Wall clock time and date at job start Fri Apr 10 2020 21:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47135 * 2 1 4 4 N 1.46500 * 109.46722 * 179.97438 * 3 2 1 5 5 C 1.46501 * 119.99976 * 269.99389 * 4 3 2 6 6 C 1.50697 * 109.47337 * 270.00471 * 5 4 3 7 7 O 1.20829 * 120.00236 * 0.02562 * 6 5 4 8 8 O 1.34234 * 119.99849 * 179.97438 * 6 5 4 9 9 C 1.34777 * 119.99915 * 90.00329 * 4 3 2 10 10 O 1.21273 * 120.00160 * 359.97438 * 9 4 3 11 11 C 1.50701 * 119.99840 * 179.97438 * 9 4 3 12 12 H 1.09000 * 109.47361 * 59.99652 * 11 9 4 13 13 C 1.50704 * 109.47269 * 299.99653 * 11 9 4 14 14 H 1.08007 * 119.99759 * 325.08529 * 13 11 9 15 15 C 1.37871 * 120.00297 * 144.80333 * 13 11 9 16 16 N 1.31519 * 120.00201 * 184.90555 * 15 13 11 17 17 Si 1.86804 * 119.99928 * 4.91382 * 15 13 11 18 18 H 1.48498 * 109.47097 * 84.65991 * 17 15 13 19 19 H 1.48499 * 109.47010 * 204.66496 * 17 15 13 20 20 H 1.48501 * 109.46835 * 324.66056 * 17 15 13 21 21 C 1.50703 * 109.47293 * 179.97438 * 11 9 4 22 22 C 1.38237 * 119.99549 * 65.01859 * 21 11 9 23 23 C 1.38241 * 119.99635 * 179.81008 * 22 21 11 24 24 C 1.38235 * 119.99836 * 0.40087 * 23 22 21 25 25 C 1.38234 * 120.00060 * 359.85506 * 24 23 22 26 26 C 1.38228 * 119.99991 * 245.29529 * 21 11 9 27 27 H 1.08999 * 109.47129 * 60.00403 * 1 2 3 28 28 H 1.09006 * 109.47351 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47396 * 300.00098 * 1 2 3 30 30 H 1.09003 * 109.47101 * 239.99579 * 2 1 3 31 31 H 1.08999 * 109.46942 * 120.00118 * 2 1 3 32 32 H 1.08997 * 109.47058 * 59.99695 * 3 2 1 33 33 H 1.08999 * 109.46783 * 299.99809 * 3 2 1 34 34 H 1.09002 * 109.47083 * 30.00829 * 5 4 3 35 35 H 1.09000 * 109.46981 * 150.00279 * 5 4 3 36 36 H 0.96694 * 116.99601 * 179.97438 * 8 6 5 37 37 H 0.96999 * 119.99787 * 180.02562 * 16 15 13 38 38 H 1.07998 * 120.00263 * 0.02562 * 22 21 11 39 39 H 1.08001 * 120.00228 * 180.22984 * 23 22 21 40 40 H 1.08000 * 120.00052 * 179.83531 * 24 23 22 41 41 H 1.08006 * 119.99928 * 179.97438 * 25 24 23 42 42 H 1.07996 * 120.00078 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.2370 1.4426 1.2697 6 6 4.4880 2.8635 1.7045 7 8 4.0953 3.7818 1.0245 8 8 5.1469 3.1089 2.8480 9 6 4.1794 1.4422 -1.1663 10 8 3.5735 1.4417 -2.2168 11 6 5.6864 1.4427 -1.1657 12 1 6.0498 0.5530 -0.6513 13 6 6.1881 2.6736 -0.4555 14 1 5.6447 3.6034 -0.5373 15 6 7.3375 2.6114 0.3034 16 7 7.7227 3.6580 1.0005 17 14 8.3477 1.0406 0.3413 18 1 9.2742 1.0198 -0.8190 19 1 9.1313 0.9863 1.6016 20 1 7.4406 -0.1331 0.2716 21 6 6.1894 1.4418 -2.5863 22 6 5.9431 2.5263 -3.4073 23 6 6.4079 2.5271 -4.7093 24 6 7.1117 1.4400 -5.1925 25 6 7.3534 0.3533 -4.3731 26 6 6.8920 0.3541 -3.0700 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6767 1.9562 -0.8900 34 1 3.6476 0.9289 2.0292 35 1 5.1894 0.9288 1.1398 36 1 5.2842 4.0363 3.0850 37 1 8.5316 3.6143 1.5341 38 1 5.3906 3.3743 -3.0306 39 1 6.2187 3.3760 -5.3497 40 1 7.4726 1.4395 -6.2105 41 1 7.9030 -0.4963 -4.7508 42 1 7.0809 -0.4949 -2.4297 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589660607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:32:03 Heat of formation + Delta-G solvation = -119.176769 kcal Electronic energy + Delta-G solvation = -26524.126409 eV Core-core repulsion = 22854.431843 eV Total energy + Delta-G solvation = -3669.694567 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.59247 -40.39580 -39.51027 -37.08388 -36.45649 -35.64326 -34.09647 -33.20846 -31.64685 -29.71366 -29.31816 -27.07946 -25.14967 -23.40932 -23.08755 -22.76233 -21.88698 -19.83974 -19.22598 -18.67676 -18.08356 -17.75199 -17.22435 -17.05321 -16.36700 -16.15687 -15.93950 -15.67612 -15.24523 -15.22385 -14.75176 -14.37266 -14.26025 -14.02209 -13.78433 -13.72771 -13.52294 -13.22680 -12.94765 -12.90830 -12.74473 -12.60972 -12.24572 -12.18615 -12.02547 -11.83452 -11.61423 -11.56441 -11.38825 -11.24530 -10.85336 -10.49200 -9.72040 -9.65965 -9.38359 -8.26394 -6.31801 0.62276 0.68662 1.30400 1.41274 1.44180 1.59386 1.78788 2.09188 2.32183 2.68876 2.98687 3.14304 3.81481 4.05052 4.09136 4.17433 4.19281 4.20700 4.32139 4.35809 4.42264 4.43019 4.58853 4.61697 4.73801 4.76112 4.80205 4.88207 4.99426 5.17689 5.18190 5.27691 5.30035 5.39214 5.42256 5.65445 5.68860 5.72720 5.95594 6.03722 6.25510 6.27307 6.42460 6.74336 7.27423 7.30445 7.41817 8.85701 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.011079 B = 0.007860 C = 0.005456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.796255 B = 3561.534605 C = 5130.823207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.115 3.885 4 N -0.594 5.594 5 C 0.134 3.866 6 C 0.486 3.514 7 O -0.548 6.548 8 O -0.512 6.512 9 C 0.536 3.464 10 O -0.578 6.578 11 C 0.019 3.981 12 H 0.081 0.919 13 C -0.503 4.503 14 H 0.045 0.955 15 C 0.052 3.948 16 N -0.906 5.906 17 Si 0.901 3.099 18 H -0.276 1.276 19 H -0.280 1.280 20 H -0.230 1.230 21 C -0.056 4.056 22 C -0.104 4.104 23 C -0.134 4.134 24 C -0.136 4.136 25 C -0.123 4.123 26 C -0.151 4.151 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.153 0.847 35 H 0.115 0.885 36 H 0.411 0.589 37 H 0.268 0.732 38 H 0.081 0.919 39 H 0.131 0.869 40 H 0.150 0.850 41 H 0.150 0.850 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.854 -9.976 1.310 11.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C -0.007 4.007 4 N -0.325 5.325 5 C 0.009 3.991 6 C 0.328 3.672 7 O -0.438 6.438 8 O -0.323 6.323 9 C 0.327 3.673 10 O -0.458 6.458 11 C -0.002 4.002 12 H 0.099 0.901 13 C -0.541 4.541 14 H 0.063 0.937 15 C -0.150 4.150 16 N -0.543 5.543 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.206 1.206 20 H -0.153 1.153 21 C -0.057 4.057 22 C -0.122 4.122 23 C -0.152 4.152 24 C -0.154 4.154 25 C -0.141 4.141 26 C -0.169 4.169 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.073 0.927 34 H 0.170 0.830 35 H 0.133 0.867 36 H 0.269 0.731 37 H 0.078 0.922 38 H 0.099 0.901 39 H 0.149 0.851 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.220 -10.046 0.627 11.833 hybrid contribution 0.917 1.028 0.243 1.399 sum -5.304 -9.018 0.870 10.498 Atomic orbital electron populations 1.21658 0.93534 1.02697 1.02158 1.21834 0.97372 0.95248 1.02410 1.21607 0.78153 0.98294 1.02598 1.47519 1.06819 1.73123 1.05045 1.21041 1.00736 0.90260 0.87027 1.23796 0.72668 0.93476 0.77242 1.90617 1.51177 1.48095 1.53864 1.84345 1.70879 1.36515 1.40558 1.21175 0.90935 0.72558 0.82677 1.90556 1.71426 1.51684 1.32141 1.18587 0.89350 0.99754 0.92514 0.90126 1.20534 1.10301 0.94538 1.28708 0.93687 1.25470 0.96946 0.98678 0.93945 1.69960 1.24306 1.31197 1.28796 0.86437 0.80575 0.82499 0.77914 1.20203 1.20600 1.15310 1.20119 0.96510 0.93749 0.95319 1.20777 0.99350 0.97497 0.94611 1.21332 0.99134 0.99718 0.95022 1.21332 0.99714 0.93502 1.00834 1.21374 1.00040 0.99461 0.93245 1.21238 1.00734 0.97762 0.97216 0.93521 0.91100 0.91249 0.93661 0.89794 0.89380 0.92741 0.82978 0.86744 0.73050 0.92216 0.90068 0.85113 0.83218 0.83253 0.85874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.13 -3.15 6.26 30.59 0.19 -2.96 16 3 C 0.12 3.59 5.41 86.38 0.47 4.06 16 4 N -0.59 -22.16 1.96 -826.17 -1.62 -23.78 16 5 C 0.13 4.46 5.55 85.63 0.48 4.93 16 6 C 0.49 19.41 6.00 71.23 0.43 19.84 16 7 O -0.55 -26.75 15.25 21.96 0.33 -26.41 16 8 O -0.51 -18.35 13.42 -51.46 -0.69 -19.04 16 9 C 0.54 24.18 6.96 87.66 0.61 24.79 16 10 O -0.58 -28.79 14.95 -3.01 -0.04 -28.84 16 11 C 0.02 0.88 1.11 -13.03 -0.01 0.87 16 12 H 0.08 3.43 4.13 -2.39 -0.01 3.42 16 13 C -0.50 -26.06 4.51 25.60 0.12 -25.95 16 14 H 0.04 2.80 6.47 -2.91 -0.02 2.78 16 15 C 0.05 2.65 5.04 84.65 0.43 3.08 16 16 N -0.91 -49.21 13.96 21.45 0.30 -48.91 16 17 Si 0.90 38.53 27.05 68.60 1.86 40.39 16 18 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 19 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.23 -8.51 6.06 99.48 0.60 -7.91 16 21 C -0.06 -2.54 4.11 -19.87 -0.08 -2.63 16 22 C -0.10 -4.82 8.25 22.27 0.18 -4.64 16 23 C -0.13 -5.10 10.05 22.27 0.22 -4.87 16 24 C -0.14 -4.40 10.05 22.27 0.22 -4.17 16 25 C -0.12 -4.05 10.05 22.27 0.22 -3.82 16 26 C -0.15 -5.89 9.50 22.27 0.21 -5.67 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 32 H 0.09 2.37 8.07 -2.39 -0.02 2.35 16 33 H 0.05 1.99 7.42 -2.39 -0.02 1.97 16 34 H 0.15 3.35 8.07 -2.39 -0.02 3.33 16 35 H 0.11 3.95 5.89 -2.39 -0.01 3.93 16 36 H 0.41 13.29 9.10 -74.06 -0.67 12.62 16 37 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 38 H 0.08 4.21 7.93 -2.91 -0.02 4.19 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 41 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 42 H 0.12 4.27 7.95 -2.91 -0.02 4.25 16 Total: -1.00 -71.63 347.85 4.79 -66.84 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: 0.26 Total: 38.92 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: 4.40 Total: 0.84 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.32 Total: -72.69 kcal Atomic # 8 Polarization: -73.89 SS G_CDS: -0.40 Total: -74.30 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.86 Total: 40.39 kcal Total: -71.63 4.79 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589660607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.341 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds