Wall clock time and date at job start Fri Apr 10 2020 21:33:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53005 * 109.47251 * 2 1 4 4 C 1.50702 * 109.47387 * 239.99832 * 2 1 3 5 5 H 1.07994 * 119.99796 * 240.00256 * 4 2 1 6 6 C 1.37882 * 119.99754 * 59.99695 * 4 2 1 7 7 N 1.31511 * 120.00092 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47388 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47192 * 120.00024 * 8 6 4 11 11 H 1.48502 * 109.47109 * 240.00464 * 8 6 4 12 12 C 1.53001 * 109.47244 * 119.99658 * 2 1 3 13 13 N 1.46498 * 109.47089 * 299.99889 * 12 2 1 14 14 S 1.65602 * 119.99612 * 164.71987 * 13 12 2 15 15 O 1.42109 * 104.27511 * 181.34803 * 14 13 12 16 16 O 1.42098 * 104.28120 * 309.20801 * 14 13 12 17 17 C 1.81394 * 104.44973 * 65.28269 * 14 13 12 18 18 C 1.53003 * 109.47387 * 179.97438 * 17 14 13 19 19 H 1.08998 * 109.48290 * 60.01978 * 18 17 14 20 20 C 1.53098 * 109.47976 * 180.02562 * 18 17 14 21 21 C 1.53177 * 109.15982 * 177.58929 * 20 18 17 22 22 C 1.53179 * 109.03886 * 303.01680 * 21 20 18 23 23 C 1.53097 * 109.16168 * 56.98120 * 22 21 20 24 24 O 1.42906 * 109.47519 * 299.99370 * 18 17 14 25 25 H 1.09003 * 109.47086 * 300.00048 * 1 2 3 26 26 H 1.08996 * 109.47200 * 59.99979 * 1 2 3 27 27 H 1.08999 * 109.47028 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47209 * 180.02562 * 3 2 1 29 29 H 1.09003 * 109.46916 * 299.99766 * 3 2 1 30 30 H 1.08994 * 109.47295 * 59.99775 * 3 2 1 31 31 H 0.96997 * 120.00050 * 179.97438 * 7 6 4 32 32 H 1.08996 * 109.47377 * 180.02562 * 12 2 1 33 33 H 1.08999 * 109.46886 * 60.00185 * 12 2 1 34 34 H 0.97001 * 120.00384 * 345.00465 * 13 12 2 35 35 H 1.09009 * 109.47044 * 299.99503 * 17 14 13 36 36 H 1.09001 * 109.47747 * 59.99183 * 17 14 13 37 37 H 1.09004 * 109.51937 * 297.49288 * 20 18 17 38 38 H 1.08996 * 109.52292 * 57.68278 * 20 18 17 39 39 H 1.09001 * 109.54334 * 183.15134 * 21 20 18 40 40 H 1.09000 * 109.54438 * 62.88690 * 21 20 18 41 41 H 1.08996 * 109.52116 * 297.08023 * 22 21 20 42 42 H 1.08998 * 109.57665 * 176.91691 * 22 21 20 43 43 H 1.08997 * 109.47919 * 182.40909 * 23 22 21 44 44 H 1.08998 * 109.47901 * 62.37054 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4828 7 7 0.9434 0.8301 -2.6034 8 14 2.3213 -1.1204 -4.0079 9 1 3.1455 -2.2878 -3.6037 10 1 1.1661 -1.5868 -4.8160 11 1 3.1466 -0.1874 -4.8164 12 6 2.0399 -0.7212 1.2493 13 7 1.5517 -0.0305 2.4454 14 16 1.6193 -0.7807 3.9202 15 8 1.0417 0.1578 4.8175 16 8 1.0162 -2.0478 3.6969 17 6 3.3928 -0.9693 4.2512 18 6 3.5889 -1.6579 5.6033 19 1 3.1171 -2.6402 5.5829 20 6 5.0857 -1.8166 5.8831 21 6 5.2745 -2.4515 7.2642 22 6 4.5760 -1.5816 8.3138 23 6 3.0989 -1.4319 7.9401 24 8 2.9942 -0.8648 6.6326 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 0.7094 1.1617 -3.4844 32 1 3.1299 -0.7208 1.2495 33 1 1.6766 -1.7488 1.2493 34 1 1.1849 0.8646 2.3729 35 1 3.8467 -1.5740 3.4659 36 1 3.8651 0.0129 4.2721 37 1 5.5323 -2.4579 5.1232 38 1 5.5657 -0.8382 5.8633 39 1 6.3381 -2.5162 7.4936 40 1 4.8378 -3.4502 7.2692 41 1 5.0457 -0.5985 8.3431 42 1 4.6580 -2.0538 9.2928 43 1 2.6062 -0.7787 8.6602 44 1 2.6203 -2.4112 7.9505 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416530313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:34 Heat of formation + Delta-G solvation = -137.093873 kcal Electronic energy + Delta-G solvation = -24332.260375 eV Core-core repulsion = 20797.232815 eV Total energy + Delta-G solvation = -3535.027559 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 305.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.71361 -36.97487 -36.58357 -35.54421 -33.95998 -33.23668 -33.14630 -30.51053 -28.34680 -25.66564 -25.51042 -24.63293 -24.47988 -22.84991 -20.62227 -19.09694 -18.77509 -17.40546 -16.83387 -16.35290 -16.20126 -15.73833 -15.42342 -14.90126 -14.85183 -14.68611 -14.07647 -13.66122 -13.49254 -13.16604 -13.01792 -12.86420 -12.62497 -12.21676 -11.72337 -11.69519 -11.67730 -11.61401 -11.44451 -11.41542 -11.20914 -11.08824 -10.93338 -10.79520 -10.63499 -10.47407 -10.35927 -10.15677 -9.72555 -9.60627 -9.30833 -8.77675 -8.72225 -8.36099 -6.00388 -4.11377 0.58493 3.16234 3.26851 3.35402 3.35941 3.38961 4.00832 4.35728 4.39461 4.43637 4.49581 4.55144 4.66397 4.79903 4.84189 5.09853 5.21335 5.26071 5.28761 5.39602 5.47101 5.57924 5.59441 5.70212 5.79461 5.81944 5.95796 6.18509 6.47049 6.53183 6.78623 6.87379 6.95285 7.03344 7.11144 7.38323 7.59814 7.62248 7.71659 8.06175 8.17654 8.41217 8.89275 9.54381 11.00738 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.027643 B = 0.003436 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.672031 B = 8148.081078 C = 8667.610610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.063 3.937 3 C -0.132 4.132 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.124 3.876 13 N -1.112 6.112 14 S 2.615 3.385 15 O -0.954 6.954 16 O -0.961 6.961 17 C -0.633 4.633 18 C 0.099 3.901 19 H 0.074 0.926 20 C -0.142 4.142 21 C -0.125 4.125 22 C -0.158 4.158 23 C 0.058 3.942 24 O -0.375 6.375 25 H 0.011 0.989 26 H 0.083 0.917 27 H 0.027 0.973 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.009 0.991 31 H 0.259 0.741 32 H 0.049 0.951 33 H 0.067 0.933 34 H 0.416 0.584 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.226 -3.867 17.818 20.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.061 3.939 3 C -0.190 4.190 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.721 3.279 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.211 1.211 12 C -0.002 4.002 13 N -0.874 5.874 14 S 2.706 3.294 15 O -0.944 6.944 16 O -0.951 6.951 17 C -0.760 4.760 18 C 0.040 3.960 19 H 0.091 0.909 20 C -0.181 4.181 21 C -0.163 4.163 22 C -0.196 4.196 23 C -0.018 4.018 24 O -0.294 6.294 25 H 0.030 0.970 26 H 0.102 0.898 27 H 0.046 0.954 28 H 0.045 0.955 29 H 0.104 0.896 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.252 0.748 35 H 0.163 0.837 36 H 0.159 0.841 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.118 0.882 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.406 -4.027 18.170 20.031 hybrid contribution 1.155 -0.209 -1.105 1.612 sum 8.561 -4.236 17.065 19.557 Atomic orbital electron populations 1.21809 0.97564 0.99352 1.00236 1.18254 0.93049 0.92578 0.89998 1.21838 0.98358 0.98510 1.00294 1.21059 1.31556 1.12094 0.90033 0.92402 1.24896 0.94882 0.94927 0.98861 1.69824 1.36573 1.22725 1.23092 0.86536 0.78621 0.79671 0.83118 1.19814 1.21075 1.21136 1.21666 0.96870 0.96296 0.85324 1.55589 1.78275 1.30578 1.22957 1.04743 0.76877 0.74585 0.73216 1.93573 1.74481 1.62217 1.64100 1.93580 1.72544 1.44141 1.84851 1.30703 1.30595 1.11159 1.03493 1.21654 0.94985 0.93844 0.85515 0.90864 1.22153 0.95567 1.02562 0.97769 1.21633 1.01159 0.99064 0.94441 1.22216 0.96817 1.01262 0.99256 1.22654 0.95697 0.99238 0.84234 1.88072 1.78049 1.47500 1.15784 0.97044 0.89801 0.95374 0.95485 0.89608 0.97188 0.93057 0.93295 0.91475 0.74763 0.83688 0.84135 0.90288 0.90476 0.91126 0.91552 0.90815 0.90695 0.88189 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.08 37.15 0.30 -2.81 16 2 C 0.06 1.45 0.51 -155.66 -0.08 1.37 16 3 C -0.13 -2.94 8.08 37.16 0.30 -2.64 16 4 C -0.51 -13.00 8.01 -34.44 -0.28 -13.28 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.05 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.88 -23.60 9.35 55.43 0.52 -23.08 16 8 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 9 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.12 2.40 4.97 -4.04 -0.02 2.38 16 13 N -1.11 -19.15 5.22 -10.61 -0.06 -19.21 16 14 S 2.62 42.34 5.26 -107.50 -0.57 41.78 16 15 O -0.95 -17.81 17.41 -61.90 -1.08 -18.88 16 16 O -0.96 -18.44 17.48 -57.54 -1.01 -19.45 16 17 C -0.63 -7.55 5.80 37.16 0.22 -7.33 16 18 C 0.10 1.14 2.69 -26.68 -0.07 1.07 16 19 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 20 C -0.14 -1.27 5.42 -26.59 -0.14 -1.42 16 21 C -0.13 -0.94 6.03 -26.55 -0.16 -1.10 16 22 C -0.16 -1.19 6.14 -26.59 -0.16 -1.35 16 23 C 0.06 0.55 6.84 37.21 0.25 0.81 16 24 O -0.37 -4.87 9.45 -42.00 -0.40 -5.26 16 25 H 0.01 0.23 7.20 -51.93 -0.37 -0.14 16 26 H 0.08 2.16 6.07 -51.93 -0.32 1.84 16 27 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 30 H 0.01 0.18 6.60 -51.93 -0.34 -0.16 16 31 H 0.26 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 1.34 7.68 -51.93 -0.40 0.94 16 34 H 0.42 7.07 6.44 -34.47 -0.22 6.85 16 35 H 0.14 1.44 8.14 -51.92 -0.42 1.02 16 36 H 0.14 1.49 8.14 -51.92 -0.42 1.07 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 352.84 15.07 5.32 5.32 Total: -1.00 -31.59 352.84 -9.65 -41.23 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -7.43 Total: 4.87 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 0.06 Total: -22.69 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.46 Total: -42.29 kcal Atomic # 8 Polarization: -41.11 SS G_CDS: -2.48 Total: -43.59 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 42.34 SS G_CDS: -0.57 Total: 41.78 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.59 -9.65 -41.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416530313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.859 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds