Wall clock time and date at job start Fri Apr 10 2020 21:33:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20822 * 120.00019 * 2 1 4 4 O 1.34228 * 119.99830 * 180.02562 * 2 1 3 5 5 C 1.45200 * 117.00264 * 179.97438 * 4 2 1 6 6 C 1.50695 * 109.47364 * 180.02562 * 5 4 2 7 7 O 1.21291 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00029 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99857 * 4.73166 * 8 6 5 10 10 C 1.50699 * 109.46849 * 270.00260 * 9 8 6 11 11 H 1.07990 * 120.00452 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99593 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47307 * 59.99129 * 14 12 10 16 16 H 1.48497 * 109.47288 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47101 * 299.99518 * 14 12 10 18 18 C 1.39920 * 119.99787 * 184.73645 * 8 6 5 19 19 C 1.38903 * 120.06875 * 247.88824 * 18 8 6 20 20 C 1.38085 * 119.92805 * 180.27391 * 19 18 8 21 21 C 1.38308 * 120.07050 * 359.52305 * 20 19 18 22 22 C 1.50703 * 119.92525 * 180.20869 * 21 20 19 23 23 C 1.38260 * 120.14261 * 0.45487 * 21 20 19 24 24 C 1.50696 * 119.96154 * 179.77164 * 23 21 20 25 25 C 1.38136 * 120.06952 * 359.79732 * 23 21 20 26 26 H 1.09001 * 109.47272 * 269.99929 * 1 2 3 27 27 H 1.09000 * 109.46948 * 29.99315 * 1 2 3 28 28 H 1.09002 * 109.47660 * 149.99566 * 1 2 3 29 29 H 1.09002 * 109.47177 * 59.99534 * 5 4 2 30 30 H 1.09006 * 109.46474 * 299.99960 * 5 4 2 31 31 H 1.09000 * 109.46800 * 30.00398 * 9 8 6 32 32 H 1.08997 * 109.46643 * 150.00479 * 9 8 6 33 33 H 0.96990 * 120.00260 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.03199 * 0.02562 * 19 18 8 35 35 H 1.08006 * 119.96372 * 179.72270 * 20 19 18 36 36 H 1.09000 * 109.47424 * 270.24432 * 22 21 20 37 37 H 1.08997 * 109.47580 * 30.24987 * 22 21 20 38 38 H 1.09001 * 109.46636 * 150.25060 * 22 21 20 39 39 H 1.09005 * 109.47179 * 270.01895 * 24 23 21 40 40 H 1.08992 * 109.47460 * 30.02781 * 24 23 21 41 41 H 1.09005 * 109.46839 * 150.02722 * 24 23 21 42 42 H 1.07994 * 120.03736 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 -0.0011 6 6 4.2041 -2.4791 -0.0022 7 8 3.4652 -3.4410 -0.0021 8 7 5.5402 -2.6558 -0.0024 9 6 6.4321 -1.4983 0.1033 10 6 6.7532 -0.9841 -1.2764 11 1 6.3352 -1.4709 -2.1450 12 6 7.5816 0.1074 -1.4297 13 7 8.0911 0.7000 -0.3720 14 14 7.9791 0.7453 -3.1398 15 1 6.7233 1.1493 -3.8218 16 1 8.8832 1.9185 -3.0328 17 1 8.6464 -0.3244 -3.9245 18 6 6.0755 -3.9446 -0.1035 19 6 6.7477 -4.5056 0.9748 20 6 7.2797 -5.7755 0.8699 21 6 7.1352 -6.4926 -0.3039 22 6 7.7131 -7.8802 -0.4132 23 6 6.4663 -5.9373 -1.3789 24 6 6.3157 -6.7202 -2.6577 25 6 5.9363 -4.6653 -1.2822 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 3.9645 -0.5546 0.8889 30 1 3.9637 -0.5542 -0.8911 31 1 5.9417 -0.7132 0.6787 32 1 7.3537 -1.7945 0.6043 33 1 8.6736 1.4680 -0.4798 34 1 6.8576 -3.9476 1.8929 35 1 7.8064 -6.2106 1.7065 36 1 8.7358 -7.8196 -0.7852 37 1 7.7110 -8.3531 0.5688 38 1 7.1102 -8.4715 -1.1025 39 1 7.1631 -6.5144 -3.3117 40 1 6.2829 -7.7855 -2.4298 41 1 5.3921 -6.4268 -3.1567 42 1 5.4142 -4.2318 -2.1223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000800983999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:15 Heat of formation + Delta-G solvation = -100.719833 kcal Electronic energy + Delta-G solvation = -25034.326924 eV Core-core repulsion = 21365.432711 eV Total energy + Delta-G solvation = -3668.894214 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38685 -39.79721 -38.37247 -36.17902 -35.32975 -33.06148 -32.18567 -31.56257 -30.52201 -28.24733 -27.59005 -26.86133 -25.40076 -23.12888 -21.91759 -21.34607 -20.57941 -18.71921 -17.50165 -16.89576 -16.49781 -16.40199 -16.23487 -15.50239 -15.36342 -14.97642 -14.50042 -14.26388 -14.02973 -13.77318 -13.10808 -12.98750 -12.83354 -12.78828 -12.63945 -12.47796 -12.36414 -12.12113 -12.00231 -11.79402 -11.69003 -11.35416 -11.19049 -10.96941 -10.83245 -10.70016 -10.41397 -10.37899 -10.25058 -9.91896 -9.30643 -8.62938 -8.52573 -8.31707 -7.66605 -6.25321 -4.33922 1.66443 1.79446 2.37090 2.67182 3.08296 3.22471 3.27307 3.30168 3.82195 4.08815 4.29338 4.88198 5.05492 5.07310 5.10269 5.13614 5.22876 5.25158 5.29961 5.35473 5.54110 5.60165 5.63823 5.65496 5.74975 5.82061 5.83045 5.96742 6.01053 6.04267 6.20197 6.44568 6.59733 6.64729 6.77150 6.91148 6.94977 7.05995 7.20692 7.55362 7.68557 7.91231 7.92245 8.02981 8.64841 8.79291 9.34390 10.81780 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.005526 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.647873 B = 5065.318036 C = 7087.684457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.454 3.546 3 O -0.511 6.511 4 O -0.340 6.340 5 C 0.056 3.944 6 C 0.524 3.476 7 O -0.539 6.539 8 N -0.556 5.556 9 C 0.235 3.765 10 C -0.545 4.545 11 H 0.062 0.938 12 C 0.069 3.931 13 N -0.888 5.888 14 Si 0.898 3.102 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.275 1.275 18 C 0.174 3.826 19 C -0.123 4.123 20 C -0.109 4.109 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.081 4.081 24 C -0.113 4.113 25 C -0.101 4.101 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.093 0.907 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.577 -9.663 0.714 11.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.297 3.703 3 O -0.399 6.399 4 O -0.255 6.255 5 C -0.020 4.020 6 C 0.312 3.688 7 O -0.416 6.416 8 N -0.285 5.285 9 C 0.117 3.883 10 C -0.584 4.584 11 H 0.081 0.919 12 C -0.135 4.135 13 N -0.525 5.525 14 Si 0.725 3.275 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.200 1.200 18 C 0.083 3.917 19 C -0.143 4.143 20 C -0.128 4.128 21 C -0.103 4.103 22 C -0.167 4.167 23 C -0.082 4.082 24 C -0.169 4.169 25 C -0.120 4.120 26 H 0.121 0.879 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.119 0.881 30 H 0.134 0.866 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.635 -9.663 0.786 11.748 hybrid contribution 0.621 0.888 -0.861 1.384 sum -6.014 -8.775 -0.075 10.639 Atomic orbital electron populations 1.21571 0.87177 1.05664 1.05589 1.23854 0.92131 0.81644 0.72641 1.90733 1.70797 1.33078 1.45269 1.86478 1.21184 1.34404 1.83464 1.22798 0.76552 0.96302 1.06354 1.19928 0.82213 0.89995 0.76662 1.90675 1.58945 1.42164 1.49837 1.45793 1.05435 1.06670 1.70603 1.19664 0.89290 0.81102 0.98227 1.21365 1.30686 1.14128 0.92202 0.91938 1.24920 0.95135 0.96064 0.97363 1.69893 1.31941 1.21655 1.29019 0.86538 0.78563 0.78423 0.83940 1.19939 1.20963 1.20006 1.17455 0.96132 0.85090 0.92997 1.21154 0.99781 0.95426 0.97917 1.20741 1.00445 0.94238 0.97355 1.19635 1.00132 0.96653 0.93875 1.20785 1.00561 0.93188 1.02182 1.19519 0.98621 0.94382 0.95675 1.20813 1.02191 0.99334 0.94588 1.21064 1.00030 0.94123 0.96824 0.87935 0.88095 0.88783 0.88100 0.86569 0.94025 0.93783 0.92237 0.86001 0.86166 0.91535 0.92013 0.91506 0.91318 0.91415 0.91795 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 10.41 36.01 0.37 -1.00 16 2 C 0.45 7.16 8.07 36.01 0.29 7.45 16 3 O -0.51 -9.81 16.85 -18.75 -0.32 -10.12 16 4 O -0.34 -6.16 9.75 -45.90 -0.45 -6.60 16 5 C 0.06 1.11 4.61 36.00 0.17 1.28 16 6 C 0.52 11.29 7.61 -10.99 -0.08 11.21 16 7 O -0.54 -12.55 16.26 -14.11 -0.23 -12.78 16 8 N -0.56 -12.07 2.51 -114.74 -0.29 -12.36 16 9 C 0.24 5.59 4.88 -5.19 -0.03 5.57 16 10 C -0.55 -14.16 9.16 -34.44 -0.32 -14.48 16 11 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 12 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 13 N -0.89 -24.48 13.29 55.43 0.74 -23.74 16 14 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 C 0.17 3.57 4.75 -83.69 -0.40 3.17 16 19 C -0.12 -2.24 9.69 -39.39 -0.38 -2.62 16 20 C -0.11 -1.69 9.69 -39.61 -0.38 -2.07 16 21 C -0.10 -1.53 5.88 -104.59 -0.62 -2.15 16 22 C -0.11 -1.21 9.60 36.01 0.35 -0.86 16 23 C -0.08 -1.32 5.88 -104.65 -0.62 -1.93 16 24 C -0.11 -1.42 9.60 36.00 0.35 -1.08 16 25 C -0.10 -1.95 9.20 -39.39 -0.36 -2.31 16 26 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.10 1.93 7.25 -51.93 -0.38 1.55 16 30 H 0.12 2.41 7.91 -51.93 -0.41 2.00 16 31 H 0.04 1.00 6.47 -51.93 -0.34 0.67 16 32 H 0.04 1.10 7.86 -51.93 -0.41 0.69 16 33 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 34 H 0.12 2.09 8.06 -52.49 -0.42 1.66 16 35 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 38 H 0.07 0.65 5.94 -51.93 -0.31 0.34 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.71 5.94 -51.93 -0.31 0.40 16 41 H 0.06 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 LS Contribution 362.54 15.07 5.46 5.46 Total: -1.00 -32.04 362.54 -7.77 -39.81 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.91 Total: 2.68 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -1.75 Total: 1.92 kcal Atomic # 7 Polarization: -36.55 SS G_CDS: 0.45 Total: -36.10 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -0.99 Total: -29.50 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.04 -7.77 -39.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800983999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.910 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds