Wall clock time and date at job start Fri Apr 10 2020 21:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47260 * 2 1 4 4 O 1.42971 * 109.46993 * 120.00007 * 2 1 3 5 5 C 1.43093 * 113.76731 * 178.79681 * 4 2 1 6 6 C 1.53262 * 108.94189 * 302.02581 * 5 4 2 7 7 N 1.46500 * 109.57447 * 174.33633 * 6 5 4 8 8 C 1.34775 * 119.99854 * 155.00442 * 7 6 5 9 9 O 1.21586 * 120.00118 * 359.97438 * 8 7 6 10 10 C 1.47646 * 119.99967 * 180.02562 * 8 7 6 11 11 C 1.40006 * 119.89468 * 179.97438 * 10 8 7 12 12 C 1.36322 * 120.10589 * 180.23251 * 11 10 8 13 13 C 1.40890 * 119.89071 * 359.51190 * 12 11 10 14 14 C 1.41102 * 120.10418 * 180.23449 * 13 12 11 15 15 H 1.08000 * 119.99913 * 204.79089 * 14 13 12 16 16 C 1.40225 * 120.00169 * 24.78699 * 14 13 12 17 17 N 1.30645 * 119.99670 * 17.74323 * 16 14 13 18 18 Si 1.86801 * 120.00217 * 197.74152 * 16 14 13 19 19 H 1.48498 * 109.47059 * 89.99828 * 18 16 14 20 20 H 1.48498 * 109.47335 * 210.00155 * 18 16 14 21 21 H 1.48503 * 109.47224 * 329.99927 * 18 16 14 22 22 C 1.40893 * 119.78869 * 0.48631 * 13 12 11 23 23 C 1.36308 * 119.89538 * 359.74946 * 22 13 12 24 24 C 1.53263 * 108.84502 * 54.52638 * 6 5 4 25 25 O 1.42969 * 109.47302 * 239.99874 * 2 1 3 26 26 H 1.08997 * 109.46946 * 300.00273 * 1 2 3 27 27 H 1.08998 * 109.46883 * 59.99962 * 1 2 3 28 28 H 1.09002 * 109.47203 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47413 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46724 * 299.99818 * 3 2 1 31 31 H 1.08997 * 109.47364 * 59.99983 * 3 2 1 32 32 H 1.09004 * 109.55557 * 182.19154 * 5 4 2 33 33 H 1.09000 * 109.56356 * 61.86749 * 5 4 2 34 34 H 1.08997 * 109.57525 * 294.59349 * 6 5 4 35 35 H 0.96996 * 119.99921 * 334.99811 * 7 6 5 36 36 H 1.07997 * 119.94941 * 359.94993 * 11 10 8 37 37 H 1.08004 * 120.05393 * 179.74718 * 12 11 10 38 38 H 0.97006 * 119.99884 * 179.97438 * 17 16 14 39 39 H 1.08003 * 120.04706 * 179.72971 * 22 13 12 40 40 H 1.08001 * 119.94520 * 180.02562 * 23 22 13 41 41 H 1.09000 * 109.55891 * 65.31208 * 24 6 5 42 42 H 1.08995 * 109.55921 * 185.63621 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0065 -0.6740 1.1674 5 6 3.4332 -0.7515 1.2466 6 6 3.9624 -1.4692 0.0001 7 7 5.4270 -1.4373 0.0001 8 6 6.1216 -2.3823 -0.6641 9 8 5.5326 -3.2614 -1.2629 10 6 7.5977 -2.3506 -0.6636 11 6 8.3170 -3.3336 -1.3538 12 6 9.6800 -3.3112 -1.3523 13 6 10.3647 -2.2907 -0.6632 14 6 11.7754 -2.2603 -0.6628 15 1 12.3047 -1.7700 0.1408 16 6 12.4901 -2.8669 -1.7057 17 7 11.8897 -3.1492 -2.8311 18 14 14.3005 -3.2711 -1.4858 19 1 14.4377 -4.6405 -0.9281 20 1 14.9867 -3.2011 -2.8009 21 1 14.9165 -2.2930 -0.5535 22 6 9.6363 -1.3037 0.0299 23 6 8.2737 -1.3372 0.0267 24 6 3.4332 -0.7516 -1.2465 25 8 2.0066 -0.6740 -1.1673 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.7193 -1.3096 2.1381 33 1 3.8512 0.2541 1.2938 34 1 3.6196 -2.5038 0.0012 35 1 5.8969 -0.7362 0.4780 36 1 7.7913 -4.1136 -1.8845 37 1 10.2341 -4.0723 -1.8816 38 1 12.3842 -3.5684 -3.5528 39 1 10.1570 -0.5220 0.5632 40 1 7.7146 -0.5808 0.5574 41 1 3.8512 0.2540 -1.2937 42 1 3.7194 -1.3096 -2.1379 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000754650737.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:30:01 Heat of formation + Delta-G solvation = -134.754549 kcal Electronic energy + Delta-G solvation = -24686.565160 eV Core-core repulsion = 21016.195091 eV Total energy + Delta-G solvation = -3670.370070 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.75110 -40.57389 -38.92522 -36.83881 -36.31030 -35.70572 -33.41698 -32.06907 -31.49903 -30.33300 -28.43664 -27.50796 -27.20624 -24.23241 -23.37857 -22.64378 -21.46029 -21.02922 -19.37219 -18.89185 -18.44633 -17.78531 -17.13684 -17.05143 -16.56025 -16.22080 -15.80451 -15.74309 -15.35947 -15.08669 -14.57413 -14.51109 -14.37046 -14.07583 -13.92470 -13.64021 -13.58689 -13.24571 -13.20562 -13.06939 -12.85350 -12.71878 -12.64997 -12.40749 -12.27612 -12.09757 -11.77274 -11.53719 -11.35915 -11.14325 -10.80679 -10.62260 -10.10719 -9.57538 -9.43289 -8.80245 -6.49438 0.41519 1.15411 1.37566 1.42658 1.53053 2.04679 2.07791 2.15672 2.47884 2.73569 2.77102 3.46644 3.58862 3.70197 3.72616 3.86067 3.88285 4.19568 4.25525 4.32867 4.40394 4.49973 4.56826 4.67177 4.70384 4.72409 4.79754 4.81320 4.97125 5.01366 5.09010 5.19546 5.20557 5.24610 5.34634 5.57974 5.77705 5.80223 5.94543 6.00986 6.12103 6.19510 6.55487 6.63695 6.75888 6.88750 7.37141 8.14668 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.042266 B = 0.002594 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.309416 B =10789.569596 C =11023.740278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.245 3.755 3 C -0.202 4.202 4 O -0.392 6.392 5 C 0.056 3.944 6 C 0.086 3.914 7 N -0.709 5.709 8 C 0.575 3.425 9 O -0.604 6.604 10 C -0.294 4.294 11 C -0.049 4.049 12 C -0.205 4.205 13 C 0.101 3.899 14 C -0.469 4.469 15 H 0.094 0.906 16 C 0.033 3.967 17 N -0.803 5.803 18 Si 0.989 3.011 19 H -0.263 1.263 20 H -0.268 1.268 21 H -0.250 1.250 22 C -0.245 4.245 23 C -0.034 4.034 24 C 0.050 3.950 25 O -0.400 6.400 26 H 0.099 0.901 27 H 0.092 0.908 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.116 0.884 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.414 0.586 36 H 0.089 0.911 37 H 0.103 0.897 38 H 0.295 0.705 39 H 0.118 0.882 40 H 0.139 0.861 41 H 0.079 0.921 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.704 10.298 7.058 17.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.169 3.831 3 C -0.259 4.259 4 O -0.312 6.312 5 C -0.021 4.021 6 C -0.020 4.020 7 N -0.365 5.365 8 C 0.369 3.631 9 O -0.488 6.488 10 C -0.298 4.298 11 C -0.069 4.069 12 C -0.224 4.224 13 C 0.098 3.902 14 C -0.497 4.497 15 H 0.112 0.888 16 C -0.186 4.186 17 N -0.426 5.426 18 Si 0.809 3.191 19 H -0.187 1.187 20 H -0.192 1.192 21 H -0.173 1.173 22 C -0.264 4.264 23 C -0.053 4.053 24 C -0.027 4.027 25 O -0.320 6.320 26 H 0.117 0.883 27 H 0.111 0.889 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.134 0.866 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.252 0.748 36 H 0.107 0.893 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.156 0.844 41 H 0.097 0.903 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.401 9.487 6.408 17.626 hybrid contribution 1.412 -0.303 -0.378 1.493 sum -11.989 9.184 6.030 16.262 Atomic orbital electron populations 1.21686 0.88067 1.03861 1.04806 1.23346 0.95935 0.88856 0.74980 1.22823 1.02659 0.95132 1.05320 1.88163 1.20837 1.78875 1.43290 1.22939 0.80912 1.01367 0.96834 1.21983 0.81038 1.01428 0.97552 1.45439 1.05282 1.30890 1.54889 1.18470 0.87690 0.80076 0.76871 1.90650 1.72159 1.38862 1.47099 1.19093 0.90617 1.04965 1.15129 1.20540 0.94011 0.96508 0.95832 1.20944 0.92875 1.01269 1.07313 1.18163 0.94190 0.89244 0.88642 1.20177 0.91876 1.30534 1.07064 0.88842 1.27033 1.06333 0.91982 0.93267 1.69804 1.41240 1.28084 1.03506 0.85087 0.74972 0.79899 0.79190 1.18740 1.19237 1.17315 1.20957 0.94063 1.01498 1.09920 1.20703 0.94170 0.95359 0.95062 1.23000 0.80714 1.00694 0.98322 1.88160 1.20900 1.79010 1.43944 0.88253 0.88942 0.92038 0.91585 0.89558 0.88633 0.86585 0.89280 0.91196 0.74752 0.89299 0.87954 0.89374 0.86380 0.84367 0.90302 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 9.21 71.98 0.66 -1.32 16 2 C 0.24 5.00 1.50 30.59 0.05 5.04 16 3 C -0.20 -2.93 8.11 71.98 0.58 -2.34 16 4 O -0.39 -8.90 10.35 -126.22 -1.31 -10.21 16 5 C 0.06 1.14 6.08 72.07 0.44 1.58 16 6 C 0.09 2.38 2.87 45.17 0.13 2.51 16 7 N -0.71 -20.81 5.03 -444.75 -2.24 -23.05 16 8 C 0.57 23.48 7.74 86.73 0.67 24.15 16 9 O -0.60 -29.28 15.98 -3.99 -0.06 -29.34 16 10 C -0.29 -12.96 5.89 -19.93 -0.12 -13.07 16 11 C -0.05 -2.48 9.52 22.25 0.21 -2.27 16 12 C -0.20 -10.76 8.63 22.47 0.19 -10.56 16 13 C 0.10 5.11 5.57 -21.28 -0.12 4.99 16 14 C -0.47 -23.11 9.04 23.46 0.21 -22.90 16 15 H 0.09 4.28 7.91 -2.91 -0.02 4.26 16 16 C 0.03 1.52 5.14 85.35 0.44 1.96 16 17 N -0.80 -39.86 10.95 21.87 0.24 -39.62 16 18 Si 0.99 34.91 29.60 68.60 2.03 36.94 16 19 H -0.26 -9.15 7.11 99.48 0.71 -8.45 16 20 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 21 H -0.25 -8.38 7.11 99.48 0.71 -7.67 16 22 C -0.25 -10.70 9.73 22.47 0.22 -10.48 16 23 C -0.03 -1.33 9.47 22.25 0.21 -1.12 16 24 C 0.05 1.38 6.19 72.07 0.45 1.82 16 25 O -0.40 -10.79 10.35 -126.22 -1.31 -12.10 16 26 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.07 0.96 5.11 -2.39 -0.01 0.94 16 30 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.03 16 32 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 33 H 0.09 1.32 6.53 -2.39 -0.02 1.31 16 34 H 0.07 2.42 7.57 -2.39 -0.02 2.40 16 35 H 0.41 9.36 6.61 -92.71 -0.61 8.75 16 36 H 0.09 4.53 7.63 -2.91 -0.02 4.51 16 37 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 38 H 0.30 13.17 8.29 -92.70 -0.77 12.40 16 39 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.14 3.87 6.37 -2.91 -0.02 3.85 16 41 H 0.08 1.79 6.53 -2.39 -0.02 1.77 16 42 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -65.46 342.05 2.02 -63.44 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: 0.44 Total: 35.96 kcal Atomic # 6 Polarization: -26.24 SS G_CDS: 4.23 Total: -22.02 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -2.00 Total: -62.67 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -2.68 Total: -51.65 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -65.46 2.02 -63.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000754650737.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.317 kcal (2) G-P(sol) polarization free energy of solvation -65.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds