Wall clock time and date at job start Fri Apr 10 2020 21:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 6 6 H 1.09002 * 109.51573 * 180.10070 * 5 2 1 7 7 C 1.53301 * 109.51544 * 300.26033 * 5 2 1 8 8 N 1.47151 * 108.38466 * 172.22471 * 7 5 2 9 9 S 1.65604 * 120.98118 * 129.44395 * 8 7 5 10 10 O 1.42102 * 104.27621 * 26.08467 * 9 8 7 11 11 O 1.42096 * 104.27673 * 153.94502 * 9 8 7 12 12 C 1.81403 * 104.44403 * 270.01601 * 9 8 7 13 13 C 1.53004 * 109.46609 * 179.97438 * 12 9 8 14 14 C 1.50698 * 109.46798 * 180.02562 * 13 12 9 15 15 H 1.07998 * 120.00187 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99780 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00309 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99969 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46924 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46796 * 120.00239 * 18 16 14 21 21 H 1.48497 * 109.47478 * 240.00284 * 18 16 14 22 22 C 1.47146 * 118.03333 * 309.45594 * 8 7 5 23 23 C 1.53301 * 108.38647 * 50.54365 * 22 8 7 24 24 O 1.42961 * 109.21598 * 307.69586 * 23 22 8 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 34 34 H 1.09000 * 109.67523 * 291.94796 * 7 5 2 35 35 H 1.08995 * 109.68034 * 52.49461 * 7 5 2 36 36 H 1.08994 * 109.47039 * 299.99934 * 12 9 8 37 37 H 1.08996 * 109.47332 * 60.00376 * 12 9 8 38 38 H 1.08998 * 109.47299 * 300.00214 * 13 12 9 39 39 H 1.08996 * 109.46960 * 60.00156 * 13 12 9 40 40 H 0.97000 * 120.00020 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.68741 * 290.81333 * 22 8 7 42 42 H 1.09003 * 109.67838 * 170.26109 * 22 8 7 43 43 H 1.08993 * 109.50965 * 187.77148 * 23 22 8 44 44 H 1.08998 * 109.51172 * 67.61258 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 2.0400 -0.7213 -1.2492 6 1 3.1300 -0.7232 -1.2490 7 6 1.5242 -2.1649 -1.2535 8 7 1.8686 -2.7769 -2.5466 9 16 2.6329 -4.2443 -2.6187 10 8 2.2626 -4.8920 -1.4093 11 8 2.2529 -4.7757 -3.8805 12 6 4.4001 -3.8350 -2.6064 13 6 5.2224 -5.1238 -2.6696 14 6 6.6905 -4.7839 -2.6587 15 1 7.0056 -3.7520 -2.6110 16 6 7.6315 -5.7904 -2.7086 17 7 7.2479 -7.0470 -2.7662 18 14 9.4514 -5.3691 -2.6959 19 1 9.6177 -3.8950 -2.6279 20 1 10.0960 -5.9946 -1.5133 21 1 10.0872 -5.8827 -3.9357 22 6 1.5139 -2.0464 -3.7737 23 6 2.0302 -0.6086 -3.6468 24 8 1.5640 -0.0480 -2.4171 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6768 1.9562 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1300 -0.7217 1.2490 33 1 1.6767 -0.2075 2.1393 34 1 1.9946 -2.7250 -0.4453 35 1 0.4423 -2.1685 -1.1220 36 1 4.6346 -3.2113 -3.4689 37 1 4.6417 -3.2950 -1.6909 38 1 4.9878 -5.7472 -1.8068 39 1 4.9810 -5.6642 -3.5848 40 1 7.9100 -7.7551 -2.8016 41 1 0.4309 -2.0382 -3.8961 42 1 1.9775 -2.5282 -4.6347 43 1 1.6598 -0.0138 -4.4817 44 1 3.1201 -0.6110 -3.6557 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408453034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:03 Heat of formation + Delta-G solvation = -133.166917 kcal Electronic energy + Delta-G solvation = -24788.075382 eV Core-core repulsion = 21253.218108 eV Total energy + Delta-G solvation = -3534.857274 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.99247 -36.83438 -36.50927 -35.53047 -34.75847 -33.92949 -31.20135 -30.66709 -27.77150 -27.45891 -26.55349 -25.63522 -24.34524 -22.11741 -21.19349 -19.12256 -18.61367 -17.69753 -16.60970 -16.60409 -16.01309 -15.70924 -15.36031 -15.15696 -14.80253 -14.58961 -14.10651 -13.88553 -13.79969 -13.59900 -13.33498 -12.57576 -12.53654 -12.37763 -12.10041 -11.93620 -11.87828 -11.80232 -11.66012 -11.62527 -11.34829 -11.17807 -11.12454 -11.00105 -10.94363 -10.79482 -10.54411 -10.43758 -10.32564 -10.25428 -9.73288 -9.24096 -8.69093 -8.54007 -6.15747 -4.21563 0.67177 2.90157 3.22880 3.30295 3.33491 3.54234 4.23700 4.34477 4.36389 4.55937 4.63249 4.64342 4.78702 4.86737 5.05296 5.13285 5.18468 5.19543 5.27606 5.33037 5.44085 5.49321 5.53200 5.55270 5.65214 5.66335 5.71073 5.78390 5.79363 5.88914 5.91277 5.97315 6.06362 6.21656 6.26390 6.42832 6.52994 7.04927 7.25553 7.31311 7.77179 8.13605 8.81980 9.43519 10.95294 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.016845 B = 0.004226 C = 0.003860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.792394 B = 6624.552272 C = 7251.871505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.137 4.137 4 C -0.151 4.151 5 C 0.086 3.914 6 H 0.066 0.934 7 C 0.090 3.910 8 N -1.010 6.010 9 S 2.588 3.412 10 O -0.962 6.962 11 O -0.962 6.962 12 C -0.589 4.589 13 C 0.028 3.972 14 C -0.520 4.520 15 H 0.062 0.938 16 C 0.058 3.942 17 N -0.890 5.890 18 Si 0.900 3.100 19 H -0.272 1.272 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.088 3.912 23 C 0.047 3.953 24 O -0.371 6.371 25 H 0.063 0.937 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.076 0.924 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.349 16.475 3.409 20.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.194 4.194 4 C -0.208 4.208 5 C 0.026 3.974 6 H 0.084 0.916 7 C -0.035 4.035 8 N -0.846 5.846 9 S 2.688 3.312 10 O -0.952 6.952 11 O -0.952 6.952 12 C -0.722 4.722 13 C -0.011 4.011 14 C -0.559 4.559 15 H 0.080 0.920 16 C -0.144 4.144 17 N -0.528 5.528 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.208 1.208 21 H -0.208 1.208 22 C -0.037 4.037 23 C -0.031 4.031 24 O -0.289 6.289 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.137 0.863 37 H 0.136 0.864 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.907 15.599 3.365 20.524 hybrid contribution 1.717 0.334 -0.073 1.751 sum -11.190 15.933 3.292 19.746 Atomic orbital electron populations 1.21898 0.93890 1.02073 1.02015 1.20529 0.96622 0.95984 0.92822 1.21794 1.00815 0.94817 1.01988 1.21990 1.01634 1.00755 0.96418 1.22523 0.97939 0.91011 0.85894 0.91631 1.22219 1.02176 0.94065 0.85060 1.58137 1.75024 1.40300 1.11157 1.05827 0.78326 0.72916 0.74178 1.93535 1.82335 1.72055 1.47281 1.93535 1.82108 1.76110 1.43479 1.30506 1.20454 1.11342 1.09924 1.18972 0.95485 0.87779 0.98856 1.21024 0.89648 0.93251 1.52023 0.92018 1.25068 0.99570 0.94944 0.94858 1.69962 1.34308 0.99066 1.49456 0.86417 0.84517 0.78568 0.77815 1.19652 1.20759 1.20751 1.22035 1.01833 0.92960 0.86914 1.22987 0.99077 0.93748 0.87321 1.87898 1.72984 1.54818 1.13197 0.91747 0.92772 0.92354 0.92730 0.92784 0.91801 0.91794 0.92060 0.91828 0.88289 0.90155 0.86330 0.86363 0.94840 0.94847 0.92542 0.90588 0.88290 0.87803 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 7.99 37.16 0.30 -0.94 16 2 C -0.06 -0.54 0.63 -154.51 -0.10 -0.64 16 3 C -0.14 -1.18 8.33 37.15 0.31 -0.87 16 4 C -0.15 -1.31 8.14 37.16 0.30 -1.01 16 5 C 0.09 0.94 2.04 -26.58 -0.05 0.88 16 6 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.09 1.12 5.01 -3.53 -0.02 1.10 16 8 N -1.01 -14.14 3.27 -113.06 -0.37 -14.51 16 9 S 2.59 47.12 5.42 -107.50 -0.58 46.54 16 10 O -0.96 -19.96 16.81 -57.54 -0.97 -20.92 16 11 O -0.96 -19.95 16.81 -57.54 -0.97 -20.92 16 12 C -0.59 -11.22 6.12 37.16 0.23 -10.99 16 13 C 0.03 0.71 4.98 -27.88 -0.14 0.58 16 14 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 15 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.32 13.29 55.43 0.74 -25.59 16 18 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 22 C 0.09 1.03 6.50 -3.53 -0.02 1.01 16 23 C 0.05 0.47 6.99 37.31 0.26 0.73 16 24 O -0.37 -4.11 9.04 -35.23 -0.32 -4.43 16 25 H 0.06 0.60 7.68 -51.93 -0.40 0.20 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.51 6.27 -51.93 -0.33 0.19 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.58 7.68 -51.93 -0.40 0.19 16 31 H 0.06 0.57 6.63 -51.93 -0.34 0.23 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.10 1.24 5.99 -51.93 -0.31 0.93 16 35 H 0.08 0.94 6.08 -51.93 -0.32 0.62 16 36 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 37 H 0.12 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.10 1.14 7.23 -51.93 -0.38 0.76 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 356.25 15.07 5.37 5.37 Total: -1.00 -33.82 356.25 -8.97 -42.80 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -7.51 Total: -1.16 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 0.65 Total: -23.20 kcal Atomic # 7 Polarization: -40.47 SS G_CDS: 0.37 Total: -40.10 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -2.25 Total: -46.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 16 Polarization: 47.12 SS G_CDS: -0.58 Total: 46.54 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.82 -8.97 -42.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408453034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.370 kcal (2) G-P(sol) polarization free energy of solvation -33.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds