Wall clock time and date at job start Fri Apr 10 2020 21:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38265 * 119.97054 * 2 1 4 4 C 1.38178 * 120.02356 * 179.97438 * 3 2 1 5 5 C 1.38484 * 119.97313 * 0.02562 * 4 3 2 6 6 F 1.35100 * 120.02837 * 179.97438 * 5 4 3 7 7 C 1.38445 * 119.94738 * 359.97438 * 5 4 3 8 8 C 1.50698 * 120.00909 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47590 * 279.99982 * 8 7 5 10 10 O 1.21285 * 119.99398 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00631 * 180.02562 * 9 8 7 12 12 C 1.46493 * 120.00456 * 180.02562 * 11 9 8 13 13 C 1.50706 * 109.47128 * 269.99867 * 12 11 9 14 14 H 1.08000 * 119.99302 * 359.97438 * 13 12 11 15 15 C 1.37871 * 120.00436 * 179.72498 * 13 12 11 16 16 N 1.31515 * 119.99684 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00405 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47154 * 89.99418 * 17 15 13 19 19 H 1.48493 * 109.47010 * 209.99942 * 17 15 13 20 20 H 1.48502 * 109.46736 * 329.99638 * 17 15 13 21 21 C 1.46507 * 119.99478 * 0.02562 * 11 9 8 22 22 C 1.53002 * 109.47219 * 269.99855 * 21 11 9 23 23 C 1.52995 * 117.49959 * 243.62556 * 22 21 11 24 24 C 1.52995 * 117.49819 * 175.00185 * 22 21 11 25 25 C 1.38213 * 119.97556 * 0.28312 * 7 5 4 26 26 H 1.08999 * 109.47094 * 90.00299 * 1 2 3 27 27 H 1.09004 * 109.46681 * 210.00518 * 1 2 3 28 28 H 1.08998 * 109.47100 * 329.99666 * 1 2 3 29 29 H 1.07994 * 119.99153 * 359.97438 * 3 2 1 30 30 H 1.07997 * 120.01548 * 179.97438 * 4 3 2 31 31 H 1.09005 * 109.46800 * 160.00569 * 8 7 5 32 32 H 1.08998 * 109.47396 * 40.00419 * 8 7 5 33 33 H 1.09001 * 109.47786 * 150.00139 * 12 11 9 34 34 H 1.08998 * 109.47558 * 30.00002 * 12 11 9 35 35 H 0.97004 * 120.00247 * 180.02562 * 16 15 13 36 36 H 1.08993 * 109.47381 * 30.00157 * 21 11 9 37 37 H 1.09002 * 109.46817 * 150.00395 * 21 11 9 38 38 H 1.09001 * 115.54834 * 29.33239 * 22 21 11 39 39 H 1.09004 * 117.49985 * 359.97438 * 23 22 21 40 40 H 1.09003 * 117.50367 * 145.02057 * 23 22 21 41 41 H 1.09007 * 117.50056 * 214.98124 * 24 22 21 42 42 H 1.09000 * 117.50138 * 0.02562 * 24 22 21 43 43 H 1.08000 * 119.99019 * 179.71953 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1978 0.0000 4 6 3.5796 1.1990 0.0005 5 6 4.2725 0.0001 0.0005 6 9 5.6235 0.0000 0.0005 7 6 3.5798 -1.1986 0.0005 8 6 4.3324 -2.5041 0.0011 9 6 4.7977 -2.8165 -1.3978 10 8 4.5434 -2.0537 -2.3058 11 7 5.4962 -3.9434 -1.6399 12 6 5.9489 -4.2467 -2.9997 13 6 4.8917 -5.0490 -3.7139 14 1 3.9747 -5.3074 -3.2054 15 6 5.0932 -5.4487 -5.0179 16 7 6.2077 -5.1294 -5.6388 17 14 3.7825 -6.4426 -5.9034 18 1 2.8438 -5.5211 -6.5924 19 1 4.4267 -7.3317 -6.9031 20 1 3.0353 -7.2650 -4.9182 21 6 5.8027 -4.8650 -0.5431 22 6 7.1403 -4.4770 0.0903 23 6 8.2861 -5.4864 -0.0043 24 6 7.5836 -5.2499 1.3341 25 6 2.1976 -1.1974 -0.0054 26 1 -0.3633 -0.0001 -1.0277 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3633 0.8899 0.5139 29 1 1.6572 2.1327 -0.0004 30 1 4.1189 2.1347 0.0001 31 1 3.6771 -3.3012 0.3525 32 1 5.1956 -2.4256 0.6620 33 1 6.8734 -4.8223 -2.9551 34 1 6.1258 -3.3166 -3.5398 35 1 6.3493 -5.4102 -6.5565 36 1 5.0153 -4.8101 0.2085 37 1 5.8655 -5.8821 -0.9300 38 1 7.3959 -3.4187 0.0378 39 1 8.0869 -6.4272 -0.5176 40 1 9.2959 -5.0924 -0.1193 41 1 8.1312 -4.7002 2.0997 42 1 6.9225 -6.0351 1.7009 43 1 1.6570 -2.1323 -0.0100 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448909607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:20 Heat of formation + Delta-G solvation = -59.329060 kcal Electronic energy + Delta-G solvation = -25046.089713 eV Core-core repulsion = 21391.363127 eV Total energy + Delta-G solvation = -3654.726586 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.153 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.88649 -41.05274 -39.88388 -38.36094 -36.13601 -34.71569 -34.21272 -32.91917 -30.35296 -28.66074 -27.52132 -27.31576 -24.92141 -23.48510 -23.17244 -22.16251 -21.67200 -19.94343 -18.64518 -18.52136 -17.98628 -17.64123 -17.35050 -16.51906 -16.35911 -16.20796 -16.00030 -15.61038 -14.99108 -14.88917 -14.50445 -14.46775 -14.34835 -14.27662 -14.07111 -13.62563 -13.35469 -13.25097 -12.90549 -12.76595 -12.65621 -12.58095 -12.51119 -12.33674 -12.29703 -12.22051 -11.88939 -11.71761 -11.29144 -10.86829 -10.67160 -10.64651 -9.86926 -9.45878 -9.36688 -8.22652 -6.37884 0.18743 0.27843 1.35351 1.38825 1.48483 1.80786 2.23323 2.40737 2.66660 2.96445 3.06946 3.37939 3.54115 3.69371 3.78198 3.93868 3.96182 4.04814 4.17309 4.24990 4.31222 4.41708 4.47485 4.50196 4.59745 4.71890 4.81637 4.85797 4.89457 4.97651 5.01429 5.05231 5.06370 5.20222 5.22923 5.28108 5.32628 5.33367 5.34189 5.56777 5.58656 5.84422 5.99625 6.05595 6.68733 6.77318 7.27335 7.46602 8.84810 Molecular weight = 305.15amu Principal moments of inertia in cm(-1) A = 0.010585 B = 0.004915 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2644.683717 B = 5695.529206 C = 7388.029632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.099 4.099 3 C -0.095 4.095 4 C -0.158 4.158 5 C 0.073 3.927 6 F -0.155 7.155 7 C -0.108 4.108 8 C -0.089 4.089 9 C 0.501 3.499 10 O -0.591 6.591 11 N -0.598 5.598 12 C 0.267 3.733 13 C -0.540 4.540 14 H 0.056 0.944 15 C 0.006 3.994 16 N -0.930 5.930 17 Si 0.969 3.031 18 H -0.281 1.281 19 H -0.275 1.275 20 H -0.258 1.258 21 C 0.140 3.860 22 C -0.188 4.188 23 C -0.190 4.190 24 C -0.140 4.140 25 C -0.095 4.095 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.149 0.851 31 H 0.133 0.867 32 H 0.115 0.885 33 H 0.020 0.980 34 H -0.011 1.011 35 H 0.266 0.734 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.114 0.886 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.521 5.791 19.299 21.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.099 4.099 3 C -0.113 4.113 4 C -0.176 4.176 5 C 0.054 3.946 6 F -0.134 7.134 7 C -0.110 4.110 8 C -0.129 4.129 9 C 0.290 3.710 10 O -0.472 6.472 11 N -0.328 5.328 12 C 0.145 3.855 13 C -0.579 4.579 14 H 0.074 0.926 15 C -0.193 4.193 16 N -0.570 5.570 17 Si 0.793 3.207 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.182 1.182 21 C 0.017 3.983 22 C -0.208 4.208 23 C -0.227 4.227 24 C -0.178 4.178 25 C -0.112 4.112 26 H 0.090 0.910 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.181 0.819 30 H 0.167 0.833 31 H 0.151 0.849 32 H 0.133 0.867 33 H 0.038 0.962 34 H 0.008 0.992 35 H 0.075 0.925 36 H 0.124 0.876 37 H 0.093 0.907 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.488 6.133 18.660 21.021 hybrid contribution 0.535 -0.361 -1.316 1.466 sum -6.952 5.772 17.344 19.556 Atomic orbital electron populations 1.20834 0.88304 1.04403 1.03047 1.20338 0.98203 0.92373 0.99019 1.21250 0.92382 0.99318 0.98305 1.21365 0.96039 0.96613 1.03601 1.17936 0.76440 0.95524 1.04727 1.91424 1.30331 1.97515 1.94155 1.19589 0.95153 0.92975 1.03234 1.20656 1.02283 0.96444 0.93481 1.21097 0.77921 0.80679 0.91333 1.90648 1.58036 1.49992 1.48536 1.48159 1.53303 1.21510 1.09851 1.18655 0.94294 0.94016 0.78509 1.21699 1.03557 1.34052 0.98555 0.92588 1.25894 0.98005 0.97374 0.97985 1.70073 1.26910 1.47273 1.12744 0.85402 0.78623 0.78319 0.78400 1.20711 1.20009 1.18225 1.21300 0.95811 0.93073 0.88084 1.22718 0.96339 0.97491 1.04242 1.23063 0.96984 1.00411 1.02211 1.23036 1.02524 1.02199 0.90005 1.21085 0.91670 0.99736 0.98758 0.90956 0.90307 0.89350 0.81927 0.83338 0.84876 0.86699 0.96229 0.99247 0.92472 0.87583 0.90683 0.89489 0.89119 0.89072 0.87218 0.86727 0.83770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.60 10.01 71.24 0.71 -0.88 16 2 C -0.10 -2.18 5.88 -19.86 -0.12 -2.30 16 3 C -0.09 -2.02 9.70 22.26 0.22 -1.80 16 4 C -0.16 -4.11 10.03 22.31 0.22 -3.89 16 5 C 0.07 2.38 7.13 22.38 0.16 2.54 16 6 F -0.16 -5.63 16.66 44.97 0.75 -4.89 16 7 C -0.11 -3.39 4.43 -19.82 -0.09 -3.48 16 8 C -0.09 -2.75 4.11 29.10 0.12 -2.63 16 9 C 0.50 22.09 7.66 87.66 0.67 22.76 16 10 O -0.59 -32.61 15.53 -3.04 -0.05 -32.66 16 11 N -0.60 -26.50 2.46 -826.15 -2.03 -28.53 16 12 C 0.27 15.02 5.16 85.64 0.44 15.46 16 13 C -0.54 -31.80 9.39 25.60 0.24 -31.56 16 14 H 0.06 3.22 7.81 -2.91 -0.02 3.20 16 15 C 0.01 0.36 5.46 84.65 0.46 0.82 16 16 N -0.93 -57.78 13.29 21.45 0.28 -57.50 16 17 Si 0.97 45.49 29.54 68.60 2.03 47.52 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 19 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 20 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 21 C 0.14 4.50 5.49 86.38 0.47 4.97 16 22 C -0.19 -5.33 5.94 -10.80 -0.06 -5.40 16 23 C -0.19 -4.97 10.18 30.59 0.31 -4.66 16 24 C -0.14 -2.78 10.25 30.59 0.31 -2.47 16 25 C -0.09 -2.48 9.32 22.26 0.21 -2.28 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 28 H 0.09 0.90 8.08 -2.39 -0.02 0.88 16 29 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 31 H 0.13 3.13 7.26 -2.38 -0.02 3.11 16 32 H 0.11 3.13 7.84 -2.39 -0.02 3.11 16 33 H 0.02 1.13 8.07 -2.39 -0.02 1.11 16 34 H -0.01 -0.70 7.42 -2.39 -0.02 -0.72 16 35 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 36 H 0.11 2.59 6.44 -2.39 -0.02 2.58 16 37 H 0.07 2.55 7.81 -2.39 -0.02 2.53 16 38 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 39 H 0.09 2.48 8.03 -2.38 -0.02 2.46 16 40 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.14 3.21 8.04 -2.91 -0.02 3.18 16 Total: -1.00 -79.67 368.96 6.27 -73.40 By element: Atomic # 1 Polarization: 16.44 SS G_CDS: 1.00 Total: 17.43 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.29 Total: -14.78 kcal Atomic # 7 Polarization: -84.29 SS G_CDS: -1.74 Total: -86.03 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -0.05 Total: -32.66 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.75 Total: -4.89 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Total: -79.67 6.27 -73.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448909607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.074 kcal (2) G-P(sol) polarization free energy of solvation -79.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds