Wall clock time and date at job start Fri Apr 10 2020 21:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47251 * 2 1 4 4 N 1.46499 * 109.47056 * 120.00289 * 2 1 3 5 5 C 1.46504 * 119.99941 * 299.99405 * 4 2 1 6 6 C 1.50699 * 109.47092 * 275.00201 * 5 4 2 7 7 H 1.07996 * 120.00262 * 0.02562 * 6 5 4 8 8 C 1.37871 * 119.99654 * 179.97438 * 6 5 4 9 9 N 1.31516 * 119.99747 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 120.00425 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47138 * 89.99481 * 10 8 6 12 12 H 1.48496 * 109.47465 * 209.99684 * 10 8 6 13 13 H 1.48503 * 109.46780 * 330.00148 * 10 8 6 14 14 S 1.65596 * 119.99973 * 119.99810 * 4 2 1 15 15 O 1.42097 * 104.27641 * 153.92766 * 14 4 2 16 16 O 1.42100 * 104.27779 * 26.07006 * 14 4 2 17 17 C 1.81402 * 104.45066 * 269.99609 * 14 4 2 18 18 C 1.52996 * 109.47131 * 173.67246 * 17 14 4 19 19 C 1.50694 * 115.55095 * 65.44976 * 18 17 14 20 20 O 1.20824 * 119.99962 * 245.77133 * 19 18 17 21 21 O 1.34233 * 120.00161 * 65.48846 * 19 18 17 22 22 C 1.53002 * 117.49775 * 211.11399 * 18 17 14 23 23 C 1.53003 * 117.50097 * 279.77495 * 18 17 14 24 24 H 1.09005 * 109.46656 * 300.00319 * 1 2 3 25 25 H 1.09003 * 109.47035 * 59.99892 * 1 2 3 26 26 H 1.08991 * 109.47445 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46670 * 239.99959 * 2 1 3 28 28 H 1.08998 * 109.46900 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.47189 * 300.00014 * 3 2 1 30 30 H 1.09000 * 109.46883 * 60.00087 * 3 2 1 31 31 H 1.09002 * 109.46941 * 35.00253 * 5 4 2 32 32 H 1.08994 * 109.46788 * 155.00155 * 5 4 2 33 33 H 0.97009 * 119.99865 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46718 * 53.67664 * 17 14 4 35 35 H 1.08994 * 109.47421 * 293.67787 * 17 14 4 36 36 H 0.96699 * 116.99781 * 180.27504 * 21 19 18 37 37 H 1.09000 * 117.50142 * 215.00171 * 22 18 17 38 38 H 1.09001 * 117.49952 * 0.03312 * 22 18 17 39 39 H 1.08996 * 117.49663 * 359.97438 * 23 18 17 40 40 H 1.09001 * 117.49648 * 144.97244 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 1.6645 -0.1901 2.5268 6 6 2.6340 0.8905 2.9311 7 1 3.4335 1.1761 2.2636 8 6 2.4997 1.5151 4.1529 9 7 3.3454 2.4585 4.5056 10 14 1.1165 1.0215 5.3072 11 1 1.5811 -0.0729 6.1971 12 1 0.7164 2.1917 6.1293 13 1 -0.0476 0.5531 4.5130 14 16 2.9704 -2.0371 1.0441 15 8 3.7315 -2.0653 2.2437 16 8 3.6005 -1.8799 -0.2198 17 6 1.7963 -3.4193 1.0027 18 6 2.5480 -4.7182 0.7052 19 6 3.5221 -5.1628 1.7656 20 8 4.7063 -5.1860 1.5266 21 8 3.0748 -5.5277 2.9775 22 6 1.7999 -5.8063 -0.0676 23 6 2.9108 -5.0066 -0.7529 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1301 1.4424 -0.0005 29 1 1.6768 1.9564 -0.8900 30 1 1.6768 1.9563 0.8900 31 1 0.6541 0.2180 2.5045 32 1 1.7105 -1.0074 3.2464 33 1 3.2511 2.8977 5.3654 34 1 1.0543 -3.2424 0.2239 35 1 1.2972 -3.5012 1.9682 36 1 3.7378 -5.8014 3.6260 37 1 2.0124 -6.8437 0.1908 38 1 0.7723 -5.5965 -0.3647 39 1 2.6135 -4.2711 -1.5004 40 1 3.8543 -5.5174 -0.9452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591574412.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:29:08 Heat of formation + Delta-G solvation = -128.371045 kcal Electronic energy + Delta-G solvation = -24869.140209 eV Core-core repulsion = 21198.657806 eV Total energy + Delta-G solvation = -3670.482404 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.67501 -37.61967 -37.08417 -36.56643 -36.14258 -35.33941 -32.67227 -30.89987 -29.57933 -27.48788 -26.65872 -25.02008 -22.87297 -22.43674 -20.62936 -20.09984 -18.37418 -17.93420 -17.32007 -17.19387 -16.78612 -16.03871 -15.63997 -15.52313 -14.74718 -14.37030 -14.21373 -13.95777 -13.64832 -13.06704 -13.03739 -12.75357 -12.64131 -12.11375 -11.99227 -11.92101 -11.77159 -11.64331 -11.57276 -11.47212 -11.31660 -11.11214 -10.99544 -10.92776 -10.86760 -10.67998 -10.48132 -10.20528 -10.15580 -9.92135 -9.39216 -8.55846 -8.12839 -6.04655 -4.02127 0.61710 1.91754 2.67436 3.12936 3.26490 3.28310 3.31470 3.35759 3.99926 4.20843 4.39699 4.39926 4.49553 4.58438 4.89903 5.10880 5.15793 5.24769 5.28745 5.28871 5.53112 5.57968 5.60878 5.61471 5.74573 5.82345 6.09814 6.18624 6.34208 6.35193 6.47093 6.68828 6.77816 7.04065 7.22816 7.40690 7.60410 7.72685 8.53049 9.02964 9.54133 11.08673 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.016319 B = 0.006037 C = 0.005175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.369116 B = 4636.977367 C = 5409.488911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.146 3.854 3 C -0.152 4.152 4 N -0.974 5.974 5 C 0.223 3.777 6 C -0.521 4.521 7 H 0.083 0.917 8 C 0.072 3.928 9 N -0.895 5.895 10 Si 0.866 3.134 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.265 1.265 14 S 2.598 3.402 15 O -0.928 6.928 16 O -0.957 6.957 17 C -0.608 4.608 18 C -0.137 4.137 19 C 0.506 3.494 20 O -0.493 6.493 21 O -0.503 6.503 22 C -0.136 4.136 23 C -0.139 4.139 24 H 0.068 0.932 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.085 0.915 28 H 0.057 0.943 29 H 0.046 0.954 30 H 0.084 0.916 31 H 0.037 0.963 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.416 0.584 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.448 -14.804 -9.441 19.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 C -0.211 4.211 4 N -0.813 5.813 5 C 0.100 3.900 6 C -0.560 4.560 7 H 0.101 0.899 8 C -0.130 4.130 9 N -0.534 5.534 10 Si 0.693 3.307 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 S 2.688 3.312 15 O -0.918 6.918 16 O -0.947 6.947 17 C -0.733 4.733 18 C -0.140 4.140 19 C 0.347 3.653 20 O -0.380 6.380 21 O -0.315 6.315 22 C -0.174 4.174 23 C -0.176 4.176 24 H 0.087 0.913 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.159 0.841 35 H 0.161 0.839 36 H 0.276 0.724 37 H 0.125 0.875 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.449 -14.587 -9.669 19.020 hybrid contribution -0.973 -0.561 1.453 1.837 sum -8.422 -15.148 -8.215 19.180 Atomic orbital electron populations 1.22221 0.96051 1.01341 1.02677 1.20738 0.93431 0.95312 0.86525 1.22108 1.01937 0.94864 1.02164 1.57412 1.70422 1.40388 1.13061 1.19470 0.97384 0.95570 0.77581 1.21378 1.13715 1.17766 1.03133 0.89937 1.24859 0.95885 0.94856 0.97421 1.69894 1.36514 1.25032 1.21916 0.87014 0.83121 0.78656 0.81895 1.19920 1.21021 1.18993 1.05489 0.75815 0.75108 0.74760 1.93652 1.65857 1.85492 1.46749 1.93527 1.72326 1.84934 1.43894 1.30574 1.17607 1.12981 1.12122 1.20297 1.02645 0.98508 0.92502 1.22042 0.87481 0.73833 0.81993 1.90770 1.17564 1.48978 1.80665 1.84464 1.45777 1.77901 1.23380 1.23200 0.98455 0.95718 1.00030 1.23427 1.00891 1.02848 0.90437 0.91338 0.91976 0.93293 0.89712 0.92341 0.93477 0.89673 0.94506 0.95527 0.92626 0.84089 0.83944 0.72434 0.87523 0.86740 0.85954 0.86571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.16 9.16 37.16 0.34 -1.82 16 2 C 0.15 2.43 3.19 -67.93 -0.22 2.21 16 3 C -0.15 -2.75 8.20 37.16 0.30 -2.45 16 4 N -0.97 -19.07 2.66 -108.57 -0.29 -19.36 16 5 C 0.22 5.05 3.65 -5.19 -0.02 5.03 16 6 C -0.52 -14.42 8.08 -34.44 -0.28 -14.70 16 7 H 0.08 2.52 7.32 -52.49 -0.38 2.14 16 8 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 9 N -0.89 -27.27 13.96 55.43 0.77 -26.49 16 10 Si 0.87 20.72 27.47 -169.99 -4.67 16.05 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 H -0.27 -5.80 6.54 56.52 0.37 -5.43 16 14 S 2.60 50.27 5.10 -107.50 -0.55 49.72 16 15 O -0.93 -22.30 16.67 -57.54 -0.96 -23.26 16 16 O -0.96 -19.49 16.57 -57.54 -0.95 -20.45 16 17 C -0.61 -8.09 6.03 37.16 0.22 -7.87 16 18 C -0.14 -1.78 2.00 -155.66 -0.31 -2.09 16 19 C 0.51 7.65 6.96 36.00 0.25 7.90 16 20 O -0.49 -8.83 17.46 -18.75 -0.33 -9.16 16 21 O -0.50 -6.26 13.42 -39.27 -0.53 -6.79 16 22 C -0.14 -1.18 9.93 -26.69 -0.26 -1.44 16 23 C -0.14 -1.50 9.78 -26.69 -0.26 -1.76 16 24 H 0.07 0.99 6.69 -51.93 -0.35 0.64 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.08 1.28 6.87 -51.93 -0.36 0.92 16 28 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 1.74 6.65 -51.93 -0.35 1.39 16 31 H 0.04 0.78 5.51 -51.93 -0.29 0.50 16 32 H 0.03 0.61 7.03 -51.93 -0.37 0.24 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.14 1.36 8.09 -51.92 -0.42 0.94 16 35 H 0.14 1.75 8.14 -51.93 -0.42 1.33 16 36 H 0.42 3.40 9.10 45.56 0.41 3.82 16 37 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.12 1.24 8.00 -51.93 -0.42 0.82 16 LS Contribution 345.02 15.07 5.20 5.20 Total: -1.00 -37.07 345.02 -7.67 -44.75 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -5.04 Total: 4.82 kcal Atomic # 6 Polarization: -14.69 SS G_CDS: -0.33 Total: -15.02 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.48 Total: -45.85 kcal Atomic # 8 Polarization: -56.89 SS G_CDS: -2.77 Total: -59.66 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.67 Total: 16.05 kcal Atomic # 16 Polarization: 50.27 SS G_CDS: -0.55 Total: 49.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -37.07 -7.67 -44.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591574412.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.625 kcal (2) G-P(sol) polarization free energy of solvation -37.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds