Wall clock time and date at job start Fri Apr 10 2020 21:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35425 * 116.99974 * 2 1 4 4 N 1.32236 * 119.79999 * 0.02562 * 3 2 1 5 5 C 1.31877 * 121.80033 * 179.97438 * 4 3 2 6 6 C 1.38349 * 121.18889 * 0.02562 * 5 4 3 7 7 C 1.38339 * 119.45828 * 359.73841 * 6 5 4 8 8 C 1.39983 * 118.34769 * 0.50075 * 7 6 5 9 9 C 1.47523 * 120.60155 * 179.78341 * 8 7 6 10 10 O 1.21588 * 120.00432 * 179.72364 * 9 8 7 11 11 N 1.34776 * 119.99566 * 359.71435 * 9 8 7 12 12 C 1.46505 * 120.00014 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.52035 * 34.91998 * 12 11 9 14 14 C 1.53037 * 109.49936 * 155.00172 * 12 11 9 15 15 C 1.53040 * 109.53016 * 181.32556 * 14 12 11 16 16 C 1.53195 * 109.31051 * 298.61616 * 15 14 12 17 17 N 1.46926 * 108.76708 * 54.65385 * 16 15 14 18 18 C 1.36931 * 120.63289 * 126.40565 * 17 16 15 19 19 H 1.08001 * 119.99988 * 207.66278 * 18 17 16 20 20 C 1.38809 * 119.99891 * 27.66355 * 18 17 16 21 21 N 1.31618 * 120.00290 * 17.36942 * 20 18 17 22 22 Si 1.86802 * 120.00128 * 197.36428 * 20 18 17 23 23 H 1.48497 * 109.46839 * 60.00142 * 22 20 18 24 24 H 1.48500 * 109.47277 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47172 * 300.00420 * 22 20 18 26 26 C 1.46935 * 118.73705 * 306.38707 * 17 16 15 27 27 H 1.09006 * 109.46614 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47303 * 300.00440 * 1 2 3 29 29 H 1.08995 * 109.47247 * 60.00731 * 1 2 3 30 30 H 1.08003 * 119.40785 * 179.97438 * 5 4 3 31 31 H 1.08004 * 120.27580 * 180.02562 * 6 5 4 32 32 H 1.08001 * 120.82829 * 180.25815 * 7 6 5 33 33 H 0.97001 * 120.00289 * 0.02562 * 11 9 8 34 34 H 1.08999 * 109.45832 * 301.33828 * 14 12 11 35 35 H 1.09001 * 109.45903 * 61.30503 * 14 12 11 36 36 H 1.08997 * 109.49738 * 58.57791 * 15 14 12 37 37 H 1.08997 * 109.50268 * 178.67820 * 15 14 12 38 38 H 1.09005 * 109.59622 * 294.87072 * 16 15 14 39 39 H 1.09001 * 109.58746 * 174.43441 * 16 15 14 40 40 H 0.96998 * 120.00359 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.58209 * 293.81576 * 26 17 16 42 42 H 1.08997 * 109.58595 * 173.40093 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8770 3.5084 0.0010 6 6 3.2525 3.6575 0.0005 7 6 4.0587 2.5334 0.0050 8 6 3.4450 1.2753 -0.0009 9 6 4.2570 0.0436 -0.0014 10 8 3.7126 -1.0436 -0.0014 11 7 5.6024 0.1235 -0.0019 12 6 6.4089 -1.0996 -0.0029 13 1 5.9058 -1.8670 -0.5912 14 6 7.7813 -0.8060 -0.6130 15 6 8.6125 -2.0906 -0.6447 16 6 8.8181 -2.5964 0.7867 17 7 7.5050 -2.7433 1.4293 18 6 7.1418 -3.9282 2.0116 19 1 6.0987 -4.2004 2.0768 20 6 8.1143 -4.7794 2.5181 21 7 9.3269 -4.3261 2.7553 22 14 7.7019 -6.5683 2.8632 23 1 7.2678 -7.2277 1.6054 24 1 8.9039 -7.2598 3.3946 25 1 6.6064 -6.6398 3.8632 26 6 6.5891 -1.5943 1.4356 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 1.2484 4.3866 0.0010 31 1 3.6932 4.6435 0.0014 32 1 5.1349 2.6241 0.0089 33 1 6.0368 0.9908 -0.0016 34 1 7.6545 -0.4304 -1.6283 35 1 8.2939 -0.0565 -0.0099 36 1 8.0886 -2.8486 -1.2268 37 1 9.5812 -1.8861 -1.1006 38 1 9.4199 -1.8792 1.3450 39 1 9.3238 -3.5618 0.7640 40 1 10.0064 -4.9208 3.1096 41 1 7.0093 -0.7955 2.0468 42 1 5.6242 -1.8984 1.8412 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008378708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:57 Heat of formation + Delta-G solvation = -35.409214 kcal Electronic energy + Delta-G solvation = -25113.978526 eV Core-core repulsion = 21480.209144 eV Total energy + Delta-G solvation = -3633.769382 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.94669 -40.52094 -38.93169 -38.81524 -35.94599 -34.41707 -33.46343 -32.34465 -31.86978 -30.18014 -28.19207 -27.26619 -25.76281 -24.07673 -23.89029 -23.41006 -21.61518 -21.08494 -19.51909 -18.73443 -18.51238 -18.11621 -17.14863 -17.00917 -16.56308 -16.12449 -15.94863 -15.76544 -15.45421 -15.20440 -15.07672 -14.81697 -14.31133 -14.27893 -14.11643 -13.92512 -13.52403 -13.40001 -13.03528 -12.74583 -12.71803 -12.57720 -12.21301 -12.14913 -11.97636 -11.75281 -11.57633 -11.31573 -11.14403 -11.02567 -10.62987 -10.59975 -10.13582 -9.54388 -8.70111 -7.91726 -5.36871 -0.32774 0.25110 1.43233 1.45593 1.53204 1.88841 2.05487 2.12665 2.49798 2.82118 3.22020 3.27237 3.65379 3.76955 3.79600 3.93170 4.00148 4.12014 4.23651 4.28261 4.36721 4.37671 4.47535 4.50815 4.58377 4.68273 4.81492 4.90709 4.92883 5.01917 5.09234 5.13178 5.16927 5.27903 5.43368 5.47275 5.56259 5.62375 5.76630 6.21845 6.35759 6.57370 6.76559 7.11981 7.29708 7.81695 8.31231 9.13712 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.003542 C = 0.003151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.068781 B = 7904.267155 C = 8883.350949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.307 6.307 3 C 0.344 3.656 4 N -0.561 5.561 5 C 0.161 3.839 6 C -0.203 4.203 7 C -0.002 4.002 8 C -0.234 4.234 9 C 0.555 3.445 10 O -0.569 6.569 11 N -0.703 5.703 12 C 0.144 3.856 13 H 0.054 0.946 14 C -0.103 4.103 15 C -0.130 4.130 16 C 0.171 3.829 17 N -0.607 5.607 18 C -0.272 4.272 19 H 0.050 0.950 20 C -0.041 4.041 21 N -0.928 5.928 22 Si 0.965 3.035 23 H -0.280 1.280 24 H -0.284 1.284 25 H -0.280 1.280 26 C 0.145 3.855 27 H 0.107 0.893 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.203 0.797 31 H 0.189 0.811 32 H 0.176 0.824 33 H 0.414 0.586 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.087 0.913 38 H 0.007 0.993 39 H 0.054 0.946 40 H 0.253 0.747 41 H 0.023 0.977 42 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.432 21.659 -9.063 25.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.212 6.212 3 C 0.165 3.835 4 N -0.286 5.286 5 C 0.005 3.995 6 C -0.223 4.223 7 C -0.028 4.028 8 C -0.240 4.240 9 C 0.342 3.658 10 O -0.448 6.448 11 N -0.356 5.356 12 C 0.037 3.963 13 H 0.072 0.928 14 C -0.141 4.141 15 C -0.170 4.170 16 C 0.046 3.954 17 N -0.331 5.331 18 C -0.402 4.402 19 H 0.068 0.932 20 C -0.237 4.237 21 N -0.573 5.573 22 Si 0.792 3.208 23 H -0.206 1.206 24 H -0.210 1.210 25 H -0.205 1.205 26 C 0.018 3.982 27 H 0.125 0.875 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.220 0.780 31 H 0.206 0.794 32 H 0.193 0.807 33 H 0.252 0.748 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.106 0.894 38 H 0.025 0.975 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -11.485 20.401 -8.987 25.078 hybrid contribution 0.542 -0.997 0.623 1.295 sum -10.943 19.405 -8.363 23.796 Atomic orbital electron populations 1.23088 0.76147 1.04203 1.02664 1.86519 1.24085 1.24662 1.85972 1.20158 0.88768 0.85415 0.89165 1.67532 1.40653 0.99185 1.21183 1.23487 0.94597 0.93590 0.87825 1.22417 0.94068 1.01082 1.04691 1.22079 1.02501 0.89199 0.89007 1.20061 0.91315 0.95389 1.17261 1.18333 0.82650 0.88698 0.76079 1.90831 1.72556 1.30719 1.50685 1.45709 1.04963 1.10034 1.74861 1.21250 0.91961 0.86069 0.97001 0.92770 1.21615 0.92677 0.98230 1.01572 1.22025 1.00228 0.96895 0.97829 1.20739 0.85724 0.99096 0.89815 1.44223 1.15440 1.08981 1.64489 1.19357 0.92381 0.96095 1.32378 0.93229 1.25690 0.96538 1.02819 0.98682 1.70151 1.04053 1.35249 1.47846 0.85394 0.76969 0.80412 0.77999 1.20598 1.20962 1.20550 1.21209 0.92597 0.89609 0.94751 0.87480 0.91839 0.91514 0.78014 0.79390 0.80690 0.74812 0.89309 0.90125 0.93633 0.89444 0.97451 0.92714 0.93768 0.95870 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.38 113.37 1.18 1.95 16 2 O -0.31 -10.17 8.58 -66.39 -0.57 -10.74 16 3 C 0.34 9.87 7.51 85.13 0.64 10.51 16 4 N -0.56 -12.41 9.21 -308.00 -2.84 -15.24 16 5 C 0.16 2.08 11.17 84.71 0.95 3.03 16 6 C -0.20 -1.98 10.09 22.32 0.23 -1.76 16 7 C 0.00 -0.03 9.64 22.72 0.22 0.19 16 8 C -0.23 -6.21 5.90 -19.91 -0.12 -6.33 16 9 C 0.55 19.02 7.74 86.69 0.67 19.70 16 10 O -0.57 -25.86 14.86 16.82 0.25 -25.61 16 11 N -0.70 -20.21 5.03 -445.35 -2.24 -22.45 16 12 C 0.14 5.26 2.60 45.07 0.12 5.38 16 13 H 0.05 2.38 7.58 -2.39 -0.02 2.36 16 14 C -0.10 -3.04 5.35 30.62 0.16 -2.88 16 15 C -0.13 -4.70 6.08 30.67 0.19 -4.52 16 16 C 0.17 8.29 5.31 86.36 0.46 8.75 16 17 N -0.61 -32.58 2.99 -699.08 -2.09 -34.67 16 18 C -0.27 -16.28 9.59 84.03 0.81 -15.48 16 19 H 0.05 3.05 7.89 -2.91 -0.02 3.03 16 20 C -0.04 -2.41 4.91 84.86 0.42 -2.00 16 21 N -0.93 -55.78 11.19 21.65 0.24 -55.54 16 22 Si 0.96 47.18 29.59 68.60 2.03 49.21 16 23 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 24 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 26 C 0.15 6.71 6.09 86.36 0.53 7.24 16 27 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 29 H 0.07 1.35 8.10 -2.39 -0.02 1.33 16 30 H 0.20 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.19 0.20 8.06 -2.91 -0.02 0.18 16 32 H 0.18 1.40 6.52 -2.91 -0.02 1.38 16 33 H 0.41 7.87 6.70 -92.71 -0.62 7.25 16 34 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 37 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 38 H 0.01 0.37 8.14 -2.38 -0.02 0.35 16 39 H 0.05 3.01 6.04 -2.39 -0.01 2.99 16 40 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 41 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.02 1.27 7.93 -2.39 -0.02 1.25 16 Total: -1.00 -83.45 345.40 1.63 -81.82 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 0.41 Total: 9.45 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: 6.43 Total: 23.77 kcal Atomic # 7 Polarization: -120.98 SS G_CDS: -6.93 Total: -127.91 kcal Atomic # 8 Polarization: -36.02 SS G_CDS: -0.32 Total: -36.34 kcal Atomic # 14 Polarization: 47.18 SS G_CDS: 2.03 Total: 49.21 kcal Total: -83.45 1.63 -81.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008378708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.407 kcal (2) G-P(sol) polarization free energy of solvation -83.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds