Wall clock time and date at job start Fri Apr 10 2020 21:29:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39289 * 119.48060 * 2 1 4 4 C 1.36275 * 120.81798 * 179.97438 * 3 2 1 5 5 C 1.40090 * 119.63581 * 0.04538 * 4 3 2 6 6 C 1.41579 * 119.72920 * 359.95126 * 5 4 3 7 7 C 1.36118 * 119.48309 * 180.02562 * 2 1 3 8 8 N 1.33698 * 119.99404 * 180.02562 * 6 5 4 9 9 C 1.31210 * 121.78539 * 0.02562 * 8 6 5 10 10 C 1.38898 * 121.89489 * 359.67950 * 9 8 6 11 11 C 1.38977 * 119.62144 * 0.61841 * 10 9 8 12 12 C 1.47974 * 121.09912 * 179.69367 * 11 10 9 13 13 C 1.39614 * 120.06699 * 309.72016 * 12 11 10 14 14 C 1.37754 * 119.93463 * 179.97438 * 13 12 11 15 15 C 1.39063 * 120.06448 * 0.02562 * 14 13 12 16 16 O 1.35652 * 119.92890 * 179.71807 * 15 14 13 17 17 C 1.34804 * 117.00469 * 354.44988 * 16 15 14 18 18 H 1.07999 * 120.00123 * 5.03971 * 17 16 15 19 19 C 1.38674 * 120.00025 * 185.04489 * 17 16 15 20 20 N 1.31537 * 120.00074 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99683 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47643 * 0.02562 * 21 19 17 23 23 H 1.48508 * 109.46868 * 120.00128 * 21 19 17 24 24 H 1.48500 * 109.46975 * 239.99662 * 21 19 17 25 25 C 1.39051 * 120.13442 * 0.02562 * 15 14 13 26 26 C 1.37761 * 120.06934 * 359.97438 * 25 15 14 27 27 H 1.08996 * 109.47050 * 269.98193 * 1 2 3 28 28 H 1.09003 * 109.46735 * 29.98249 * 1 2 3 29 29 H 1.08996 * 109.46818 * 149.97773 * 1 2 3 30 30 H 1.08005 * 119.59095 * 0.04215 * 3 2 1 31 31 H 1.07995 * 120.18106 * 179.97438 * 4 3 2 32 32 H 1.07995 * 120.12080 * 0.02562 * 7 2 1 33 33 H 1.08006 * 119.05055 * 179.97438 * 9 8 6 34 34 H 1.08003 * 120.19104 * 180.31885 * 10 9 8 35 35 H 1.08000 * 120.03014 * 359.95920 * 13 12 11 36 36 H 1.08006 * 119.96795 * 180.02562 * 14 13 12 37 37 H 0.96998 * 120.00189 * 179.97438 * 20 19 17 38 38 H 1.08005 * 119.96789 * 179.97438 * 25 15 14 39 39 H 1.07993 * 120.04056 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1925 1.2125 0.0000 4 6 3.5549 1.2443 0.0005 5 6 4.2759 0.0432 0.0001 6 6 3.5831 -1.1915 0.0002 7 6 2.1770 -1.1849 -0.0005 8 7 4.2658 -2.3410 0.0003 9 6 5.5777 -2.3657 0.0008 10 6 6.3336 -1.2004 -0.0053 11 6 5.6940 0.0334 0.0009 12 6 6.4670 1.2951 0.0014 13 6 7.4946 1.4855 0.9272 14 6 8.2129 2.6609 0.9250 15 6 7.9150 3.6576 0.0020 16 8 8.6203 4.8163 0.0060 17 6 9.5156 4.9846 0.9997 18 1 9.7039 4.1829 1.6984 19 6 10.1947 6.1872 1.1248 20 7 9.9657 7.1635 0.2736 21 14 11.4347 6.4205 2.5022 22 1 11.5086 5.1813 3.3170 23 1 12.7704 6.7112 1.9218 24 1 11.0114 7.5546 3.3624 25 6 6.8915 3.4714 -0.9206 26 6 6.1696 2.2981 -0.9233 27 1 -0.3633 -0.0003 1.0276 28 1 -0.3633 0.8902 -0.5136 29 1 -0.3633 -0.8898 -0.5142 30 1 1.6374 2.1390 0.0007 31 1 4.0759 2.1903 0.0001 32 1 1.6306 -2.1164 -0.0014 33 1 6.0843 -3.3195 0.0013 34 1 7.4124 -1.2528 -0.0098 35 1 7.7258 0.7120 1.6446 36 1 9.0081 2.8086 1.6407 37 1 10.4404 8.0048 0.3614 38 1 6.6622 4.2474 -1.6359 39 1 5.3746 2.1541 -1.6398 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243595310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:29:21 Heat of formation + Delta-G solvation = 42.815279 kcal Electronic energy + Delta-G solvation = -22918.968665 eV Core-core repulsion = 19563.607520 eV Total energy + Delta-G solvation = -3355.361145 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 305.116 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.80593 -39.09863 -37.43934 -36.74172 -33.67289 -32.42443 -31.92382 -30.50015 -30.18543 -28.33385 -27.21450 -25.58648 -23.94050 -22.88282 -22.02851 -21.88744 -20.44782 -18.21430 -17.78878 -17.32641 -16.70634 -16.46713 -14.86709 -14.77245 -14.58870 -14.42294 -14.27191 -14.16572 -13.88859 -13.77167 -13.51331 -13.39353 -12.92996 -12.87028 -12.57582 -12.34558 -11.85421 -11.63848 -11.45934 -11.37629 -11.27367 -11.15395 -11.02117 -10.77103 -10.53017 -10.11797 -9.49930 -9.36947 -8.98838 -8.60554 -8.39113 -8.15008 -7.23181 -6.61767 -4.18802 0.41254 0.90782 1.77904 2.06503 2.37784 2.97192 3.04040 3.05392 3.11014 3.83789 4.17000 4.31161 4.37518 4.65626 4.76383 4.88705 4.92714 4.98239 5.04159 5.10076 5.21679 5.27655 5.42451 5.46554 5.52770 5.58357 5.65249 5.69839 5.86514 6.02705 6.04434 6.09922 6.13508 6.22446 6.46037 6.48411 6.55443 6.62972 6.74120 6.88228 6.93913 7.06888 7.17214 7.25880 7.60315 7.83032 8.02866 8.83372 9.50388 10.55332 Molecular weight = 305.12amu Principal moments of inertia in cm(-1) A = 0.023082 B = 0.003049 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.801272 B = 9180.165820 C = 9907.254117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.067 4.067 3 C -0.130 4.130 4 C -0.079 4.079 5 C -0.107 4.107 6 C 0.137 3.863 7 C -0.108 4.108 8 N -0.498 5.498 9 C 0.138 3.862 10 C -0.195 4.195 11 C 0.065 3.935 12 C -0.175 4.175 13 C -0.042 4.042 14 C -0.236 4.236 15 C 0.163 3.837 16 O -0.167 6.167 17 C -0.393 4.393 18 H 0.096 0.904 19 C 0.041 3.959 20 N -0.855 5.855 21 Si 0.943 3.057 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 C -0.193 4.193 26 C -0.051 4.051 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.130 0.870 33 H 0.155 0.845 34 H 0.136 0.864 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.272 0.728 38 H 0.122 0.878 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.807 -12.996 0.265 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.069 4.069 3 C -0.148 4.148 4 C -0.098 4.098 5 C -0.109 4.109 6 C 0.016 3.984 7 C -0.127 4.127 8 N -0.207 5.207 9 C -0.032 4.032 10 C -0.215 4.215 11 C 0.057 3.943 12 C -0.176 4.176 13 C -0.060 4.060 14 C -0.255 4.255 15 C 0.108 3.892 16 O -0.069 6.069 17 C -0.469 4.469 18 H 0.113 0.887 19 C -0.164 4.164 20 N -0.488 5.488 21 Si 0.768 3.232 22 H -0.189 1.189 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.213 4.213 26 C -0.070 4.070 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.148 0.852 33 H 0.172 0.828 34 H 0.154 0.846 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -12.278 -13.275 0.072 18.083 hybrid contribution 1.287 0.866 0.717 1.709 sum -10.991 -12.410 0.789 16.596 Atomic orbital electron populations 1.20839 0.90947 1.02892 1.02472 1.19639 0.96281 0.92862 0.98139 1.20821 0.94304 0.97521 1.02141 1.21259 0.94097 0.97887 0.96536 1.18880 0.93464 0.94528 1.03981 1.18778 0.93984 0.87926 0.97723 1.20547 0.91501 0.98044 1.02582 1.67932 1.09305 1.28461 1.15025 1.22742 0.89466 0.98134 0.92829 1.22200 1.01513 0.92301 1.05518 1.19291 0.91126 0.93431 0.90499 1.18054 1.02058 0.94295 1.03206 1.20764 0.92887 0.96234 0.96143 1.21095 1.05088 0.95082 1.04244 1.19507 0.90013 0.86935 0.92783 1.83939 1.45654 1.31118 1.46190 1.21461 1.17346 1.00880 1.07223 0.88669 1.25356 0.98310 0.94258 0.98522 1.70033 1.39904 1.04245 1.34663 0.85609 0.79223 0.79025 0.79391 1.18937 1.19971 1.19960 1.20140 0.98835 0.99173 1.03103 1.20705 0.97658 0.91799 0.96818 0.90989 0.91327 0.91442 0.85695 0.84378 0.85200 0.82817 0.84634 0.87101 0.85093 0.91757 0.86038 0.86675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 9.98 36.01 0.36 -0.55 16 2 C -0.07 -0.76 5.84 -104.99 -0.61 -1.37 16 3 C -0.13 -1.55 9.60 -39.90 -0.38 -1.94 16 4 C -0.08 -1.11 8.65 -39.59 -0.34 -1.46 16 5 C -0.11 -1.63 5.74 -106.56 -0.61 -2.25 16 6 C 0.14 2.06 6.61 -84.89 -0.56 1.50 16 7 C -0.11 -1.38 9.58 -39.45 -0.38 -1.76 16 8 N -0.50 -7.37 10.32 -11.08 -0.11 -7.48 16 9 C 0.14 1.78 11.13 -17.57 -0.20 1.58 16 10 C -0.20 -2.66 9.62 -39.06 -0.38 -3.03 16 11 C 0.06 1.00 5.52 -104.27 -0.58 0.43 16 12 C -0.18 -2.97 5.10 -104.88 -0.54 -3.50 16 13 C -0.04 -0.74 9.55 -39.24 -0.37 -1.11 16 14 C -0.24 -4.83 9.15 -39.45 -0.36 -5.19 16 15 C 0.16 3.72 6.65 -38.97 -0.26 3.46 16 16 O -0.17 -4.54 9.75 0.43 0.00 -4.53 16 17 C -0.39 -10.46 9.48 30.89 0.29 -10.17 16 18 H 0.10 2.33 5.19 -52.49 -0.27 2.06 16 19 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -24.06 13.67 55.48 0.76 -23.30 16 21 Si 0.94 19.62 29.55 -169.99 -5.02 14.59 16 22 H -0.27 -5.28 7.11 56.52 0.40 -4.87 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 C -0.19 -3.84 9.98 -39.45 -0.39 -4.23 16 26 C -0.05 -0.88 7.68 -39.24 -0.30 -1.18 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.07 0.47 8.07 -51.93 -0.42 0.05 16 30 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 31 H 0.14 1.97 5.68 -52.49 -0.30 1.67 16 32 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.14 1.61 8.06 -52.48 -0.42 1.19 16 35 H 0.11 1.69 8.06 -52.49 -0.42 1.27 16 36 H 0.13 2.67 5.62 -52.48 -0.30 2.38 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.12 2.31 8.06 -52.48 -0.42 1.89 16 39 H 0.12 1.74 7.29 -52.49 -0.38 1.35 16 LS Contribution 334.68 15.07 5.04 5.04 Total: -1.00 -30.05 334.68 -9.22 -39.26 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -4.18 Total: 6.19 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -5.70 Total: -29.78 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.64 Total: -30.78 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: 0.00 Total: -4.53 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.05 -9.22 -39.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243595310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.079 kcal (2) G-P(sol) polarization free energy of solvation -30.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.264 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds