Wall clock time and date at job start Fri Apr 10 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35649 * 116.99625 * 2 1 4 4 C 1.39344 * 120.54019 * 359.97438 * 3 2 1 5 5 C 1.38308 * 118.43652 * 179.77485 * 4 3 2 6 6 C 1.38766 * 119.44321 * 0.49188 * 5 4 3 7 7 N 1.31378 * 121.06599 * 359.49134 * 6 5 4 8 8 C 1.32854 * 121.69879 * 0.25464 * 7 6 5 9 9 C 1.47833 * 119.78393 * 180.02562 * 8 7 6 10 10 O 1.21563 * 119.99911 * 180.02562 * 9 8 7 11 11 N 1.34773 * 120.00116 * 0.02562 * 9 8 7 12 12 C 1.47426 * 125.64883 * 359.69385 * 11 9 8 13 13 C 1.55125 * 104.72251 * 155.81423 * 12 11 9 14 14 C 1.55154 * 101.48878 * 37.29678 * 13 12 11 15 15 H 1.09002 * 110.72408 * 82.69121 * 14 13 12 16 16 N 1.46497 * 110.87333 * 205.90013 * 14 13 12 17 17 C 1.36941 * 119.99631 * 268.60694 * 16 14 13 18 18 H 1.07999 * 120.00198 * 359.97438 * 17 16 14 19 19 C 1.38814 * 119.99907 * 180.02562 * 17 16 14 20 20 N 1.31620 * 119.99994 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99866 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.47025 * 90.00139 * 21 19 17 23 23 H 1.48497 * 109.47039 * 210.00178 * 21 19 17 24 24 H 1.48497 * 109.47090 * 330.00327 * 21 19 17 25 25 C 1.47018 * 125.64876 * 179.97438 * 11 9 8 26 26 H 1.09001 * 109.88733 * 300.44562 * 25 11 9 27 27 C 1.53000 * 109.88309 * 61.45634 * 25 11 9 28 28 H 1.08997 * 109.46818 * 60.00504 * 1 2 3 29 29 H 1.09006 * 109.46706 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47341 * 299.99691 * 1 2 3 31 31 H 1.07994 * 120.78402 * 0.02562 * 4 3 2 32 32 H 1.07995 * 120.27378 * 180.23716 * 5 4 3 33 33 H 1.08002 * 119.46836 * 179.77550 * 6 5 4 34 34 H 1.08999 * 110.36646 * 274.74917 * 12 11 9 35 35 H 1.09006 * 110.36641 * 37.06180 * 12 11 9 36 36 H 1.08997 * 111.19546 * 279.18815 * 13 12 11 37 37 H 1.09000 * 110.93836 * 155.28949 * 13 12 11 38 38 H 0.96998 * 120.00011 * 88.60964 * 16 14 13 39 39 H 0.96999 * 119.99844 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.47088 * 58.53963 * 27 25 11 41 41 H 1.08997 * 109.47462 * 178.54623 * 27 25 11 42 42 H 1.09005 * 109.46765 * 298.54649 * 27 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0005 5 6 1.9695 3.5929 0.0043 6 6 3.3571 3.6012 -0.0009 7 7 4.0418 2.4800 -0.0004 8 6 3.4410 1.2951 0.0002 9 6 4.2532 0.0598 0.0014 10 8 3.7074 -1.0264 0.0014 11 7 5.5986 0.1380 0.0025 12 6 6.3869 1.3838 -0.0038 13 6 7.7536 0.9887 0.6147 14 6 7.9570 -0.4344 0.0311 15 1 8.3707 -0.3828 -0.9761 16 7 8.8180 -1.2378 0.9025 17 6 10.1721 -1.2560 0.6989 18 1 10.6052 -0.6784 -0.1044 19 6 10.9879 -2.0176 1.5242 20 7 12.2894 -2.0347 1.3288 21 14 10.2388 -3.0171 2.9132 22 1 9.8951 -4.3740 2.4172 23 1 11.2164 -3.1295 4.0253 24 1 9.0093 -2.3424 3.4013 25 6 6.5233 -1.0050 0.0043 26 1 6.3520 -1.6191 0.8883 27 6 6.3172 -1.8430 -1.2591 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.2174 2.3527 -0.0005 32 1 1.4193 4.5222 0.0079 33 1 3.8828 4.5447 -0.0009 34 1 6.5194 1.7437 -1.0241 35 1 5.9000 2.1440 0.6071 36 1 7.7002 0.9607 1.7030 37 1 8.5417 1.6639 0.2816 38 1 8.4290 -1.7568 1.6237 39 1 12.8596 -2.5666 1.9058 40 1 6.4824 -1.2209 -2.1388 41 1 7.0232 -2.6734 -1.2635 42 1 5.2989 -2.2317 -1.2751 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000987411607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:31:50 Heat of formation + Delta-G solvation = -21.615445 kcal Electronic energy + Delta-G solvation = -25323.495009 eV Core-core repulsion = 21690.323770 eV Total energy + Delta-G solvation = -3633.171239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.03963 -40.74218 -39.17073 -38.67509 -36.01092 -33.89499 -33.18361 -32.25089 -31.82427 -30.95895 -28.33138 -26.90863 -25.94521 -24.53655 -23.77337 -23.47868 -21.85506 -20.84489 -19.54758 -19.01922 -18.49777 -17.88234 -17.49135 -16.95986 -16.53736 -16.31219 -16.03569 -15.70456 -15.29290 -15.18202 -14.82574 -14.68718 -14.52615 -14.33947 -14.15655 -13.69797 -13.45986 -13.37258 -13.27787 -13.02895 -12.68293 -12.55913 -12.41937 -12.40801 -12.12839 -12.05883 -11.82001 -11.59733 -11.13921 -10.99375 -10.80572 -10.38386 -9.74560 -9.40079 -9.31241 -8.02202 -5.36048 -0.34877 0.24099 1.38348 1.39791 1.46339 1.76073 1.86996 2.21100 2.47709 2.82899 3.11932 3.28861 3.52195 3.57007 3.67233 3.77457 3.94293 4.03028 4.12890 4.19748 4.28941 4.34761 4.35822 4.39774 4.44355 4.53212 4.67750 4.69542 4.84472 4.89573 5.01972 5.03537 5.08070 5.20571 5.23835 5.36582 5.42669 5.52457 5.77556 6.21554 6.22120 6.52222 6.75518 7.05002 7.16100 7.80080 7.99045 9.18858 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.024189 B = 0.003533 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.284064 B = 7922.739318 C = 8494.784678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.311 6.311 3 C 0.122 3.878 4 C -0.170 4.170 5 C -0.086 4.086 6 C 0.052 3.948 7 N -0.433 5.433 8 C 0.008 3.992 9 C 0.573 3.427 10 O -0.560 6.560 11 N -0.596 5.596 12 C 0.117 3.883 13 C -0.150 4.150 14 C 0.175 3.825 15 H 0.073 0.927 16 N -0.743 5.743 17 C -0.225 4.225 18 H 0.067 0.933 19 C -0.057 4.057 20 N -0.980 5.980 21 Si 0.946 3.054 22 H -0.280 1.280 23 H -0.294 1.294 24 H -0.260 1.260 25 C 0.129 3.871 26 H 0.055 0.945 27 C -0.145 4.145 28 H 0.077 0.923 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.179 0.821 32 H 0.189 0.811 33 H 0.198 0.802 34 H 0.076 0.924 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.363 0.637 39 H 0.258 0.742 40 H 0.063 0.937 41 H 0.065 0.935 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.873 15.299 -3.647 32.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.222 6.222 3 C 0.071 3.929 4 C -0.197 4.197 5 C -0.106 4.106 6 C -0.110 4.110 7 N -0.145 5.145 8 C -0.128 4.128 9 C 0.362 3.638 10 O -0.439 6.439 11 N -0.328 5.328 12 C -0.005 4.005 13 C -0.191 4.191 14 C 0.066 3.934 15 H 0.091 0.909 16 N -0.385 5.385 17 C -0.356 4.356 18 H 0.085 0.915 19 C -0.248 4.248 20 N -0.630 5.630 21 Si 0.774 3.226 22 H -0.207 1.207 23 H -0.220 1.220 24 H -0.185 1.185 25 C 0.024 3.976 26 H 0.073 0.927 27 C -0.204 4.204 28 H 0.095 0.905 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.206 0.794 33 H 0.215 0.785 34 H 0.094 0.906 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.196 0.804 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -28.047 14.489 -3.748 31.790 hybrid contribution -0.757 -1.042 0.936 1.592 sum -28.804 13.447 -2.812 31.913 Atomic orbital electron populations 1.23506 0.76180 1.05734 1.02988 1.86389 1.23561 1.25692 1.86532 1.20262 0.91943 0.86957 0.93729 1.22165 1.02552 0.90699 1.04243 1.22742 0.95308 0.99596 0.92938 1.23517 0.92727 0.96572 0.98186 1.67810 1.39928 0.97670 1.09123 1.20292 0.89107 0.92393 1.11014 1.17857 0.80725 0.88260 0.76935 1.90766 1.71596 1.29371 1.52129 1.48384 1.04194 1.09207 1.71041 1.22697 0.89533 0.86208 1.02044 1.23472 0.96892 0.98258 1.00490 1.21376 0.87179 0.90340 0.94493 0.90899 1.42687 1.03359 1.56260 1.36216 1.19014 0.82411 1.22350 1.11798 0.91516 1.25357 0.95534 1.01888 1.02053 1.69853 1.04090 1.46467 1.42624 0.85550 0.77943 0.79351 0.79777 1.20679 1.22028 1.18453 1.21734 0.89432 0.87892 0.98520 0.92737 1.21955 1.01808 0.99939 0.96660 0.90472 0.87296 0.90613 0.80397 0.79412 0.78486 0.90591 0.86991 0.92047 0.89591 0.80381 0.93307 0.91802 0.91582 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.24 16 2 O -0.31 -7.86 8.56 -68.65 -0.59 -8.45 16 3 C 0.12 2.81 6.71 22.93 0.15 2.96 16 4 C -0.17 -2.11 9.13 22.55 0.21 -1.91 16 5 C -0.09 -0.73 10.10 22.41 0.23 -0.51 16 6 C 0.05 0.68 11.17 84.89 0.95 1.63 16 7 N -0.43 -9.76 6.58 -184.63 -1.22 -10.97 16 8 C 0.01 0.22 6.73 41.93 0.28 0.50 16 9 C 0.57 20.33 7.62 86.78 0.66 21.00 16 10 O -0.56 -23.10 14.16 17.07 0.24 -22.86 16 11 N -0.60 -20.29 3.06 -790.99 -2.42 -22.71 16 12 C 0.12 3.39 5.96 86.93 0.52 3.91 16 13 C -0.15 -5.07 6.79 32.06 0.22 -4.85 16 14 C 0.18 6.88 3.13 46.18 0.14 7.03 16 15 H 0.07 2.91 7.80 -2.39 -0.02 2.89 16 16 N -0.74 -35.41 5.03 -317.32 -1.60 -37.01 16 17 C -0.22 -12.74 10.44 84.03 0.88 -11.86 16 18 H 0.07 4.06 8.06 -2.91 -0.02 4.04 16 19 C -0.06 -3.35 5.50 84.86 0.47 -2.88 16 20 N -0.98 -62.82 13.97 21.65 0.30 -62.52 16 21 Si 0.95 46.70 27.74 68.60 1.90 48.60 16 22 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 23 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 24 H -0.26 -11.92 6.52 99.48 0.65 -11.27 16 25 C 0.13 4.78 3.20 45.34 0.15 4.93 16 26 H 0.05 2.22 7.72 -2.39 -0.02 2.20 16 27 C -0.15 -5.10 9.11 71.98 0.66 -4.45 16 28 H 0.08 0.60 7.70 -2.39 -0.02 0.58 16 29 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.08 0.61 7.70 -2.39 -0.02 0.59 16 31 H 0.18 0.90 6.46 -2.91 -0.02 0.89 16 32 H 0.19 -0.11 8.06 -2.91 -0.02 -0.13 16 33 H 0.20 1.17 8.06 -2.91 -0.02 1.15 16 34 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.11 2.97 5.86 -2.38 -0.01 2.96 16 36 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 38 H 0.36 17.19 5.43 -92.71 -0.50 16.69 16 39 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.06 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 42 H 0.05 2.01 6.87 -2.38 -0.02 1.99 16 Total: -1.00 -79.64 342.14 3.72 -75.92 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.48 Total: 23.26 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.62 Total: 16.74 kcal Atomic # 7 Polarization: -128.27 SS G_CDS: -4.93 Total: -133.21 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -0.35 Total: -31.31 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.90 Total: 48.60 kcal Total: -79.64 3.72 -75.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000987411607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.309 kcal (2) G-P(sol) polarization free energy of solvation -79.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds