Wall clock time and date at job start Fri Apr 10 2020 21:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47073 * 2 1 4 4 C 1.50698 * 109.47270 * 240.00023 * 2 1 3 5 5 H 1.07993 * 120.00348 * 240.00089 * 4 2 1 6 6 C 1.37883 * 119.99737 * 59.99929 * 4 2 1 7 7 N 1.31513 * 120.00342 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99738 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47292 * 89.99493 * 8 6 4 10 10 H 1.48497 * 109.46935 * 209.99835 * 8 6 4 11 11 H 1.48503 * 109.47178 * 329.99671 * 8 6 4 12 12 N 1.46491 * 109.47484 * 119.99768 * 2 1 3 13 13 C 1.46504 * 119.99971 * 60.00248 * 12 2 1 14 14 C 1.34780 * 120.00233 * 240.00345 * 12 2 1 15 15 O 1.21276 * 120.00313 * 359.97438 * 14 12 2 16 16 C 1.50700 * 119.99833 * 179.97438 * 14 12 2 17 17 C 1.53006 * 109.46952 * 179.97438 * 16 14 12 18 18 H 1.09001 * 109.70055 * 304.41853 * 17 16 14 19 19 C 1.53464 * 109.74096 * 183.81787 * 17 16 14 20 20 O 1.43183 * 108.23429 * 180.55184 * 19 17 16 21 21 C 1.36111 * 116.69497 * 46.25230 * 20 19 17 22 22 C 1.38703 * 119.39213 * 163.02682 * 21 20 19 23 23 C 1.38196 * 120.06576 * 180.09412 * 22 21 20 24 24 C 1.38255 * 120.11173 * 359.47653 * 23 22 21 25 25 C 1.38201 * 120.10919 * 0.33654 * 24 23 22 26 26 C 1.38701 * 120.07087 * 359.96733 * 25 24 23 27 27 O 1.36106 * 119.39571 * 179.77368 * 26 25 24 28 28 H 1.09002 * 109.47580 * 59.99971 * 1 2 3 29 29 H 1.09003 * 109.46983 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47040 * 300.00165 * 1 2 3 31 31 H 0.97002 * 120.00011 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46653 * 270.00062 * 13 12 2 33 33 H 1.08992 * 109.46796 * 29.99487 * 13 12 2 34 34 H 1.08995 * 109.47246 * 150.00485 * 13 12 2 35 35 H 1.09004 * 109.47198 * 59.99993 * 16 14 12 36 36 H 1.08995 * 109.47604 * 299.99411 * 16 14 12 37 37 H 1.08997 * 109.71336 * 300.23605 * 19 17 16 38 38 H 1.09005 * 109.71653 * 60.86799 * 19 17 16 39 39 H 1.07998 * 119.96926 * 359.81706 * 22 21 20 40 40 H 1.08002 * 119.94846 * 179.76222 * 23 22 21 41 41 H 1.07992 * 119.94650 * 180.31475 * 24 23 22 42 42 H 1.08008 * 119.96288 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3428 -2.1617 -4.4118 10 1 2.4865 -0.1413 -5.1122 11 1 3.6294 -1.7582 -3.7122 12 7 2.0184 -0.6905 1.1961 13 6 1.6645 -2.0931 1.4280 14 6 2.7932 -0.0355 2.0833 15 8 3.0865 1.1255 1.8912 16 6 3.2951 -0.7457 3.3140 17 6 4.1457 0.2158 4.1465 18 1 4.9502 0.6206 3.5323 19 6 4.7383 -0.5269 5.3516 20 8 5.5155 0.4035 6.1134 21 6 4.9458 1.6136 6.3659 22 6 5.4673 2.4151 7.3707 23 6 4.8986 3.6454 7.6402 24 6 3.8154 4.0855 6.9022 25 6 3.2935 3.2934 5.8971 26 6 3.8556 2.0548 5.6257 27 8 3.3277 1.2840 4.6359 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7081 1.1609 -3.4845 32 1 0.7377 -2.1443 1.9993 33 1 1.5296 -2.5967 0.4709 34 1 2.4630 -2.5817 1.9864 35 1 3.9005 -1.6024 3.0177 36 1 2.4472 -1.0879 3.9073 37 1 3.9338 -0.9263 5.9692 38 1 5.3751 -1.3409 5.0051 39 1 6.3158 2.0754 7.9460 40 1 5.3037 4.2663 8.4255 41 1 3.3763 5.0496 7.1117 42 1 2.4470 3.6393 5.3223 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294685204.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:31:44 Heat of formation + Delta-G solvation = -78.899522 kcal Electronic energy + Delta-G solvation = -25150.597946 eV Core-core repulsion = 21482.649932 eV Total energy + Delta-G solvation = -3667.948014 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.30073 -39.13777 -37.70060 -37.17504 -35.32321 -33.17141 -32.55178 -30.69306 -29.79719 -28.90205 -27.05185 -26.05889 -25.22644 -23.94231 -22.75791 -21.25813 -20.47709 -18.94468 -18.22803 -17.55295 -16.83009 -16.60200 -16.17857 -15.45045 -15.19334 -15.06057 -14.92973 -14.57170 -14.28498 -14.06830 -13.88474 -13.74129 -13.00801 -12.72909 -12.64448 -12.44714 -11.98485 -11.94439 -11.73393 -11.57068 -11.51950 -11.24979 -11.07652 -10.89070 -10.83102 -10.69366 -10.39867 -10.27165 -10.17871 -9.19231 -8.94568 -8.67727 -8.43907 -8.06323 -7.59518 -6.08448 -4.16825 1.25323 1.29155 2.98946 3.15873 3.24671 3.31902 3.34008 3.41034 3.69987 3.77835 4.23196 4.38827 4.59975 4.65542 4.75934 4.92344 5.03220 5.16059 5.20746 5.22923 5.29362 5.34614 5.42113 5.47155 5.71177 5.74330 5.86074 6.00677 6.09415 6.18262 6.32887 6.41181 6.59134 6.75344 6.83561 6.92751 7.06649 7.41294 7.46395 7.53469 7.70599 8.01060 8.19114 8.51588 8.81951 9.04799 9.49732 10.96826 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.025347 B = 0.003183 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.421665 B = 8795.890864 C = 9181.899123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.505 3.495 15 O -0.540 6.540 16 C -0.135 4.135 17 C 0.071 3.929 18 H 0.093 0.907 19 C 0.026 3.974 20 O -0.308 6.308 21 C 0.042 3.958 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.115 4.115 26 C 0.064 3.936 27 O -0.285 6.285 28 H 0.093 0.907 29 H 0.029 0.971 30 H 0.011 0.989 31 H 0.263 0.737 32 H 0.043 0.957 33 H 0.081 0.919 34 H 0.052 0.948 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.388 -2.373 18.934 19.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.417 6.417 16 C -0.175 4.175 17 C 0.013 3.987 18 H 0.111 0.889 19 C -0.050 4.050 20 O -0.222 6.222 21 C -0.003 4.003 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.133 4.133 26 C 0.018 3.982 27 O -0.199 6.199 28 H 0.111 0.889 29 H 0.048 0.952 30 H 0.030 0.970 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.130 0.870 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.437 -1.704 18.612 19.464 hybrid contribution 0.201 -0.814 -1.040 1.336 sum 5.638 -2.518 17.572 18.625 Atomic orbital electron populations 1.22080 0.98232 0.99333 1.00797 1.18922 0.90854 0.94529 0.79847 0.91927 1.21318 1.31901 1.13016 0.90342 0.92268 1.24902 0.94957 0.94961 0.98979 1.69882 1.36276 1.22557 1.23771 0.86495 0.79152 0.79300 0.82436 1.20616 1.21086 1.19946 1.48228 1.49186 1.11584 1.23620 1.21606 0.98708 0.83371 1.02422 1.20049 0.79776 0.87216 0.83918 1.90690 1.58009 1.16741 1.76307 1.21742 1.01339 0.98248 0.96165 1.22860 0.94351 0.87497 0.93953 0.88884 1.23706 0.97151 0.91449 0.92661 1.86280 1.42703 1.22476 1.70778 1.18954 0.96388 0.87401 0.97569 1.20384 1.01727 0.94721 0.96620 1.20855 0.97033 0.95720 1.00739 1.20911 0.96946 0.99741 0.95839 1.20542 1.02062 0.91060 0.99676 1.19048 0.95714 0.92900 0.90494 1.86464 1.41607 1.42320 1.49537 0.88871 0.95217 0.97026 0.92660 0.93884 0.90029 0.92935 0.87027 0.88201 0.90476 0.85948 0.85124 0.85350 0.85247 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.97 37.16 0.33 -3.19 16 2 C 0.26 6.61 2.64 -69.09 -0.18 6.43 16 3 H 0.06 1.88 6.90 -51.92 -0.36 1.52 16 4 C -0.53 -14.14 7.99 -34.44 -0.28 -14.42 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.53 16 8 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 N -0.59 -12.45 2.75 -175.27 -0.48 -12.93 16 13 C 0.08 1.32 9.24 59.85 0.55 1.87 16 14 C 0.50 10.23 7.56 -10.98 -0.08 10.15 16 15 O -0.54 -13.40 14.77 -8.64 -0.13 -13.53 16 16 C -0.13 -1.85 3.99 -27.88 -0.11 -1.96 16 17 C 0.07 1.02 2.55 -26.49 -0.07 0.95 16 18 H 0.09 1.50 7.98 -51.93 -0.41 1.08 16 19 C 0.03 0.28 6.56 37.40 0.25 0.53 16 20 O -0.31 -4.09 10.42 -32.87 -0.34 -4.44 16 21 C 0.04 0.58 6.49 -39.14 -0.25 0.33 16 22 C -0.12 -1.35 9.96 -39.43 -0.39 -1.74 16 23 C -0.13 -1.28 10.04 -39.59 -0.40 -1.67 16 24 C -0.12 -1.27 10.04 -39.59 -0.40 -1.67 16 25 C -0.11 -1.58 9.96 -39.42 -0.39 -1.97 16 26 C 0.06 0.99 6.49 -39.14 -0.25 0.74 16 27 O -0.29 -4.88 9.32 -44.38 -0.41 -5.29 16 28 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 29 H 0.03 0.65 7.67 -51.93 -0.40 0.26 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 1.40 7.02 -51.93 -0.36 1.03 16 34 H 0.05 0.63 6.44 -51.93 -0.33 0.30 16 35 H 0.11 1.16 7.40 -51.93 -0.38 0.78 16 36 H 0.10 1.18 8.11 -51.93 -0.42 0.75 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 42 H 0.14 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 345.25 15.07 5.20 5.20 Total: -1.00 -33.51 345.25 -8.22 -41.73 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.89 Total: 1.86 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.77 Total: -3.97 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.14 Total: -37.47 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.88 Total: -23.25 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.51 -8.22 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294685204.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.168 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds