Wall clock time and date at job start Fri Apr 10 2020 21:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47132 * 2 1 4 4 C 1.53002 * 109.47046 * 240.00073 * 2 1 3 5 5 C 1.53001 * 109.46978 * 120.00195 * 2 1 3 6 6 H 1.09003 * 109.55162 * 180.12571 * 5 2 1 7 7 C 1.53286 * 109.51289 * 60.00004 * 5 2 1 8 8 N 1.47156 * 108.38530 * 187.77537 * 7 5 2 9 9 S 1.65602 * 120.98236 * 230.55665 * 8 7 5 10 10 O 1.42101 * 104.27740 * 26.04376 * 9 8 7 11 11 O 1.42096 * 104.28045 * 153.90503 * 9 8 7 12 12 C 1.81402 * 104.44815 * 269.97777 * 9 8 7 13 13 C 1.53004 * 109.47062 * 180.02562 * 12 9 8 14 14 C 1.50701 * 109.47090 * 179.97438 * 13 12 9 15 15 H 1.07994 * 119.99878 * 359.97438 * 14 13 12 16 16 C 1.37878 * 119.99854 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99996 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 120.00143 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47190 * 89.99893 * 18 16 14 20 20 H 1.48499 * 109.47274 * 210.00121 * 18 16 14 21 21 H 1.48506 * 109.47246 * 329.99969 * 18 16 14 22 22 C 1.47148 * 118.03649 * 50.53434 * 8 7 5 23 23 C 1.53300 * 108.41473 * 309.44697 * 22 8 7 24 24 O 1.42961 * 109.51360 * 300.25251 * 5 2 1 25 25 H 1.09004 * 109.46842 * 300.00209 * 1 2 3 26 26 H 1.09004 * 109.47026 * 59.99780 * 1 2 3 27 27 H 1.08998 * 109.47158 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47335 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.47344 * 300.00025 * 3 2 1 30 30 H 1.09004 * 109.47427 * 60.00149 * 3 2 1 31 31 H 1.08998 * 109.47083 * 299.99974 * 4 2 1 32 32 H 1.09004 * 109.47089 * 60.00185 * 4 2 1 33 33 H 1.08997 * 109.47001 * 180.02562 * 4 2 1 34 34 H 1.08998 * 109.68904 * 68.04960 * 7 5 2 35 35 H 1.09001 * 109.71424 * 307.51023 * 7 5 2 36 36 H 1.08998 * 109.47158 * 299.99837 * 12 9 8 37 37 H 1.08996 * 109.47704 * 60.00106 * 12 9 8 38 38 H 1.09004 * 109.46460 * 299.99652 * 13 12 9 39 39 H 1.08993 * 109.47423 * 59.99492 * 13 12 9 40 40 H 0.96996 * 119.99963 * 180.02562 * 17 16 14 41 41 H 1.09002 * 109.68336 * 69.19042 * 22 8 7 42 42 H 1.08999 * 109.68144 * 189.70712 * 22 8 7 43 43 H 1.08998 * 109.51580 * 172.24632 * 23 22 8 44 44 H 1.08997 * 109.51046 * 292.39879 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 1 3.1300 -0.7201 1.2517 7 6 1.5296 -2.1667 1.2501 8 7 1.8733 -2.7795 2.5431 9 16 2.6428 -4.2441 2.6146 10 8 3.3492 -4.3293 1.3845 11 8 3.3339 -4.2167 3.8559 12 6 1.2977 -5.4603 2.6616 13 6 1.8873 -6.8705 2.7301 14 6 0.7699 -7.8808 2.7698 15 1 -0.2580 -7.5502 2.7487 16 6 1.0598 -9.2273 2.8330 17 7 0.0846 -10.1090 2.8682 18 14 2.8378 -9.7992 2.8688 19 1 3.3014 -9.8867 4.2768 20 1 2.9408 -11.1357 2.2298 21 1 3.6846 -8.8298 2.1281 22 6 1.5135 -2.0522 3.7706 23 6 2.0249 -0.6122 3.6479 24 8 1.5591 -0.0516 2.4171 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2493 32 1 1.6767 -0.2074 -2.1393 33 1 3.1300 -0.7216 -1.2490 34 1 2.0036 -2.7240 0.4422 35 1 0.4478 -2.1747 1.1162 36 1 0.6780 -5.2829 3.5406 37 1 0.6891 -5.3639 1.7626 38 1 2.5072 -7.0481 1.8513 39 1 2.4957 -6.9667 3.6293 40 1 0.2886 -11.0562 2.9130 41 1 0.4301 -2.0480 3.8907 42 1 1.9764 -2.5340 4.6318 43 1 1.6507 -0.0205 4.4833 44 1 3.1148 -0.6108 3.6591 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408453035.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:06 Heat of formation + Delta-G solvation = -128.733503 kcal Electronic energy + Delta-G solvation = -24651.170299 eV Core-core repulsion = 21116.505273 eV Total energy + Delta-G solvation = -3534.665026 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02021 -36.95069 -36.57215 -35.66801 -34.82734 -33.97832 -31.51136 -30.69389 -27.82930 -27.47933 -26.65962 -25.92009 -24.40565 -21.91421 -21.13193 -19.13056 -18.69751 -17.85506 -17.02032 -16.67557 -16.03866 -15.80956 -15.35859 -15.16032 -14.93845 -14.45815 -14.13962 -13.93515 -13.84255 -13.74025 -13.44780 -12.83384 -12.60362 -12.42104 -12.15885 -12.02446 -11.94709 -11.93614 -11.80438 -11.73292 -11.33872 -11.28284 -11.24512 -11.24037 -10.97600 -10.83114 -10.48915 -10.40390 -10.25731 -10.15449 -9.72662 -9.43480 -8.74490 -8.68897 -6.19069 -4.20595 0.54666 2.77837 3.24310 3.31774 3.35634 3.50513 4.11038 4.28555 4.33342 4.50796 4.57044 4.59693 4.75519 4.84032 5.01525 5.09449 5.12666 5.17118 5.23626 5.30429 5.40805 5.45477 5.47737 5.50827 5.52355 5.60699 5.65116 5.73478 5.76003 5.84182 5.87570 5.92518 6.01622 6.17727 6.23680 6.24093 6.45551 6.77631 6.90016 7.01441 7.51700 8.33925 8.81917 9.40390 10.93298 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.003784 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.125681 B = 7398.768534 C = 7690.332477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C -0.136 4.136 4 C -0.149 4.149 5 C 0.092 3.908 6 H 0.063 0.937 7 C 0.083 3.917 8 N -1.008 6.008 9 S 2.586 3.414 10 O -0.962 6.962 11 O -0.963 6.963 12 C -0.580 4.580 13 C -0.007 4.007 14 C -0.520 4.520 15 H 0.078 0.922 16 C 0.072 3.928 17 N -0.895 5.895 18 Si 0.869 3.131 19 H -0.271 1.271 20 H -0.281 1.281 21 H -0.262 1.262 22 C 0.082 3.918 23 C 0.053 3.947 24 O -0.372 6.372 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.104 0.896 35 H 0.080 0.920 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.032 0.968 39 H 0.028 0.972 40 H 0.267 0.733 41 H 0.076 0.924 42 H 0.104 0.896 43 H 0.104 0.896 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.933 22.732 -3.644 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.060 4.060 3 C -0.194 4.194 4 C -0.206 4.206 5 C 0.033 3.967 6 H 0.081 0.919 7 C -0.042 4.042 8 N -0.845 5.845 9 S 2.685 3.315 10 O -0.952 6.952 11 O -0.953 6.953 12 C -0.714 4.714 13 C -0.046 4.046 14 C -0.559 4.559 15 H 0.096 0.904 16 C -0.131 4.131 17 N -0.533 5.533 18 Si 0.695 3.305 19 H -0.196 1.196 20 H -0.207 1.207 21 H -0.187 1.187 22 C -0.044 4.044 23 C -0.025 4.025 24 O -0.290 6.290 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.050 0.950 39 H 0.046 0.954 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.730 22.596 -3.631 23.048 hybrid contribution 0.278 -0.896 0.147 0.950 sum 3.008 21.700 -3.484 22.183 Atomic orbital electron populations 1.21902 0.93747 1.02163 1.02091 1.20541 0.96713 0.95934 0.92806 1.21795 1.00680 0.94863 1.02040 1.21971 1.01521 1.00743 0.96379 1.22408 0.97745 0.90738 0.85832 0.91894 1.22310 1.01755 0.94845 0.85285 1.58008 1.78170 1.37000 1.11309 1.05804 0.77141 0.74350 0.74179 1.93533 1.70371 1.85717 1.45624 1.93532 1.71032 1.85698 1.45055 1.30327 1.16983 1.13131 1.10921 1.19418 0.98187 0.89232 0.97792 1.20839 0.93153 0.89670 1.52237 0.90408 1.24987 0.97358 0.96629 0.94114 1.69880 1.31754 1.01839 1.49807 0.86925 0.85553 0.78758 0.79216 1.19640 1.20688 1.18653 1.22119 1.01385 0.93681 0.87184 1.22895 0.98950 0.93455 0.87234 1.87909 1.72778 1.55077 1.13242 0.91687 0.92728 0.92283 0.92922 0.92666 0.91794 0.91806 0.91837 0.92203 0.87788 0.90189 0.85646 0.85648 0.94965 0.95416 0.92342 0.90568 0.87826 0.87754 0.92700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 7.99 37.16 0.30 -0.91 16 2 C -0.06 -0.53 0.63 -154.51 -0.10 -0.63 16 3 C -0.14 -1.12 8.33 37.16 0.31 -0.81 16 4 C -0.15 -1.26 8.13 37.16 0.30 -0.96 16 5 C 0.09 1.00 2.04 -26.58 -0.05 0.95 16 6 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.08 0.99 5.18 -3.54 -0.02 0.97 16 8 N -1.01 -13.42 3.27 -113.06 -0.37 -13.80 16 9 S 2.59 44.19 5.47 -107.50 -0.59 43.60 16 10 O -0.96 -18.60 16.62 -57.54 -0.96 -19.55 16 11 O -0.96 -18.53 16.62 -57.54 -0.96 -19.48 16 12 C -0.58 -10.65 6.12 37.16 0.23 -10.42 16 13 C -0.01 -0.16 4.05 -27.88 -0.11 -0.28 16 14 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 15 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 18 Si 0.87 21.42 27.47 -169.99 -4.67 16.76 16 19 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 22 C 0.08 0.91 6.67 -3.53 -0.02 0.89 16 23 C 0.05 0.53 6.99 37.31 0.26 0.79 16 24 O -0.37 -4.07 9.04 -35.23 -0.32 -4.39 16 25 H 0.06 0.59 7.68 -51.93 -0.40 0.19 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.50 6.28 -51.93 -0.33 0.18 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.56 7.69 -51.93 -0.40 0.16 16 31 H 0.06 0.56 6.62 -51.93 -0.34 0.21 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 1.27 5.65 -51.93 -0.29 0.98 16 35 H 0.08 0.84 6.09 -51.93 -0.32 0.52 16 36 H 0.13 2.10 8.14 -51.92 -0.42 1.67 16 37 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 38 H 0.03 0.76 7.20 -51.93 -0.37 0.39 16 39 H 0.03 0.65 7.57 -51.93 -0.39 0.25 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.10 1.16 6.88 -51.93 -0.36 0.80 16 43 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 351.97 15.07 5.30 5.30 Total: -1.00 -33.62 351.97 -8.56 -42.18 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.44 Total: -1.12 kcal Atomic # 6 Polarization: -23.95 SS G_CDS: 0.66 Total: -23.29 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 0.40 Total: -40.01 kcal Atomic # 8 Polarization: -41.19 SS G_CDS: -2.23 Total: -43.42 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.76 kcal Atomic # 16 Polarization: 44.19 SS G_CDS: -0.59 Total: 43.60 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.62 -8.56 -42.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408453035.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.558 kcal (2) G-P(sol) polarization free energy of solvation -33.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds