Wall clock time and date at job start Fri Apr 10 2020 21:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35649 * 116.99625 * 2 1 4 4 C 1.39344 * 120.54019 * 359.97438 * 3 2 1 5 5 C 1.38308 * 118.43652 * 179.77485 * 4 3 2 6 6 C 1.38766 * 119.44321 * 0.49188 * 5 4 3 7 7 N 1.31378 * 121.06599 * 359.49134 * 6 5 4 8 8 C 1.32854 * 121.69879 * 0.25464 * 7 6 5 9 9 C 1.47833 * 119.78393 * 180.02562 * 8 7 6 10 10 O 1.21563 * 119.99911 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00116 * 0.02562 * 9 8 7 12 12 C 1.47426 * 125.64883 * 359.69385 * 11 9 8 13 13 C 1.55125 * 104.72251 * 155.81423 * 12 11 9 14 14 C 1.55154 * 101.48878 * 37.29678 * 13 12 11 15 15 H 1.09002 * 110.72408 * 82.69121 * 14 13 12 16 16 N 1.46497 * 110.87333 * 205.90013 * 14 13 12 17 17 C 1.36941 * 119.99631 * 268.60694 * 16 14 13 18 18 H 1.07999 * 120.00198 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99907 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99994 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99866 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47025 * 90.00139 * 21 19 17 23 23 H 1.48497 * 109.47039 * 210.00178 * 21 19 17 24 24 H 1.48497 * 109.47090 * 330.00327 * 21 19 17 25 25 C 1.47018 * 125.64876 * 179.97438 * 11 9 8 26 26 H 1.09001 * 109.88733 * 300.44562 * 25 11 9 27 27 C 1.53000 * 109.88309 * 61.45634 * 25 11 9 28 28 H 1.08997 * 109.46818 * 60.00504 * 1 2 3 29 29 H 1.09006 * 109.46706 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47341 * 299.99691 * 1 2 3 31 31 H 1.07994 * 120.78402 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.27378 * 180.23716 * 5 4 3 33 33 H 1.08002 * 119.46836 * 179.77550 * 6 5 4 34 34 H 1.08999 * 110.36646 * 274.74917 * 12 11 9 35 35 H 1.09006 * 110.36641 * 37.06180 * 12 11 9 36 36 H 1.08997 * 111.19546 * 279.18815 * 13 12 11 37 37 H 1.09000 * 110.93836 * 155.28949 * 13 12 11 38 38 H 0.96998 * 120.00011 * 88.60964 * 16 14 13 39 39 H 0.96999 * 119.99844 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.47088 * 58.53963 * 27 25 11 41 41 H 1.08997 * 109.47462 * 178.54623 * 27 25 11 42 42 H 1.09005 * 109.46765 * 298.54649 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5929 0.0043 6 6 3.3571 3.6012 -0.0009 7 7 4.0418 2.4800 -0.0004 8 6 3.4410 1.2951 0.0002 9 6 4.2532 0.0598 0.0014 10 8 3.7074 -1.0264 0.0014 11 7 5.5986 0.1380 0.0025 12 6 6.3869 1.3838 -0.0038 13 6 7.7536 0.9887 0.6147 14 6 7.9570 -0.4344 0.0311 15 1 8.3707 -0.3828 -0.9761 16 7 8.8180 -1.2378 0.9025 17 6 10.1721 -1.2560 0.6989 18 1 10.6052 -0.6784 -0.1044 19 6 10.9879 -2.0176 1.5242 20 7 12.2894 -2.0347 1.3288 21 14 10.2388 -3.0171 2.9132 22 1 9.8951 -4.3740 2.4172 23 1 11.2164 -3.1295 4.0253 24 1 9.0093 -2.3424 3.4013 25 6 6.5233 -1.0050 0.0043 26 1 6.3520 -1.6191 0.8883 27 6 6.3172 -1.8430 -1.2591 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2174 2.3527 -0.0005 32 1 1.4193 4.5222 0.0079 33 1 3.8828 4.5447 -0.0009 34 1 6.5194 1.7437 -1.0241 35 1 5.9000 2.1440 0.6071 36 1 7.7002 0.9607 1.7030 37 1 8.5417 1.6639 0.2816 38 1 8.4290 -1.7568 1.6237 39 1 12.8596 -2.5666 1.9058 40 1 6.4824 -1.2209 -2.1388 41 1 7.0232 -2.6734 -1.2635 42 1 5.2989 -2.2317 -1.2751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000987411607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:31:51 Heat of formation + Delta-G solvation = 1.982983 kcal Electronic energy + Delta-G solvation = -25322.471705 eV Core-core repulsion = 21690.323770 eV Total energy + Delta-G solvation = -3632.147934 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.17312 -39.51872 -38.41197 -37.25070 -34.18539 -32.83729 -31.52338 -31.09830 -30.71402 -29.40974 -27.74657 -25.25893 -24.95757 -23.23458 -22.55850 -22.26699 -20.33982 -19.53189 -18.29494 -17.62336 -17.40651 -16.93902 -16.32289 -15.98070 -15.48603 -14.97013 -14.65645 -14.48970 -14.08053 -14.01036 -13.84475 -13.37333 -13.21852 -13.01741 -12.64516 -12.56056 -12.13411 -11.95302 -11.80353 -11.79626 -11.67255 -11.23819 -11.09047 -10.83964 -10.51113 -10.39135 -10.16377 -10.05663 -9.86117 -9.57190 -9.45158 -8.87962 -8.78079 -8.24114 -7.26948 -5.76922 -3.13229 0.43163 0.90559 2.79780 2.83328 3.11513 3.40654 3.44570 3.48196 3.70838 4.02976 4.23075 4.35469 4.60002 4.60435 4.74950 4.77875 4.85875 5.01864 5.15306 5.17020 5.25484 5.36148 5.53176 5.60751 5.63860 5.66416 5.76164 5.87591 5.94979 6.01085 6.13147 6.25486 6.42391 6.48313 6.63667 6.67100 6.75941 6.90089 6.92908 7.49248 7.82108 7.98500 8.40111 8.41959 9.19240 9.91940 10.11026 11.41062 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.003533 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.284064 B = 7922.739318 C = 8494.784678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.135 3.865 4 C -0.177 4.177 5 C -0.110 4.110 6 C 0.054 3.946 7 N -0.412 5.412 8 C 0.054 3.946 9 C 0.580 3.420 10 O -0.522 6.522 11 N -0.591 5.591 12 C 0.103 3.897 13 C -0.159 4.159 14 C 0.181 3.819 15 H 0.076 0.924 16 N -0.739 5.739 17 C -0.244 4.244 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.882 3.118 22 H -0.283 1.283 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.124 3.876 26 H 0.073 0.927 27 C -0.155 4.155 28 H 0.056 0.944 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.145 0.855 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.063 0.937 35 H 0.097 0.903 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.362 0.638 39 H 0.260 0.740 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.580 12.555 -3.839 28.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.084 3.916 4 C -0.204 4.204 5 C -0.131 4.131 6 C -0.106 4.106 7 N -0.124 5.124 8 C -0.086 4.086 9 C 0.366 3.634 10 O -0.398 6.398 11 N -0.324 5.324 12 C -0.020 4.020 13 C -0.200 4.200 14 C 0.070 3.930 15 H 0.094 0.906 16 N -0.381 5.381 17 C -0.374 4.374 18 H 0.110 0.890 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.712 3.288 22 H -0.210 1.210 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.020 3.980 26 H 0.091 0.909 27 C -0.213 4.213 28 H 0.074 0.926 29 H 0.124 0.876 30 H 0.074 0.926 31 H 0.162 0.838 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.081 0.919 35 H 0.115 0.885 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.196 0.804 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -24.697 11.724 -3.923 27.618 hybrid contribution -1.630 -0.366 1.085 1.992 sum -26.326 11.359 -2.838 28.812 Atomic orbital electron populations 1.23218 0.78631 1.04708 1.01085 1.86450 1.20805 1.24495 1.86343 1.20051 0.92297 0.85784 0.93485 1.21737 1.01009 0.91839 1.05766 1.22196 0.95841 0.98326 0.96693 1.22824 0.91385 0.96716 0.99699 1.67991 1.38825 0.97394 1.08152 1.20756 0.88453 0.93001 1.06344 1.17222 0.80813 0.87189 0.78140 1.90813 1.70973 1.27573 1.50436 1.48330 1.04024 1.09362 1.70671 1.22707 0.91346 0.86698 1.01228 1.23610 0.95133 1.00089 1.01139 1.21230 0.87190 0.89378 0.95219 0.90632 1.42707 1.04455 1.55444 1.35479 1.19052 0.80694 1.24208 1.13440 0.88984 1.24648 0.95175 0.99959 0.99065 1.69697 1.02541 1.44721 1.41020 0.86592 0.78341 0.80885 0.82994 1.20951 1.21706 1.20280 1.21980 0.89812 0.87312 0.98895 0.90854 1.22057 1.02527 1.00111 0.96642 0.92552 0.87623 0.92561 0.83750 0.84072 0.81727 0.91911 0.88468 0.91052 0.90301 0.80433 0.93014 0.92849 0.91115 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.27 -3.48 8.56 -40.60 -0.35 -3.83 16 3 C 0.13 1.65 6.71 -38.56 -0.26 1.39 16 4 C -0.18 -1.45 9.13 -39.14 -0.36 -1.81 16 5 C -0.11 -0.76 10.10 -39.36 -0.40 -1.16 16 6 C 0.05 0.47 11.17 -17.55 -0.20 0.27 16 7 N -0.41 -5.07 6.58 -9.71 -0.06 -5.14 16 8 C 0.05 0.77 6.73 -82.88 -0.56 0.21 16 9 C 0.58 10.10 7.62 -12.34 -0.09 10.00 16 10 O -0.52 -10.35 14.16 -16.64 -0.24 -10.58 16 11 N -0.59 -10.01 3.06 -163.98 -0.50 -10.52 16 12 C 0.10 1.54 5.96 -2.41 -0.01 1.53 16 13 C -0.16 -2.71 6.79 -24.47 -0.17 -2.88 16 14 C 0.18 3.53 3.13 -66.10 -0.21 3.32 16 15 H 0.08 1.49 7.80 -51.93 -0.41 1.09 16 16 N -0.74 -17.48 5.03 -51.65 -0.26 -17.74 16 17 C -0.24 -6.79 10.44 -15.06 -0.16 -6.95 16 18 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 21 Si 0.88 22.30 27.74 -169.99 -4.71 17.59 16 22 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.67 6.52 56.52 0.37 -6.31 16 25 C 0.12 2.26 3.20 -66.95 -0.21 2.04 16 26 H 0.07 1.45 7.72 -51.93 -0.40 1.05 16 27 C -0.16 -2.67 9.11 37.16 0.34 -2.33 16 28 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 29 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.30 7.70 -51.93 -0.40 -0.10 16 31 H 0.14 0.75 6.46 -52.49 -0.34 0.41 16 32 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.17 0.91 8.06 -52.49 -0.42 0.49 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.37 5.86 -51.93 -0.30 1.06 16 36 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 37 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 38 H 0.36 8.60 5.43 -40.82 -0.22 8.38 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.11 6.87 -51.93 -0.36 0.76 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -34.80 342.14 -7.38 -42.18 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -5.80 Total: 6.38 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.38 Total: 4.88 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: -0.05 Total: -61.77 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: -0.58 Total: -14.41 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -34.80 -7.38 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987411607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.163 kcal (2) G-P(sol) polarization free energy of solvation -34.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds