Wall clock time and date at job start Fri Apr 10 2020 21:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20822 * 120.00019 * 2 1 4 4 O 1.34228 * 119.99830 * 180.02562 * 2 1 3 5 5 C 1.45200 * 117.00264 * 179.97438 * 4 2 1 6 6 C 1.50695 * 109.47364 * 180.02562 * 5 4 2 7 7 O 1.21291 * 120.00033 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00029 * 180.02562 * 6 5 4 9 9 C 1.46502 * 119.99857 * 4.73166 * 8 6 5 10 10 C 1.50699 * 109.46849 * 270.00260 * 9 8 6 11 11 H 1.07990 * 120.00452 * 359.97438 * 10 9 8 12 12 C 1.37883 * 119.99593 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00219 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99959 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47307 * 59.99129 * 14 12 10 16 16 H 1.48497 * 109.47288 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47101 * 299.99518 * 14 12 10 18 18 C 1.39920 * 119.99787 * 184.73645 * 8 6 5 19 19 C 1.38903 * 120.06875 * 247.88824 * 18 8 6 20 20 C 1.38085 * 119.92805 * 180.27391 * 19 18 8 21 21 C 1.38308 * 120.07050 * 359.52305 * 20 19 18 22 22 C 1.50703 * 119.92525 * 180.20869 * 21 20 19 23 23 C 1.38260 * 120.14261 * 0.45487 * 21 20 19 24 24 C 1.50696 * 119.96154 * 179.77164 * 23 21 20 25 25 C 1.38136 * 120.06952 * 359.79732 * 23 21 20 26 26 H 1.09001 * 109.47272 * 269.99929 * 1 2 3 27 27 H 1.09000 * 109.46948 * 29.99315 * 1 2 3 28 28 H 1.09002 * 109.47660 * 149.99566 * 1 2 3 29 29 H 1.09002 * 109.47177 * 59.99534 * 5 4 2 30 30 H 1.09006 * 109.46474 * 299.99960 * 5 4 2 31 31 H 1.09000 * 109.46800 * 30.00398 * 9 8 6 32 32 H 1.08997 * 109.46643 * 150.00479 * 9 8 6 33 33 H 0.96990 * 120.00260 * 180.02562 * 13 12 10 34 34 H 1.08000 * 120.03199 * 0.02562 * 19 18 8 35 35 H 1.08006 * 119.96372 * 179.72270 * 20 19 18 36 36 H 1.09000 * 109.47424 * 270.24432 * 22 21 20 37 37 H 1.08997 * 109.47580 * 30.24987 * 22 21 20 38 38 H 1.09001 * 109.46636 * 150.25060 * 22 21 20 39 39 H 1.09005 * 109.47179 * 270.01895 * 24 23 21 40 40 H 1.08992 * 109.47460 * 30.02781 * 24 23 21 41 41 H 1.09005 * 109.46839 * 150.02722 * 24 23 21 42 42 H 1.07994 * 120.03736 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1111 1.0463 0.0000 4 8 2.1781 -1.1625 -0.0005 5 6 3.6281 -1.0866 -0.0011 6 6 4.2041 -2.4791 -0.0022 7 8 3.4652 -3.4410 -0.0021 8 7 5.5402 -2.6558 -0.0024 9 6 6.4321 -1.4983 0.1033 10 6 6.7532 -0.9841 -1.2764 11 1 6.3352 -1.4709 -2.1450 12 6 7.5816 0.1074 -1.4297 13 7 8.0911 0.7000 -0.3720 14 14 7.9791 0.7453 -3.1398 15 1 6.7233 1.1493 -3.8218 16 1 8.8832 1.9185 -3.0328 17 1 8.6464 -0.3244 -3.9245 18 6 6.0755 -3.9446 -0.1035 19 6 6.7477 -4.5056 0.9748 20 6 7.2797 -5.7755 0.8699 21 6 7.1352 -6.4926 -0.3039 22 6 7.7131 -7.8802 -0.4132 23 6 6.4663 -5.9373 -1.3789 24 6 6.3157 -6.7202 -2.6577 25 6 5.9363 -4.6653 -1.2822 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5137 28 1 -0.3634 -0.8899 -0.5139 29 1 3.9645 -0.5546 0.8889 30 1 3.9637 -0.5542 -0.8911 31 1 5.9417 -0.7132 0.6787 32 1 7.3537 -1.7945 0.6043 33 1 8.6736 1.4680 -0.4798 34 1 6.8576 -3.9476 1.8929 35 1 7.8064 -6.2106 1.7065 36 1 8.7358 -7.8196 -0.7852 37 1 7.7110 -8.3531 0.5688 38 1 7.1102 -8.4715 -1.1025 39 1 7.1631 -6.5144 -3.3117 40 1 6.2829 -7.7855 -2.4298 41 1 5.3921 -6.4268 -3.1567 42 1 5.4142 -4.2318 -2.1223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000800983999.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:14 Heat of formation + Delta-G solvation = -117.311642 kcal Electronic energy + Delta-G solvation = -25035.046399 eV Core-core repulsion = 21365.432711 eV Total energy + Delta-G solvation = -3669.613689 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89288 -41.22740 -39.81959 -37.63525 -37.04006 -34.89672 -33.59940 -32.88319 -31.58712 -29.58237 -29.42746 -28.15122 -26.65598 -25.07229 -23.24744 -22.66100 -21.96334 -20.26641 -18.91139 -18.81625 -18.07851 -17.93391 -17.82312 -16.94916 -16.81977 -16.42046 -16.15725 -15.79818 -15.13834 -15.05877 -14.59027 -14.44029 -14.22053 -14.08069 -13.88905 -13.58936 -13.54898 -13.48976 -13.38540 -13.13276 -13.04930 -12.76442 -12.74091 -12.59304 -12.30216 -12.11214 -11.97264 -11.95614 -11.75826 -11.72530 -11.05504 -10.67601 -10.11674 -9.66403 -9.15428 -8.29834 -6.45450 0.30607 0.45329 1.10095 1.26211 1.35822 1.37581 1.39455 1.46518 2.25753 2.38096 2.75042 3.01191 3.41792 3.68529 3.89259 3.94586 3.97572 4.08038 4.12941 4.28569 4.39603 4.46518 4.49466 4.56793 4.72763 4.75251 4.82383 4.86539 4.89066 4.97950 5.00568 5.04413 5.20542 5.25642 5.37355 5.44529 5.50718 5.61749 5.69410 5.75804 5.90789 6.12170 6.25923 6.60274 6.64127 7.02833 7.26623 8.76178 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.009295 B = 0.005526 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3011.647873 B = 5065.318036 C = 7087.684457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.449 3.551 3 O -0.551 6.551 4 O -0.347 6.347 5 C 0.065 3.935 6 C 0.522 3.478 7 O -0.559 6.559 8 N -0.553 5.553 9 C 0.252 3.748 10 C -0.553 4.553 11 H 0.053 0.947 12 C 0.025 3.975 13 N -0.916 5.916 14 Si 0.956 3.044 15 H -0.272 1.272 16 H -0.277 1.277 17 H -0.270 1.270 18 C 0.130 3.870 19 C -0.141 4.141 20 C -0.106 4.106 21 C -0.098 4.098 22 C -0.108 4.108 23 C -0.086 4.086 24 C -0.111 4.111 25 C -0.126 4.126 26 H 0.130 0.870 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.034 0.966 32 H 0.028 0.972 33 H 0.271 0.729 34 H 0.122 0.878 35 H 0.155 0.845 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.060 0.940 42 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.663 -11.616 0.166 13.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.295 3.705 3 O -0.441 6.441 4 O -0.263 6.263 5 C -0.012 4.012 6 C 0.311 3.689 7 O -0.438 6.438 8 N -0.281 5.281 9 C 0.132 3.868 10 C -0.592 4.592 11 H 0.072 0.928 12 C -0.176 4.176 13 N -0.554 5.554 14 Si 0.781 3.219 15 H -0.197 1.197 16 H -0.202 1.202 17 H -0.195 1.195 18 C 0.040 3.960 19 C -0.160 4.160 20 C -0.124 4.124 21 C -0.098 4.098 22 C -0.164 4.164 23 C -0.087 4.087 24 C -0.167 4.167 25 C -0.146 4.146 26 H 0.148 0.852 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.140 0.860 35 H 0.173 0.827 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.101 0.899 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.079 0.921 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.729 -11.637 0.235 13.445 hybrid contribution 0.633 1.407 -0.659 1.678 sum -6.096 -10.230 -0.424 11.916 Atomic orbital electron populations 1.21786 0.81782 1.07460 1.07818 1.25234 0.94204 0.80270 0.70767 1.90715 1.71994 1.34148 1.47269 1.86527 1.19875 1.36098 1.83783 1.22525 0.78156 0.94981 1.05567 1.20172 0.82125 0.90399 0.76199 1.90635 1.59206 1.42912 1.51060 1.45687 1.05228 1.06984 1.70240 1.19296 0.88836 0.81608 0.97031 1.21540 1.30637 1.14248 0.92745 0.92831 1.25647 0.94985 0.96218 1.00757 1.69980 1.32550 1.22124 1.30764 0.85631 0.78418 0.78062 0.79824 1.19703 1.20168 1.19474 1.17851 0.98495 0.84965 0.94657 1.21324 1.00337 0.96916 0.97424 1.21177 0.99407 0.92990 0.98815 1.20186 0.98430 0.98411 0.92751 1.20882 1.01176 0.90421 1.03965 1.19967 0.97626 0.93353 0.97729 1.20888 1.02503 1.00384 0.92909 1.21120 1.01518 0.95859 0.96076 0.85204 0.86188 0.87003 0.88019 0.88093 0.94821 0.95356 0.92030 0.86022 0.82739 0.90095 0.90132 0.89892 0.90233 0.88584 0.92106 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 10.41 71.24 0.74 -1.51 16 2 C 0.45 14.17 8.07 71.24 0.57 14.75 16 3 O -0.55 -21.63 16.85 21.98 0.37 -21.26 16 4 O -0.35 -12.89 9.75 -45.05 -0.44 -13.33 16 5 C 0.06 2.70 4.61 71.23 0.33 3.03 16 6 C 0.52 23.72 7.61 87.66 0.67 24.38 16 7 O -0.56 -27.08 16.26 15.73 0.26 -26.83 16 8 N -0.55 -25.40 2.51 -635.30 -1.59 -26.99 16 9 C 0.25 12.61 4.88 85.63 0.42 13.03 16 10 C -0.55 -29.84 9.16 25.60 0.23 -29.61 16 11 H 0.05 2.93 7.81 -2.92 -0.02 2.90 16 12 C 0.03 1.36 5.46 84.66 0.46 1.82 16 13 N -0.92 -51.59 13.29 21.45 0.28 -51.30 16 14 Si 0.96 43.00 29.54 68.60 2.03 45.03 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 18 C 0.13 5.57 4.75 38.16 0.18 5.76 16 19 C -0.14 -5.20 9.69 22.39 0.22 -4.98 16 20 C -0.11 -3.10 9.69 22.25 0.22 -2.88 16 21 C -0.10 -2.67 5.88 -19.84 -0.12 -2.79 16 22 C -0.11 -1.90 9.60 71.24 0.68 -1.21 16 23 C -0.09 -2.71 5.88 -19.88 -0.12 -2.82 16 24 C -0.11 -2.55 9.60 71.23 0.68 -1.87 16 25 C -0.13 -5.03 9.20 22.39 0.21 -4.83 16 26 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 27 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 4.15 7.25 -2.39 -0.02 4.14 16 30 H 0.10 4.49 7.91 -2.38 -0.02 4.47 16 31 H 0.03 1.73 6.47 -2.39 -0.02 1.71 16 32 H 0.03 1.50 7.86 -2.39 -0.02 1.48 16 33 H 0.27 14.43 8.31 -92.72 -0.77 13.66 16 34 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.25 16 37 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 38 H 0.08 1.21 5.94 -2.39 -0.01 1.20 16 39 H 0.08 1.69 8.14 -2.38 -0.02 1.67 16 40 H 0.10 1.66 5.94 -2.39 -0.01 1.64 16 41 H 0.06 1.44 8.08 -2.38 -0.02 1.42 16 42 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -72.25 362.54 7.31 -64.94 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: 1.02 Total: 19.47 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 5.38 Total: 10.26 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.31 Total: -78.29 kcal Atomic # 8 Polarization: -61.60 SS G_CDS: 0.19 Total: -61.42 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.25 7.31 -64.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000800983999.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.371 kcal (2) G-P(sol) polarization free energy of solvation -72.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds