Wall clock time and date at job start Fri Apr 10 2020 21:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99667 * 2 1 4 4 H 1.48500 * 109.46578 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47113 * 299.99911 * 3 2 1 6 6 H 1.48497 * 109.47113 * 60.00222 * 3 2 1 7 7 C 1.37872 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00060 * 0.02562 * 7 2 1 10 10 O 1.42897 * 113.28447 * 313.06451 * 9 7 2 11 11 C 1.53495 * 114.20952 * 179.97438 * 9 7 2 12 12 N 1.47069 * 87.98587 * 220.15038 * 11 9 7 13 13 C 1.34784 * 136.05474 * 207.08488 * 12 11 9 14 14 O 1.21619 * 119.99987 * 359.72458 * 13 12 11 15 15 C 1.47265 * 119.99868 * 179.97438 * 13 12 11 16 16 C 1.36495 * 127.46595 * 359.68393 * 15 13 12 17 17 O 1.34145 * 109.01709 * 179.85687 * 16 15 13 18 18 C 1.32989 * 111.38234 * 0.35924 * 17 16 15 19 19 C 1.37194 * 108.10528 * 359.85647 * 18 17 16 20 20 C 1.46592 * 122.36807 * 179.77127 * 19 18 17 21 21 O 1.21339 * 122.42879 * 168.86551 * 20 19 18 22 22 C 1.52218 * 115.13413 * 348.82005 * 20 19 18 23 23 C 1.53238 * 108.21652 * 42.13693 * 22 20 19 24 24 C 1.50805 * 129.14901 * 179.85484 * 18 17 16 25 25 C 1.47068 * 87.88651 * 27.34115 * 12 11 9 26 26 H 0.96993 * 120.00055 * 359.97438 * 1 2 3 27 27 H 0.96713 * 113.99877 * 46.93086 * 10 9 7 28 28 H 1.08994 * 113.47293 * 105.36874 * 11 9 7 29 29 H 1.08999 * 113.52128 * 334.93494 * 11 9 7 30 30 H 1.07998 * 125.48920 * 359.97438 * 16 15 13 31 31 H 1.09006 * 109.72726 * 282.45473 * 22 20 19 32 32 H 1.09001 * 109.74377 * 161.83557 * 22 20 19 33 33 H 1.09002 * 109.23895 * 175.47658 * 23 22 20 34 34 H 1.09002 * 109.20407 * 56.06102 * 23 22 20 35 35 H 1.08998 * 109.49415 * 279.36993 * 24 18 17 36 36 H 1.09005 * 109.49299 * 39.41838 * 24 18 17 37 37 H 1.08999 * 113.46642 * 87.43975 * 25 12 11 38 38 H 1.09001 * 113.46436 * 217.87945 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 8 0.1922 -2.5400 0.9591 11 6 2.1489 -3.7442 0.0005 12 7 1.2074 -4.3593 -0.9472 13 6 0.8320 -5.6140 -1.2659 14 8 1.3336 -6.5626 -0.6936 15 6 -0.1814 -5.8363 -2.3110 16 6 -0.8392 -4.8913 -3.0441 17 8 -1.6787 -5.5029 -3.8930 18 6 -1.6238 -6.8251 -3.7610 19 6 -0.7062 -7.1182 -2.7841 20 6 -0.4018 -8.4943 -2.3808 21 8 0.5395 -8.7699 -1.6664 22 6 -1.3530 -9.5521 -2.9223 23 6 -1.6499 -9.2235 -4.3893 24 6 -2.3916 -7.8889 -4.5046 25 6 0.8605 -3.0032 -1.3986 26 1 -0.4850 0.8400 0.0004 27 1 -0.3716 -1.7542 0.9562 28 1 2.1879 -4.2513 0.9645 29 1 3.1376 -3.5675 -0.4229 30 1 -0.7039 -3.8234 -2.9564 31 1 -2.2798 -9.5420 -2.3485 32 1 -0.8882 -10.5356 -2.8526 33 1 -2.2656 -10.0147 -4.8171 34 1 -0.7112 -9.1615 -4.9399 35 1 -3.3875 -7.9876 -4.0727 36 1 -2.4767 -7.6090 -5.5547 37 1 1.5094 -2.6304 -2.1911 38 1 -0.1982 -2.8792 -1.6264 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362375813.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:31:09 Heat of formation + Delta-G solvation = -63.426346 kcal Electronic energy + Delta-G solvation = -25044.832756 eV Core-core repulsion = 21241.722615 eV Total energy + Delta-G solvation = -3803.110141 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.114 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.78276 -39.48000 -39.00200 -37.17510 -35.97490 -34.04121 -32.68199 -32.22815 -30.05703 -29.04416 -27.97871 -25.55136 -25.19554 -23.38189 -22.71244 -22.33074 -19.88146 -18.82147 -18.41878 -17.55938 -16.85660 -16.68864 -16.17430 -15.40506 -15.25700 -15.07977 -14.79170 -14.57661 -14.34192 -14.25823 -14.17723 -13.95294 -13.14557 -13.01548 -12.83246 -12.47278 -12.23031 -11.98533 -11.90425 -11.60018 -11.47433 -11.32840 -11.11706 -10.97783 -10.50279 -10.29738 -9.71563 -9.70692 -9.50590 -9.20440 -8.81485 -8.57797 -8.42478 -7.83689 -6.44743 -4.55014 1.09671 1.51900 2.52334 2.87837 3.10933 3.20855 3.24657 3.46178 3.87642 4.00841 4.15275 4.34315 4.47378 4.55115 4.64361 4.78720 4.88917 5.06102 5.12504 5.24006 5.25957 5.43286 5.47444 5.57469 5.70473 5.79335 5.84705 5.97700 6.08975 6.22979 6.35860 6.41848 6.59774 6.68094 6.85999 7.06935 7.58982 7.75831 7.76509 8.47392 8.51447 8.84207 9.16818 9.45611 10.61937 Molecular weight = 305.11amu Principal moments of inertia in cm(-1) A = 0.027839 B = 0.003656 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.551152 B = 7657.109290 C = 8305.148150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.074 0.926 9 C 0.242 3.758 10 O -0.570 6.570 11 C 0.111 3.889 12 N -0.634 5.634 13 C 0.594 3.406 14 O -0.526 6.526 15 C -0.163 4.163 16 C 0.003 3.997 17 O -0.158 6.158 18 C 0.037 3.963 19 C -0.227 4.227 20 C 0.407 3.593 21 O -0.409 6.409 22 C -0.163 4.163 23 C -0.111 4.111 24 C -0.039 4.039 25 C 0.063 3.937 26 H 0.274 0.726 27 H 0.394 0.606 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.224 0.776 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.288 -10.849 -11.672 17.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.092 0.908 9 C 0.200 3.800 10 O -0.383 6.383 11 C -0.011 4.011 12 N -0.368 5.368 13 C 0.383 3.617 14 O -0.403 6.403 15 C -0.168 4.168 16 C -0.065 4.065 17 O -0.052 6.052 18 C -0.015 4.015 19 C -0.230 4.230 20 C 0.281 3.719 21 O -0.280 6.280 22 C -0.201 4.201 23 C -0.148 4.148 24 C -0.076 4.076 25 C -0.061 4.061 26 H 0.084 0.916 27 H 0.250 0.750 28 H 0.086 0.914 29 H 0.104 0.896 30 H 0.240 0.760 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.109 0.891 34 H 0.093 0.907 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.652 -12.042 -11.086 17.668 hybrid contribution 0.110 1.698 -0.189 1.712 sum -6.541 -10.344 -11.275 16.641 Atomic orbital electron populations 1.69265 1.06212 1.28163 1.50316 1.25081 0.95033 0.99966 0.92967 0.86249 0.80113 0.82116 0.77886 1.19380 1.20650 1.20600 1.21483 0.94035 0.89660 1.51867 0.90773 1.19565 0.85419 0.91100 0.83879 1.86070 1.45138 1.48353 1.58692 1.23313 0.93628 0.91882 0.92261 1.49568 1.42685 1.04173 1.40396 1.16623 0.81695 0.81460 0.81875 1.90854 1.56216 1.40083 1.53187 1.21087 1.02131 0.92064 1.01493 1.25216 0.91402 0.98907 0.90948 1.83444 1.52160 1.18675 1.50966 1.23097 0.97996 0.82212 0.98236 1.21693 1.02966 0.95610 1.02714 1.21833 0.84282 0.87444 0.78384 1.90692 1.26061 1.84107 1.27115 1.22415 1.01088 0.99574 0.97015 1.21542 1.01594 0.95744 0.95955 1.20299 0.98079 0.89018 1.00228 1.24425 0.99822 0.78494 1.03311 0.91595 0.74980 0.91371 0.89570 0.76048 0.88129 0.88560 0.89067 0.90698 0.88303 0.88658 0.89737 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.14 11.01 55.43 0.61 -21.53 16 2 C 0.07 1.74 5.39 -17.82 -0.10 1.65 16 3 Si 0.91 19.02 29.54 -169.99 -5.02 13.99 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.53 -13.07 8.70 -34.44 -0.30 -13.37 16 8 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.24 5.76 1.58 -91.12 -0.14 5.62 16 10 O -0.57 -14.68 13.55 -35.23 -0.48 -15.16 16 11 C 0.11 2.49 8.02 -8.50 -0.07 2.42 16 12 N -0.63 -13.99 3.69 -186.36 -0.69 -14.68 16 13 C 0.59 13.58 8.06 -12.59 -0.10 13.48 16 14 O -0.53 -13.77 15.47 -16.03 -0.25 -14.01 16 15 C -0.16 -3.11 6.31 -103.58 -0.65 -3.76 16 16 C 0.00 0.05 11.29 30.10 0.34 0.39 16 17 O -0.16 -2.16 10.46 9.47 0.10 -2.07 16 18 C 0.04 0.47 7.37 -34.64 -0.26 0.21 16 19 C -0.23 -3.73 6.23 -103.63 -0.65 -4.38 16 20 C 0.41 6.53 7.07 -30.19 -0.21 6.32 16 21 O -0.41 -8.56 15.67 -15.79 -0.25 -8.81 16 22 C -0.16 -1.54 6.18 -27.01 -0.17 -1.71 16 23 C -0.11 -0.73 5.81 -26.54 -0.15 -0.88 16 24 C -0.04 -0.28 6.24 -27.77 -0.17 -0.45 16 25 C 0.06 1.30 6.62 -8.36 -0.06 1.25 16 26 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 27 H 0.39 10.15 6.32 45.56 0.29 10.44 16 28 H 0.07 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.09 1.75 8.10 -51.93 -0.42 1.33 16 30 H 0.22 3.18 5.20 -52.49 -0.27 2.90 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 38 H 0.06 1.27 6.19 -51.93 -0.32 0.94 16 LS Contribution 322.62 15.07 4.86 4.86 Total: -1.00 -32.97 322.62 -7.45 -40.42 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -3.65 Total: 10.20 kcal Atomic # 6 Polarization: 9.46 SS G_CDS: -2.69 Total: 6.77 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: -0.08 Total: -36.20 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -0.87 Total: -40.05 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 13.99 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.97 -7.45 -40.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362375813.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.005 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds