Wall clock time and date at job start Fri Apr 10 2020 21:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35425 * 116.99974 * 2 1 4 4 N 1.32236 * 119.79999 * 0.02562 * 3 2 1 5 5 C 1.31877 * 121.80033 * 179.97438 * 4 3 2 6 6 C 1.38349 * 121.18889 * 0.02562 * 5 4 3 7 7 C 1.38339 * 119.45828 * 359.73841 * 6 5 4 8 8 C 1.39983 * 118.34769 * 0.50075 * 7 6 5 9 9 C 1.47523 * 120.60155 * 179.78341 * 8 7 6 10 10 O 1.21588 * 120.00432 * 179.72364 * 9 8 7 11 11 N 1.34776 * 119.99566 * 359.71435 * 9 8 7 12 12 C 1.46505 * 120.00014 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.52035 * 34.91998 * 12 11 9 14 14 C 1.53037 * 109.49936 * 155.00172 * 12 11 9 15 15 C 1.53040 * 109.53016 * 181.32556 * 14 12 11 16 16 C 1.53195 * 109.31051 * 298.61616 * 15 14 12 17 17 N 1.46926 * 108.76708 * 54.65385 * 16 15 14 18 18 C 1.36931 * 120.63289 * 126.40565 * 17 16 15 19 19 H 1.08001 * 119.99988 * 207.66278 * 18 17 16 20 20 C 1.38809 * 119.99891 * 27.66355 * 18 17 16 21 21 N 1.31618 * 120.00290 * 17.36942 * 20 18 17 22 22 Si 1.86802 * 120.00128 * 197.36428 * 20 18 17 23 23 H 1.48497 * 109.46839 * 60.00142 * 22 20 18 24 24 H 1.48500 * 109.47277 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47172 * 300.00420 * 22 20 18 26 26 C 1.46935 * 118.73705 * 306.38707 * 17 16 15 27 27 H 1.09006 * 109.46614 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47303 * 300.00440 * 1 2 3 29 29 H 1.08995 * 109.47247 * 60.00731 * 1 2 3 30 30 H 1.08003 * 119.40785 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.27580 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.82829 * 180.25815 * 7 6 5 33 33 H 0.97001 * 120.00289 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.45832 * 301.33828 * 14 12 11 35 35 H 1.09001 * 109.45903 * 61.30503 * 14 12 11 36 36 H 1.08997 * 109.49738 * 58.57791 * 15 14 12 37 37 H 1.08997 * 109.50268 * 178.67820 * 15 14 12 38 38 H 1.09005 * 109.59622 * 294.87072 * 16 15 14 39 39 H 1.09001 * 109.58746 * 174.43441 * 16 15 14 40 40 H 0.96998 * 120.00359 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.58209 * 293.81576 * 26 17 16 42 42 H 1.08997 * 109.58595 * 173.40093 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8770 3.5084 0.0010 6 6 3.2525 3.6575 0.0005 7 6 4.0587 2.5334 0.0050 8 6 3.4450 1.2753 -0.0009 9 6 4.2570 0.0436 -0.0014 10 8 3.7126 -1.0436 -0.0014 11 7 5.6024 0.1235 -0.0019 12 6 6.4089 -1.0996 -0.0029 13 1 5.9058 -1.8670 -0.5912 14 6 7.7813 -0.8060 -0.6130 15 6 8.6125 -2.0906 -0.6447 16 6 8.8181 -2.5964 0.7867 17 7 7.5050 -2.7433 1.4293 18 6 7.1418 -3.9282 2.0116 19 1 6.0987 -4.2004 2.0768 20 6 8.1143 -4.7794 2.5181 21 7 9.3269 -4.3261 2.7553 22 14 7.7019 -6.5683 2.8632 23 1 7.2678 -7.2277 1.6054 24 1 8.9039 -7.2598 3.3946 25 1 6.6064 -6.6398 3.8632 26 6 6.5891 -1.5943 1.4356 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.2484 4.3866 0.0010 31 1 3.6932 4.6435 0.0014 32 1 5.1349 2.6241 0.0089 33 1 6.0368 0.9908 -0.0016 34 1 7.6545 -0.4304 -1.6283 35 1 8.2939 -0.0565 -0.0099 36 1 8.0886 -2.8486 -1.2268 37 1 9.5812 -1.8861 -1.1006 38 1 9.4199 -1.8792 1.3450 39 1 9.3238 -3.5618 0.7640 40 1 10.0064 -4.9208 3.1096 41 1 7.0093 -0.7955 2.0468 42 1 5.6242 -1.8984 1.8412 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008378708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:58 Heat of formation + Delta-G solvation = -9.723103 kcal Electronic energy + Delta-G solvation = -25112.864692 eV Core-core repulsion = 21480.209144 eV Total energy + Delta-G solvation = -3632.655548 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.02258 -39.20786 -38.01687 -37.20190 -34.30221 -33.07899 -32.13405 -31.04215 -30.42333 -28.62628 -27.31341 -25.24961 -24.78364 -23.16191 -22.17234 -21.93676 -20.29987 -19.46364 -18.59598 -17.40146 -17.25846 -16.67985 -16.18483 -15.44207 -15.27584 -14.79824 -14.63275 -14.40553 -14.17087 -13.93829 -13.57825 -13.39884 -13.18205 -13.01157 -12.78816 -12.36962 -12.32867 -11.86661 -11.78934 -11.36759 -11.05599 -10.86038 -10.74860 -10.25431 -10.23072 -10.19763 -10.16615 -9.86776 -9.85892 -9.59614 -9.40852 -8.83103 -8.67353 -8.34920 -6.63488 -5.74532 -3.16230 0.50491 0.99688 2.93283 2.97655 3.31027 3.44576 3.48621 3.52376 3.73869 4.03564 4.46185 4.55201 4.61340 4.77288 4.93219 5.17060 5.19843 5.20411 5.34748 5.42494 5.50719 5.55739 5.57585 5.65759 5.74157 5.77783 6.05438 6.11923 6.18957 6.26924 6.55579 6.64201 6.71185 6.73034 6.87877 7.03495 7.08592 7.38938 7.50706 7.67555 7.78987 7.87274 8.47129 8.53359 9.26380 9.88705 10.44312 11.34264 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.003542 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.068781 B = 7904.267155 C = 8883.350949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.268 6.268 3 C 0.370 3.630 4 N -0.547 5.547 5 C 0.161 3.839 6 C -0.222 4.222 7 C -0.010 4.010 8 C -0.203 4.203 9 C 0.558 3.442 10 O -0.510 6.510 11 N -0.720 5.720 12 C 0.128 3.872 13 H 0.087 0.913 14 C -0.114 4.114 15 C -0.140 4.140 16 C 0.167 3.833 17 N -0.588 5.588 18 C -0.250 4.250 19 H 0.067 0.933 20 C 0.002 3.998 21 N -0.905 5.905 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.142 3.858 27 H 0.099 0.901 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.163 0.837 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.391 0.609 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.019 0.981 39 H 0.089 0.911 40 H 0.254 0.746 41 H 0.017 0.983 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.828 18.167 -7.971 22.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.171 6.171 3 C 0.190 3.810 4 N -0.272 5.272 5 C 0.004 3.996 6 C -0.243 4.243 7 C -0.036 4.036 8 C -0.209 4.209 9 C 0.343 3.657 10 O -0.385 6.385 11 N -0.372 5.372 12 C 0.023 3.977 13 H 0.105 0.895 14 C -0.153 4.153 15 C -0.179 4.179 16 C 0.042 3.958 17 N -0.310 5.310 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.550 5.550 22 Si 0.733 3.267 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.208 1.208 26 C 0.015 3.985 27 H 0.117 0.883 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.180 0.820 31 H 0.161 0.839 32 H 0.162 0.838 33 H 0.225 0.775 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.107 0.893 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -11.892 16.837 -7.879 22.067 hybrid contribution 0.734 -0.075 0.244 0.777 sum -11.158 16.762 -7.635 21.535 Atomic orbital electron populations 1.22958 0.77605 1.03395 1.02088 1.86577 1.22251 1.22870 1.85421 1.19908 0.88241 0.85110 0.87720 1.67474 1.40422 0.98696 1.20567 1.22625 0.93078 0.93732 0.90152 1.21910 0.94761 0.99856 1.07726 1.21670 1.00722 0.90556 0.90636 1.20191 0.91727 0.95331 1.13679 1.17734 0.82245 0.88142 0.77593 1.90866 1.71466 1.28193 1.47997 1.46020 1.05568 1.10104 1.75490 1.21750 0.90222 0.85310 1.00465 0.89464 1.21680 0.95145 0.99207 0.99239 1.22182 0.98052 0.95957 1.01753 1.20845 0.87103 1.00965 0.86920 1.43997 1.14273 1.08785 1.63977 1.19202 0.92802 0.94277 1.31710 0.91566 1.25007 0.96629 0.99285 0.98672 1.70029 1.03454 1.34185 1.47304 0.86351 0.77090 0.85089 0.78180 1.20967 1.21667 1.20849 1.21189 0.94959 0.90498 0.91902 0.88293 0.92294 0.92369 0.82002 0.83942 0.83758 0.77539 0.93092 0.92270 0.92387 0.92725 0.96339 0.89254 0.93646 0.96535 0.92335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.38 101.05 1.05 1.43 16 2 O -0.27 -4.17 8.58 -39.74 -0.34 -4.51 16 3 C 0.37 5.27 7.51 -16.61 -0.12 5.14 16 4 N -0.55 -6.45 9.21 -12.98 -0.12 -6.57 16 5 C 0.16 1.35 11.17 -17.49 -0.20 1.16 16 6 C -0.22 -1.65 10.09 -39.50 -0.40 -2.04 16 7 C -0.01 -0.09 9.64 -38.89 -0.37 -0.47 16 8 C -0.20 -2.76 5.90 -104.69 -0.62 -3.38 16 9 C 0.56 9.37 7.74 -12.48 -0.10 9.27 16 10 O -0.51 -10.85 14.86 -16.48 -0.24 -11.09 16 11 N -0.72 -10.72 5.03 -54.74 -0.28 -11.00 16 12 C 0.13 2.34 2.60 -67.81 -0.18 2.17 16 13 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 14 C -0.11 -1.85 5.35 -26.69 -0.14 -1.99 16 15 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 16 C 0.17 3.98 5.31 -3.71 -0.02 3.97 16 17 N -0.59 -15.20 2.99 -172.31 -0.52 -15.71 16 18 C -0.25 -7.17 9.59 -15.06 -0.14 -7.31 16 19 H 0.07 1.91 7.89 -52.49 -0.41 1.50 16 20 C 0.00 0.06 4.91 -17.43 -0.09 -0.02 16 21 N -0.91 -26.56 11.19 55.49 0.62 -25.94 16 22 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 23 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 25 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.14 3.18 6.09 -3.71 -0.02 3.15 16 27 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.57 8.10 -51.93 -0.42 0.15 16 30 H 0.16 0.78 8.06 -52.48 -0.42 0.35 16 31 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 32 H 0.14 0.94 6.52 -52.49 -0.34 0.60 16 33 H 0.39 4.33 6.70 -40.82 -0.27 4.06 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 39 H 0.09 2.38 6.04 -51.93 -0.31 2.07 16 40 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 1.42 7.93 -51.93 -0.41 1.00 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -34.93 345.40 -8.14 -43.08 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.93 Total: 0.92 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -1.51 Total: 8.28 kcal Atomic # 7 Polarization: -58.94 SS G_CDS: -0.29 Total: -59.23 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.59 Total: -15.60 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.93 -8.14 -43.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008378708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.353 kcal (2) G-P(sol) polarization free energy of solvation -34.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds