.82132 -38.67833 -38.08396 -35.52436 -33.55031 -32.17410 -31.52089 -30.26397 -28.74445 -25.99056 -24.63190 -23.44477 -23.11093 -21.85800 -21.40489 -21.07436 -20.23446 -18.41371 -17.78640 -17.28143 -16.75266 -16.44142 -16.42505 -15.99072 -15.79141 -15.61229 -14.99772 -14.68216 -14.55059 -14.29397 -14.17556 -13.98765 -13.54971 -13.38615 -12.81994 -12.69712 -12.61313 -12.42006 -11.99939 -11.87835 -11.46786 -11.37973 -11.30770 -10.89612 -10.72985 -10.67617 -10.56266 -10.07042 -9.41925 -9.07899 -8.18553 -6.12936 -0.52824 0.25646 0.72844 0.84614 1.36582 1.38273 1.41530 1.48872 1.73827 2.01849 2.15318 2.39905 3.09427 3.32051 3.60222 3.63088 3.99543 4.15110 4.30236 4.42738 4.44957 4.66344 4.69057 4.77534 4.93539 5.01158 5.04321 5.05732 5.18705 5.23414 5.36172 5.51438 5.54226 5.63523 5.74049 5.79719 5.92204 6.32610 6.40378 6.64251 6.92842 7.01230 7.45525 8.91900 Molecular weight = 305.09amu Principal moments of inertia in cm(-1) A = 0.035439 B = 0.002790 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.910437 B =10035.196025 C =10193.670324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.026 3.974 3 Si 0.937 3.063 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.251 1.251 7 C -0.499 4.499 8 C 0.008 3.992 9 C -0.101 4.101 10 C 0.167 3.833 11 H 0.065 0.935 12 N -0.707 5.707 13 C 0.588 3.412 14 O -0.558 6.558 15 C 0.013 3.987 16 C -0.068 4.068 17 C -0.287 4.287 18 S 0.199 5.801 19 C 0.075 3.925 20 N -0.499 5.499 21 C 0.216 3.784 22 N -0.519 5.519 23 H 0.433 0.567 24 C -0.107 4.107 25 C -0.021 4.021 26 H 0.263 0.737 27 H -0.001 1.001 28 H 0.034 0.966 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.407 0.593 32 H 0.165 0.835 33 H 0.252 0.748 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.016 0.984 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.028 -17.618 13.971 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.763 3.237 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.175 1.175 7 C -0.518 4.518 8 C -0.030 4.030 9 C -0.140 4.140 10 C 0.063 3.937 11 H 0.083 0.917 12 N -0.357 5.357 13 C 0.374 3.626 14 O -0.437 6.437 15 C -0.102 4.102 16 C -0.099 4.099 17 C -0.411 4.411 18 S 0.447 5.553 19 C -0.226 4.226 20 N -0.217 5.217 21 C -0.016 4.016 22 N -0.126 5.126 23 H 0.274 0.726 24 C -0.146 4.146 25 C -0.059 4.059 26 H 0.073 0.927 27 H 0.017 0.983 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.182 0.818 33 H 0.268 0.732 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.035 0.965 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.614 -17.747 13.484 26.652 hybrid contribution -1.513 1.923 0.011 2.447 sum 13.100 -15.824 13.495 24.579 Atomic orbital electron populations 1.69950 1.07517 1.27506 1.51885 1.25555 0.95330 1.01621 0.94798 0.85866 0.79391 0.79817 0.78587 1.20294 1.21740 1.17522 1.20603 0.90878 0.91990 1.48358 1.19297 0.97318 0.93345 0.93008 1.21717 0.92546 0.99078 1.00642 1.20753 0.93968 0.88650 0.90344 0.91688 1.46037 1.23253 1.44923 1.21454 1.17061 0.80985 0.79201 0.85305 1.90864 1.59270 1.65958 1.27601 1.20161 0.97631 1.05418 0.87018 1.20447 0.96450 0.96104 0.96854 1.24055 1.03198 1.11128 1.02696 1.83511 1.23788 1.39053 1.08907 1.28930 0.90951 0.98019 1.04741 1.65022 1.27346 1.11364 1.17959 1.18568 0.92902 0.98824 0.91332 1.41463 1.22055 1.36384 1.12743 0.72629 1.21794 0.97650 0.95231 0.99892 1.19805 0.95000 0.96334 0.94783 0.92746 0.98262 0.94743 0.92140 0.92307 0.75716 0.81776 0.73231 0.92571 0.93873 0.96543 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.49 12.74 21.45 0.27 -53.21 16 2 C 0.03 1.38 5.46 84.65 0.46 1.84 16 3 Si 0.94 42.76 27.53 68.60 1.89 44.65 16 4 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 6 H -0.25 -10.79 6.11 99.48 0.61 -10.19 16 7 C -0.50 -25.78 5.51 -16.17 -0.09 -25.87 16 8 C 0.01 0.40 5.96 30.11 0.18 0.58 16 9 C -0.10 -3.87 5.40 30.66 0.17 -3.70 16 10 C 0.17 6.09 2.35 44.96 0.11 6.20 16 11 H 0.06 2.67 7.57 -2.39 -0.02 2.65 16 12 N -0.71 -20.30 5.07 -446.82 -2.26 -22.56 16 13 C 0.59 18.06 7.74 86.38 0.67 18.73 16 14 O -0.56 -21.43 16.52 -4.42 -0.07 -21.50 16 15 C 0.01 0.32 7.02 40.16 0.28 0.61 16 16 C -0.07 -1.66 10.60 22.61 0.24 -1.42 16 17 C -0.29 -6.23 7.34 22.82 0.17 -6.06 16 18 S 0.20 2.59 23.19 -56.49 -1.31 1.28 16 19 C 0.08 0.89 12.15 130.73 1.59 2.47 16 20 N -0.50 -9.85 10.53 -198.41 -2.09 -11.94 16 21 C 0.22 4.87 8.83 132.83 1.17 6.05 16 22 N -0.52 -11.08 6.12 -182.05 -1.11 -12.19 16 23 H 0.43 7.04 8.14 -92.71 -0.75 6.28 16 24 C -0.11 -4.25 5.50 30.68 0.17 -4.08 16 25 C -0.02 -0.97 5.60 30.13 0.17 -0.80 16 26 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 27 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 28 H 0.03 1.84 7.08 -2.39 -0.02 1.82 16 29 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 30 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.41 8.93 7.68 -92.71 -0.71 8.21 16 32 H 0.16 3.75 8.06 -2.91 -0.02 3.73 16 33 H 0.25 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.04 1.68 4.59 -2.39 -0.01 1.67 16 Total: -1.00 -68.50 319.83 0.17 -68.33 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -0.43 Total: 12.61 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: 5.28 Total: -5.46 kcal Atomic # 7 Polarization: -94.71 SS G_CDS: -5.19 Total: -99.91 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.07 Total: -21.50 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.89 Total: 44.65 kcal Atomic # 16 Polarization: 2.59 SS G_CDS: -1.31 Total: 1.28 kcal Total: -68.50 0.17 -68.33 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155524708.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.468 kcal (2) G-P(sol) polarization free energy of solvation -68.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds