Wall clock time and date at job start Fri Apr 10 2020 21:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38265 * 119.97054 * 2 1 4 4 C 1.38178 * 120.02356 * 179.97438 * 3 2 1 5 5 C 1.38484 * 119.97313 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02837 * 179.97438 * 5 4 3 7 7 C 1.38445 * 119.94738 * 359.97438 * 5 4 3 8 8 C 1.50698 * 120.00909 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47590 * 279.99982 * 8 7 5 10 10 O 1.21285 * 119.99398 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00631 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00456 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47128 * 269.99867 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72498 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 C 1.46507 * 119.99478 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47219 * 269.99855 * 21 11 9 23 23 C 1.52995 * 117.49959 * 243.62556 * 22 21 11 24 24 C 1.52995 * 117.49819 * 175.00185 * 22 21 11 25 25 C 1.38213 * 119.97556 * 0.28312 * 7 5 4 26 26 H 1.08999 * 109.47094 * 90.00299 * 1 2 3 27 27 H 1.09004 * 109.46681 * 210.00518 * 1 2 3 28 28 H 1.08998 * 109.47100 * 329.99666 * 1 2 3 29 29 H 1.07994 * 119.99153 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.01548 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46800 * 160.00569 * 8 7 5 32 32 H 1.08998 * 109.47396 * 40.00419 * 8 7 5 33 33 H 1.09001 * 109.47786 * 150.00139 * 12 11 9 34 34 H 1.08998 * 109.47558 * 30.00002 * 12 11 9 35 35 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 36 36 H 1.08993 * 109.47381 * 30.00157 * 21 11 9 37 37 H 1.09002 * 109.46817 * 150.00395 * 21 11 9 38 38 H 1.09001 * 115.54834 * 29.33239 * 22 21 11 39 39 H 1.09004 * 117.49985 * 359.97438 * 23 22 21 40 40 H 1.09003 * 117.50367 * 145.02057 * 23 22 21 41 41 H 1.09007 * 117.50056 * 214.98124 * 24 22 21 42 42 H 1.09000 * 117.50138 * 0.02562 * 24 22 21 43 43 H 1.08000 * 119.99019 * 179.71953 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5796 1.1990 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6235 0.0000 0.0005 7 6 3.5798 -1.1986 0.0005 8 6 4.3324 -2.5041 0.0011 9 6 4.7977 -2.8165 -1.3978 10 8 4.5434 -2.0537 -2.3058 11 7 5.4962 -3.9434 -1.6399 12 6 5.9489 -4.2467 -2.9997 13 6 4.8917 -5.0490 -3.7139 14 1 3.9747 -5.3074 -3.2054 15 6 5.0932 -5.4487 -5.0179 16 7 6.2077 -5.1294 -5.6388 17 14 3.7825 -6.4426 -5.9034 18 1 2.8438 -5.5211 -6.5924 19 1 4.4267 -7.3317 -6.9031 20 1 3.0353 -7.2650 -4.9182 21 6 5.8027 -4.8650 -0.5431 22 6 7.1403 -4.4770 0.0903 23 6 8.2861 -5.4864 -0.0043 24 6 7.5836 -5.2499 1.3341 25 6 2.1976 -1.1974 -0.0054 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6572 2.1327 -0.0004 30 1 4.1189 2.1347 0.0001 31 1 3.6771 -3.3012 0.3525 32 1 5.1956 -2.4256 0.6620 33 1 6.8734 -4.8223 -2.9551 34 1 6.1258 -3.3166 -3.5398 35 1 6.3493 -5.4102 -6.5565 36 1 5.0153 -4.8101 0.2085 37 1 5.8655 -5.8821 -0.9300 38 1 7.3959 -3.4187 0.0378 39 1 8.0869 -6.4272 -0.5176 40 1 9.2959 -5.0924 -0.1193 41 1 8.1312 -4.7002 2.0997 42 1 6.9225 -6.0351 1.7009 43 1 1.6570 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448909607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:21 Heat of formation + Delta-G solvation = -40.751178 kcal Electronic energy + Delta-G solvation = -25045.284115 eV Core-core repulsion = 21391.363127 eV Total energy + Delta-G solvation = -3653.920988 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.65860 -39.63697 -38.65955 -37.09643 -34.38618 -33.23199 -32.48471 -31.92031 -28.65128 -27.26515 -26.50596 -25.77682 -23.09115 -22.31430 -22.15881 -20.93041 -20.51594 -18.38332 -17.39375 -16.63144 -16.41735 -16.39750 -15.77047 -15.25539 -14.93234 -14.78442 -14.55886 -14.12173 -13.95770 -13.66882 -13.62594 -13.33896 -13.06790 -12.57606 -12.47204 -12.30028 -12.08349 -11.77249 -11.60016 -11.48007 -11.34099 -11.20840 -11.20093 -10.89191 -10.86965 -10.60032 -10.26965 -10.10430 -9.69225 -9.59348 -9.09735 -8.69970 -8.40874 -8.30888 -7.64135 -6.01665 -4.06291 1.24677 1.30528 3.31920 3.37551 3.38852 3.45923 3.56086 3.88227 4.12463 4.44118 4.46727 4.66017 4.77462 4.83961 4.93085 5.09470 5.12177 5.18972 5.22872 5.32288 5.39894 5.47222 5.54143 5.59189 5.64603 5.67734 5.75674 5.78006 5.85891 6.00094 6.04378 6.09356 6.15017 6.25905 6.28826 6.39252 6.49013 6.53690 6.98700 7.12873 7.49572 7.58319 7.94956 8.26714 8.44820 8.92942 9.12745 9.58545 11.06414 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004915 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.683717 B = 5695.529206 C = 7388.029632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.100 4.100 3 C -0.098 4.098 4 C -0.152 4.152 5 C 0.110 3.890 6 F -0.138 7.138 7 C -0.085 4.085 8 C -0.105 4.105 9 C 0.509 3.491 10 O -0.532 6.532 11 N -0.594 5.594 12 C 0.248 3.752 13 C -0.525 4.525 14 H 0.056 0.944 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.142 3.858 22 C -0.168 4.168 23 C -0.174 4.174 24 C -0.181 4.181 25 C -0.082 4.082 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.128 0.872 30 H 0.132 0.868 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.033 0.967 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.069 0.931 37 H 0.084 0.916 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.102 6.386 17.106 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.100 4.100 3 C -0.116 4.116 4 C -0.170 4.170 5 C 0.091 3.909 6 F -0.116 7.116 7 C -0.086 4.086 8 C -0.145 4.145 9 C 0.295 3.705 10 O -0.409 6.409 11 N -0.325 5.325 12 C 0.129 3.871 13 C -0.564 4.564 14 H 0.074 0.926 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.200 1.200 21 C 0.017 3.983 22 C -0.187 4.187 23 C -0.211 4.211 24 C -0.219 4.219 25 C -0.100 4.100 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.146 0.854 30 H 0.150 0.850 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.112 0.888 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.078 6.753 16.406 18.454 hybrid contribution -0.228 -0.618 -0.638 0.917 sum -5.306 6.135 15.768 17.732 Atomic orbital electron populations 1.20757 0.90865 1.02588 1.02545 1.19877 0.96324 0.92887 1.00892 1.20790 0.92985 0.97806 1.00045 1.21038 0.95010 0.96793 1.04207 1.17477 0.76869 0.94059 1.02505 1.91481 1.29021 1.97370 1.93732 1.19435 0.94154 0.93258 1.01736 1.20724 1.01095 0.95055 0.97671 1.20075 0.79138 0.81841 0.89416 1.90693 1.55861 1.48241 1.46107 1.48164 1.53502 1.20273 1.10541 1.19259 0.94839 0.97175 0.75807 1.21433 1.03334 1.33787 0.97836 0.92553 1.24925 0.95676 0.96308 0.97157 1.69938 1.24871 1.46234 1.12276 0.86525 0.81702 0.79871 0.79476 1.20595 1.21158 1.19952 1.21033 0.93440 0.94797 0.89011 1.22911 0.96943 0.97980 1.00917 1.22993 0.97126 1.01083 0.99864 1.22921 1.04252 1.03447 0.91276 1.20775 0.92275 0.98167 0.98763 0.91009 0.91493 0.91635 0.85407 0.84997 0.88153 0.88287 0.94890 0.94016 0.92767 0.91242 0.89746 0.87923 0.88444 0.89173 0.89180 0.88845 0.85235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.01 36.01 0.36 -0.63 16 2 C -0.10 -1.21 5.88 -104.61 -0.62 -1.82 16 3 C -0.10 -1.16 9.70 -39.59 -0.38 -1.54 16 4 C -0.15 -2.03 10.03 -39.51 -0.40 -2.43 16 5 C 0.11 1.77 7.13 -39.41 -0.28 1.49 16 6 F -0.14 -2.38 16.66 2.25 0.04 -2.34 16 7 C -0.08 -1.33 4.43 -104.56 -0.46 -1.80 16 8 C -0.11 -1.65 4.11 -29.04 -0.12 -1.77 16 9 C 0.51 10.87 7.66 -10.99 -0.08 10.79 16 10 O -0.53 -13.89 15.53 5.55 0.09 -13.80 16 11 N -0.59 -12.69 2.46 -175.06 -0.43 -13.12 16 12 C 0.25 6.59 5.16 -5.19 -0.03 6.56 16 13 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 17 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 C 0.14 2.31 5.49 -4.04 -0.02 2.29 16 22 C -0.17 -2.42 5.94 -90.62 -0.54 -2.95 16 23 C -0.17 -2.32 10.18 -26.73 -0.27 -2.59 16 24 C -0.18 -2.05 10.25 -26.73 -0.27 -2.32 16 25 C -0.08 -1.13 9.32 -39.60 -0.37 -1.50 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 28 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 29 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.10 1.30 7.26 -51.93 -0.38 0.92 16 32 H 0.10 1.39 7.84 -51.93 -0.41 0.98 16 33 H 0.03 0.89 8.07 -51.93 -0.42 0.47 16 34 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.07 0.93 6.44 -51.93 -0.33 0.60 16 37 H 0.08 1.44 7.81 -51.93 -0.41 1.03 16 38 H 0.10 1.59 8.14 -51.93 -0.42 1.16 16 39 H 0.10 1.33 8.03 -51.93 -0.42 0.91 16 40 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.13 1.57 8.04 -52.49 -0.42 1.15 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -34.14 368.96 -9.45 -43.59 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -6.51 Total: 1.15 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -3.91 Total: -11.87 kcal Atomic # 7 Polarization: -39.58 SS G_CDS: 0.31 Total: -39.27 kcal Atomic # 8 Polarization: -13.89 SS G_CDS: 0.09 Total: -13.80 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.14 -9.45 -43.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448909607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.837 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds