Wall clock time and date at job start Fri Apr 10 2020 21:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.50348 * 2 1 4 4 C 1.53042 * 109.49847 * 120.06141 * 2 1 3 5 5 C 1.53043 * 109.54143 * 181.34686 * 4 2 1 6 6 H 1.09005 * 109.49490 * 58.58498 * 5 4 2 7 7 O 1.42895 * 109.50223 * 178.68395 * 5 4 2 8 8 C 1.53190 * 109.31332 * 298.63885 * 5 4 2 9 9 N 1.46928 * 108.77877 * 54.62986 * 8 5 4 10 10 C 1.34773 * 120.63058 * 126.41349 * 9 8 5 11 11 O 1.21595 * 120.00008 * 176.40652 * 10 9 8 12 12 C 1.47535 * 120.00319 * 356.40911 * 10 9 8 13 13 C 1.39673 * 120.19250 * 34.53676 * 12 10 9 14 14 C 1.37826 * 119.91670 * 180.02562 * 13 12 10 15 15 C 1.38573 * 120.32427 * 359.97438 * 14 13 12 16 16 C 1.38026 * 120.40409 * 0.02712 * 15 14 13 17 17 C 1.38839 * 120.06842 * 359.67515 * 16 15 14 18 18 O 1.35524 * 120.16188 * 180.30311 * 17 16 15 19 19 C 1.34813 * 117.00122 * 5.58763 * 18 17 16 20 20 H 1.07999 * 119.99816 * 354.96086 * 19 18 17 21 21 C 1.38694 * 119.99948 * 174.95181 * 19 18 17 22 22 N 1.31522 * 119.99905 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00030 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47597 * 89.99475 * 23 21 19 25 25 H 1.48505 * 109.47079 * 209.99386 * 23 21 19 26 26 H 1.48506 * 109.47213 * 329.99487 * 23 21 19 27 27 C 1.46922 * 118.73698 * 306.39507 * 9 8 5 28 28 H 1.09003 * 109.47093 * 299.93891 * 1 2 3 29 29 H 1.08997 * 109.47200 * 59.93493 * 1 2 3 30 30 H 1.08995 * 109.47153 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.45940 * 301.36538 * 4 2 1 32 32 H 1.09001 * 109.45849 * 61.32540 * 4 2 1 33 33 H 0.96692 * 114.00516 * 180.02562 * 7 5 4 34 34 H 1.09004 * 109.58178 * 294.84648 * 8 5 4 35 35 H 1.08998 * 109.59024 * 174.42133 * 8 5 4 36 36 H 1.07995 * 120.04308 * 0.02562 * 13 12 10 37 37 H 1.07995 * 119.83868 * 179.97438 * 14 13 12 38 38 H 1.08005 * 119.80139 * 180.02562 * 15 14 13 39 39 H 1.07997 * 119.97073 * 179.97438 * 16 15 14 40 40 H 0.97001 * 120.00109 * 180.02562 * 22 21 19 41 41 H 1.08999 * 109.58823 * 293.81974 * 27 9 8 42 42 H 1.09006 * 109.58778 * 173.39163 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 3.5709 -0.6940 1.2667 6 1 3.9155 0.3401 1.2547 7 8 4.0462 -1.3421 2.4482 8 6 4.1059 -1.4255 0.0317 9 7 3.5053 -0.8284 -1.1689 10 6 4.2819 -0.3855 -2.1775 11 8 3.7716 0.0465 -3.1931 12 6 5.7511 -0.4249 -2.0493 13 6 6.3676 -1.4649 -1.3499 14 6 7.7406 -1.4958 -1.2333 15 6 8.5141 -0.4996 -1.8073 16 6 7.9188 0.5343 -2.5014 17 6 6.5375 0.5785 -2.6344 18 8 5.9515 1.5895 -3.3207 19 6 6.7695 2.4579 -3.9485 20 1 7.8394 2.3783 -3.8242 21 6 6.2372 3.4533 -4.7543 22 7 7.0352 4.3002 -5.3673 23 14 4.3867 3.5912 -4.9691 24 1 3.8322 4.4868 -3.9223 25 1 4.0844 4.1515 -6.3107 26 1 3.7723 2.2449 -4.8449 27 6 2.0420 -0.7238 -1.2493 28 1 -0.3633 0.5129 0.8906 29 1 -0.3633 0.5148 -0.8894 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6578 -0.2241 2.1389 32 1 1.6971 -1.7570 1.2356 33 1 5.0098 -1.3607 2.5260 34 1 3.8386 -2.4808 0.0878 35 1 5.1902 -1.3230 -0.0126 36 1 5.7692 -2.2439 -0.9011 37 1 8.2159 -2.3003 -0.6918 38 1 9.5893 -0.5324 -1.7110 39 1 8.5284 1.3072 -2.9456 40 1 6.6629 4.9966 -5.9306 41 1 1.6064 -1.7218 -1.2977 42 1 1.7644 -0.1581 -2.1388 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001451547310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:31:13 Heat of formation + Delta-G solvation = -67.098426 kcal Electronic energy + Delta-G solvation = -25943.560200 eV Core-core repulsion = 22276.123920 eV Total energy + Delta-G solvation = -3667.436280 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.48540 -39.05891 -37.64839 -36.71741 -35.89527 -33.85622 -32.49817 -30.83614 -30.21026 -29.34158 -26.91517 -25.82066 -25.28464 -22.81034 -22.27040 -21.45679 -20.42067 -19.32077 -18.11331 -17.28405 -17.26491 -16.66154 -15.96733 -15.36879 -15.07293 -14.79859 -14.73016 -14.42545 -14.03486 -13.86661 -13.76820 -13.37596 -13.12413 -12.93459 -12.62115 -12.37264 -12.27932 -12.06747 -12.02982 -11.90440 -11.46912 -11.27693 -11.06220 -10.97765 -10.84235 -10.75194 -10.37292 -10.23524 -10.10176 -9.65677 -9.15644 -8.94106 -8.45446 -8.32917 -7.54796 -6.50970 -4.17093 1.54034 2.07786 3.11764 3.26780 3.29811 3.39748 3.60651 3.99460 4.29378 4.32221 4.60882 4.67387 4.69075 4.79517 4.90728 5.02853 5.05760 5.09053 5.29686 5.33484 5.44983 5.46667 5.52311 5.58938 5.66735 5.71399 5.79522 5.83546 5.88756 5.98345 5.98934 6.09709 6.23402 6.29294 6.45464 6.68866 6.76792 6.93521 7.08475 7.40619 7.45873 7.60026 7.73001 7.90302 8.70012 8.83981 9.44590 10.54350 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.013061 B = 0.005814 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.254791 B = 4814.489060 C = 6411.227960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.078 0.922 4 C -0.105 4.105 5 C 0.089 3.911 6 H 0.061 0.939 7 O -0.565 6.565 8 C 0.048 3.952 9 N -0.614 5.614 10 C 0.570 3.430 11 O -0.517 6.517 12 C -0.221 4.221 13 C -0.062 4.062 14 C -0.218 4.218 15 C -0.053 4.053 16 C -0.223 4.223 17 C 0.200 3.800 18 O -0.179 6.179 19 C -0.395 4.395 20 H 0.109 0.891 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.890 3.110 24 H -0.275 1.275 25 H -0.283 1.283 26 H -0.234 1.234 27 C 0.117 3.883 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.380 0.620 34 H 0.072 0.928 35 H 0.122 0.878 36 H 0.132 0.868 37 H 0.114 0.886 38 H 0.114 0.886 39 H 0.139 0.861 40 H 0.282 0.718 41 H 0.063 0.937 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.236 -11.270 13.284 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.096 0.904 4 C -0.143 4.143 5 C 0.029 3.971 6 H 0.079 0.921 7 O -0.370 6.370 8 C -0.075 4.075 9 N -0.351 5.351 10 C 0.360 3.640 11 O -0.392 6.392 12 C -0.226 4.226 13 C -0.080 4.080 14 C -0.237 4.237 15 C -0.071 4.071 16 C -0.242 4.242 17 C 0.143 3.857 18 O -0.080 6.080 19 C -0.470 4.470 20 H 0.126 0.874 21 C -0.133 4.133 22 N -0.505 5.505 23 Si 0.715 3.285 24 H -0.200 1.200 25 H -0.208 1.208 26 H -0.157 1.157 27 C -0.006 4.006 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.149 0.851 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.156 0.844 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.384 -10.811 12.592 18.165 hybrid contribution 0.156 0.330 -0.206 0.419 sum -7.228 -10.481 12.386 17.762 Atomic orbital electron populations 1.21723 0.93964 1.02056 1.02223 1.21494 0.96224 1.00472 0.94399 0.90406 1.21530 0.93175 1.01546 0.98023 1.22186 0.95161 0.95688 0.84017 0.92057 1.86482 1.27054 1.81246 1.42231 1.23332 1.01962 0.97337 0.84841 1.47829 1.06131 1.62984 1.18132 1.18262 0.86690 0.76518 0.82481 1.90826 1.74934 1.44931 1.28536 1.18765 0.91713 1.00110 1.11975 1.21136 0.94941 0.96382 0.95539 1.20578 0.93307 1.01676 1.08183 1.20977 0.99048 0.92920 0.94164 1.21288 0.94236 1.02279 1.06438 1.18943 0.90617 0.86544 0.89552 1.83669 1.36079 1.32462 1.55746 1.20863 0.91390 1.08171 1.26557 0.87376 1.24470 1.00538 0.94243 0.94050 1.69629 1.36042 1.16304 1.28495 0.86343 0.83546 0.81293 0.77363 1.20041 1.20841 1.15667 1.21607 0.79716 1.00418 0.98831 0.92296 0.92074 0.92433 0.91160 0.91175 0.77263 0.91031 0.86100 0.85063 0.86817 0.86746 0.84352 0.90791 0.91828 0.88728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.20 37.16 0.34 -0.96 16 2 C -0.11 -1.22 2.87 -90.50 -0.26 -1.48 16 3 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 4 C -0.11 -1.12 4.82 -26.69 -0.13 -1.25 16 5 C 0.09 1.01 3.62 -26.61 -0.10 0.91 16 6 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 7 O -0.57 -5.81 13.32 -35.23 -0.47 -6.28 16 8 C 0.05 0.58 4.60 -3.71 -0.02 0.56 16 9 N -0.61 -9.57 2.97 -173.99 -0.52 -10.09 16 10 C 0.57 11.62 7.30 -12.47 -0.09 11.53 16 11 O -0.52 -12.81 15.34 -12.72 -0.20 -13.01 16 12 C -0.22 -4.41 5.53 -104.81 -0.58 -4.99 16 13 C -0.06 -0.96 7.43 -39.20 -0.29 -1.25 16 14 C -0.22 -3.19 10.02 -39.61 -0.40 -3.59 16 15 C -0.05 -0.86 10.03 -39.54 -0.40 -1.26 16 16 C -0.22 -4.58 9.16 -39.44 -0.36 -4.94 16 17 C 0.20 4.64 6.63 -38.60 -0.26 4.38 16 18 O -0.18 -4.84 7.20 -17.21 -0.12 -4.96 16 19 C -0.39 -11.15 9.95 30.90 0.31 -10.85 16 20 H 0.11 3.04 5.44 -52.49 -0.29 2.75 16 21 C 0.07 2.06 5.49 -17.52 -0.10 1.97 16 22 N -0.87 -25.05 13.96 55.48 0.77 -24.28 16 23 Si 0.89 22.64 28.62 -169.99 -4.86 17.78 16 24 H -0.27 -6.86 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.23 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.12 1.60 5.71 -3.71 -0.02 1.58 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.38 2.47 9.08 45.56 0.41 2.89 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.12 1.44 3.50 -53.26 -0.19 1.25 16 36 H 0.13 1.61 5.41 -52.49 -0.28 1.33 16 37 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.11 16 39 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 40 H 0.28 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.09 1.50 7.02 -51.93 -0.36 1.14 16 LS Contribution 338.89 15.07 5.11 5.11 Total: -1.00 -33.15 338.89 -7.42 -40.57 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.79 Total: 4.78 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: -2.34 Total: -9.62 kcal Atomic # 7 Polarization: -34.63 SS G_CDS: 0.26 Total: -34.37 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.79 Total: -24.25 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.86 Total: 17.78 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.15 -7.42 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001451547310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.529 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds