Wall clock time and date at job start Fri Apr 10 2020 21:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47105 * 239.99765 * 3 2 1 5 5 H 1.48498 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47079 * 119.99776 * 3 2 1 7 7 C 1.37880 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47153 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46858 * 179.97438 * 11 10 9 13 13 C 1.39947 * 119.99697 * 179.97438 * 12 11 10 14 14 C 1.38858 * 120.01866 * 180.02562 * 13 12 11 15 15 C 1.38108 * 119.97993 * 180.02562 * 14 13 12 16 16 C 1.38698 * 120.02018 * 0.02562 * 15 14 13 17 17 O 1.36003 * 119.98359 * 179.97438 * 16 15 14 18 18 C 1.42894 * 116.99946 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.49307 * 54.97395 * 18 17 16 20 20 C 1.53098 * 109.47720 * 175.00298 * 18 17 16 21 21 C 1.53177 * 109.21356 * 177.55786 * 20 18 17 22 22 C 1.53180 * 109.03525 * 303.11207 * 21 20 18 23 23 C 1.53097 * 109.21119 * 56.88485 * 22 21 20 24 24 O 1.42898 * 109.41405 * 302.42599 * 23 22 21 25 25 C 1.38697 * 120.03768 * 0.24116 * 16 15 14 26 26 C 1.38118 * 120.02079 * 359.48351 * 25 16 15 27 27 H 0.97000 * 119.99524 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46932 * 60.00001 * 9 7 2 29 29 H 1.09000 * 109.47526 * 300.00309 * 9 7 2 30 30 H 1.08999 * 109.47237 * 60.00180 * 10 9 7 31 31 H 1.09005 * 109.47375 * 299.99795 * 10 9 7 32 32 H 1.08999 * 109.47340 * 59.99706 * 11 10 9 33 33 H 1.09005 * 109.46375 * 299.99871 * 11 10 9 34 34 H 0.97003 * 120.00463 * 359.97438 * 12 11 10 35 35 H 1.08005 * 120.00835 * 359.97438 * 14 13 12 36 36 H 1.07997 * 119.99002 * 180.02562 * 15 14 13 37 37 H 1.09002 * 109.52244 * 297.49725 * 20 18 17 38 38 H 1.09004 * 109.52508 * 57.62254 * 20 18 17 39 39 H 1.09005 * 109.54330 * 62.92184 * 21 20 18 40 40 H 1.09005 * 109.54560 * 183.18386 * 21 20 18 41 41 H 1.09002 * 109.46996 * 296.98297 * 22 21 20 42 42 H 1.09005 * 109.58122 * 176.85328 * 22 21 20 43 43 H 1.09007 * 109.47760 * 182.43925 * 23 22 21 44 44 H 1.08997 * 109.48022 * 62.41203 * 23 22 21 45 45 H 1.08000 * 119.99431 * 179.72036 * 25 16 15 46 46 H 1.07999 * 120.01168 * 180.25579 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4323 -6.1006 0.0037 13 6 1.9658 -7.4200 0.0047 14 6 2.8677 -8.4758 0.0056 15 6 2.4065 -9.7775 0.0061 16 6 1.0428 -10.0305 0.0052 17 8 0.5894 -11.3128 0.0052 18 6 -0.8272 -11.4999 0.0037 19 1 -1.2641 -10.9632 -0.8385 20 6 -1.1449 -12.9923 -0.1218 21 6 -2.6624 -13.1915 -0.0615 22 6 -3.1937 -12.5906 1.2435 23 6 -2.7969 -11.1137 1.3163 24 8 -1.3755 -10.9987 1.2244 25 6 0.1412 -8.9766 -0.0013 26 6 0.6006 -7.6741 0.0040 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 2.8719 -3.6036 0.8927 31 1 2.8720 -3.6052 -0.8873 32 1 0.8538 -5.0454 -0.8868 33 1 0.8533 -5.0442 0.8932 34 1 3.3860 -5.9234 0.0032 35 1 3.9297 -8.2789 0.0051 36 1 3.1079 -10.5988 0.0073 37 1 -0.7658 -13.3667 -1.0728 38 1 -0.6734 -13.5353 0.6974 39 1 -3.1299 -12.6908 -0.9094 40 1 -2.8920 -14.2567 -0.0935 41 1 -2.7645 -13.1252 2.0909 42 1 -4.2800 -12.6776 1.2702 43 1 -3.1354 -10.6927 2.2631 44 1 -3.2596 -10.5720 0.4914 45 1 -0.9206 -9.1744 -0.0065 46 1 -0.1016 -6.8536 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168434652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:06 Heat of formation + Delta-G solvation = -80.904925 kcal Electronic energy + Delta-G solvation = -24034.076160 eV Core-core repulsion = 20501.874280 eV Total energy + Delta-G solvation = -3532.201880 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.56042 -39.15340 -37.53887 -35.45338 -34.13664 -33.38696 -31.50297 -31.00729 -30.61781 -28.20031 -26.06799 -25.18331 -24.15160 -23.38460 -22.14307 -21.14852 -20.72901 -20.19061 -18.36731 -17.22982 -16.98926 -16.42575 -16.23234 -15.62703 -15.06412 -14.99060 -14.77190 -14.49553 -14.33703 -14.01826 -13.93994 -13.46250 -13.28675 -13.03753 -12.98584 -12.61099 -12.33651 -12.23939 -11.76536 -11.70898 -11.65669 -11.48735 -11.38079 -10.90294 -10.84868 -10.72506 -10.59759 -10.51719 -9.89761 -9.87617 -9.46765 -9.28481 -9.14639 -8.84450 -8.37954 -6.90167 -6.03125 -4.05855 1.50374 1.80231 2.83739 3.31661 3.36095 3.38390 3.57263 3.80949 4.03309 4.31313 4.33457 4.43900 4.46837 4.54363 4.61793 4.93244 5.00616 5.07320 5.12429 5.24321 5.30528 5.32697 5.43157 5.45653 5.47816 5.55380 5.60045 5.73259 5.73963 5.76797 5.81055 6.08534 6.15623 6.22161 6.47738 6.56944 6.61120 6.65261 6.73924 6.88256 6.98993 7.42337 7.61501 7.66451 7.74860 7.95721 8.05840 8.37810 9.00482 9.58273 11.08185 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.002120 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.999189 B =13206.741037 C =14159.411332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.025 3.975 10 C -0.120 4.120 11 C 0.122 3.878 12 N -0.746 5.746 13 C 0.196 3.804 14 C -0.170 4.170 15 C -0.098 4.098 16 C 0.054 3.946 17 O -0.302 6.302 18 C 0.258 3.742 19 H 0.061 0.939 20 C -0.140 4.140 21 C -0.120 4.120 22 C -0.161 4.161 23 C 0.068 3.932 24 O -0.396 6.396 25 C -0.135 4.135 26 C -0.165 4.165 27 H 0.261 0.739 28 H 0.018 0.982 29 H 0.018 0.982 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.397 0.603 35 H 0.125 0.875 36 H 0.125 0.875 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.100 0.900 44 H 0.053 0.947 45 H 0.124 0.876 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.335 -27.861 -0.203 28.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C -0.001 4.001 12 N -0.375 5.375 13 C 0.092 3.908 14 C -0.193 4.193 15 C -0.117 4.117 16 C 0.009 3.991 17 O -0.217 6.217 18 C 0.163 3.837 19 H 0.078 0.922 20 C -0.178 4.178 21 C -0.157 4.157 22 C -0.198 4.198 23 C -0.008 4.008 24 O -0.317 6.317 25 C -0.154 4.154 26 C -0.188 4.188 27 H 0.071 0.929 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.231 0.769 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.086 0.914 40 H 0.095 0.905 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.118 0.882 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -4.431 -27.675 -0.066 28.027 hybrid contribution 0.399 1.092 -0.138 1.171 sum -4.032 -26.583 -0.204 26.887 Atomic orbital electron populations 1.69955 1.06049 1.26787 1.50611 1.25032 0.94883 0.99313 0.95268 0.86631 0.79561 0.83031 0.78620 1.20241 1.21262 1.20229 1.21178 0.92990 0.90983 1.50908 0.92715 1.19021 0.93853 0.90963 0.97467 1.21843 0.99747 0.93345 1.00862 1.21566 0.92215 0.85891 1.00442 1.44974 1.08766 1.02001 1.81790 1.17872 0.92694 0.85131 0.95077 1.20354 0.98775 0.90835 1.09317 1.20049 0.92231 0.96476 1.02963 1.18578 0.93084 0.82499 1.04919 1.86161 1.21383 1.24927 1.89277 1.22995 0.79535 0.94088 0.87067 0.92205 1.22024 0.96859 0.94588 1.04301 1.21590 0.94186 1.02005 0.97938 1.22262 1.01734 0.97132 0.98714 1.22563 0.79901 0.95544 1.02813 1.87937 1.21604 1.82634 1.39564 1.21004 0.98950 0.92143 1.03328 1.20526 0.93871 0.96546 1.07877 0.92891 0.96381 0.96378 0.92799 0.92819 0.92776 0.92743 0.76897 0.85753 0.85717 0.89853 0.89898 0.91401 0.90498 0.90673 0.90355 0.88184 0.92832 0.85845 0.85686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.77 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.68 9.11 -34.44 -0.31 -14.99 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.02 0.62 4.97 -27.89 -0.14 0.48 16 10 C -0.12 -2.39 5.27 -26.73 -0.14 -2.53 16 11 C 0.12 2.10 4.91 -4.04 -0.02 2.08 16 12 N -0.75 -11.21 5.74 -58.58 -0.34 -11.54 16 13 C 0.20 2.91 6.66 -83.69 -0.56 2.36 16 14 C -0.17 -2.25 9.89 -39.40 -0.39 -2.64 16 15 C -0.10 -1.28 9.98 -39.46 -0.39 -1.68 16 16 C 0.05 0.76 6.57 -39.24 -0.26 0.50 16 17 O -0.30 -3.95 10.07 -43.56 -0.44 -4.39 16 18 C 0.26 2.68 2.53 37.21 0.09 2.78 16 19 H 0.06 0.58 7.34 -51.93 -0.38 0.20 16 20 C -0.14 -1.06 5.78 -26.59 -0.15 -1.22 16 21 C -0.12 -0.67 6.03 -26.55 -0.16 -0.83 16 22 C -0.16 -0.93 6.13 -26.59 -0.16 -1.09 16 23 C 0.07 0.52 6.84 37.21 0.25 0.77 16 24 O -0.40 -4.46 8.93 -59.04 -0.53 -4.99 16 25 C -0.14 -1.89 8.62 -39.46 -0.34 -2.23 16 26 C -0.17 -2.46 9.31 -39.40 -0.37 -2.83 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.05 0.94 7.95 -51.93 -0.41 0.52 16 33 H 0.05 0.95 7.95 -51.93 -0.41 0.54 16 34 H 0.40 5.36 8.49 -40.82 -0.35 5.01 16 35 H 0.12 1.38 8.06 -52.48 -0.42 0.96 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.12 1.57 5.69 -52.49 -0.30 1.27 16 46 H 0.13 1.84 6.73 -52.49 -0.35 1.48 16 LS Contribution 370.97 15.07 5.59 5.59 Total: -1.00 -31.53 370.97 -10.81 -42.33 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.67 Total: 2.02 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -3.14 Total: -19.55 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 0.40 Total: -37.58 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -0.97 Total: -9.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.53 -10.81 -42.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.571 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds