Wall clock time and date at job start Fri Apr 10 2020 21:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86794 * 120.00035 * 2 1 4 4 H 1.48495 * 109.47105 * 239.99765 * 3 2 1 5 5 H 1.48498 * 109.47104 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47079 * 119.99776 * 3 2 1 7 7 C 1.37880 * 119.99715 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99495 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00212 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47094 * 180.02562 * 9 7 2 11 11 C 1.53008 * 109.47153 * 180.02562 * 10 9 7 12 12 N 1.46497 * 109.46858 * 179.97438 * 11 10 9 13 13 C 1.39947 * 119.99697 * 179.97438 * 12 11 10 14 14 C 1.38858 * 120.01866 * 180.02562 * 13 12 11 15 15 C 1.38108 * 119.97993 * 180.02562 * 14 13 12 16 16 C 1.38698 * 120.02018 * 0.02562 * 15 14 13 17 17 O 1.36003 * 119.98359 * 179.97438 * 16 15 14 18 18 C 1.42894 * 116.99946 * 180.02562 * 17 16 15 19 19 H 1.08999 * 109.49307 * 54.97395 * 18 17 16 20 20 C 1.53098 * 109.47720 * 175.00298 * 18 17 16 21 21 C 1.53177 * 109.21356 * 177.55786 * 20 18 17 22 22 C 1.53180 * 109.03525 * 303.11207 * 21 20 18 23 23 C 1.53097 * 109.21119 * 56.88485 * 22 21 20 24 24 O 1.42898 * 109.41405 * 302.42599 * 23 22 21 25 25 C 1.38697 * 120.03768 * 0.24116 * 16 15 14 26 26 C 1.38118 * 120.02079 * 359.48351 * 25 16 15 27 27 H 0.97000 * 119.99524 * 0.02562 * 1 2 3 28 28 H 1.08999 * 109.46932 * 60.00001 * 9 7 2 29 29 H 1.09000 * 109.47526 * 300.00309 * 9 7 2 30 30 H 1.08999 * 109.47237 * 60.00180 * 10 9 7 31 31 H 1.09005 * 109.47375 * 299.99795 * 10 9 7 32 32 H 1.08999 * 109.47340 * 59.99706 * 11 10 9 33 33 H 1.09005 * 109.46375 * 299.99871 * 11 10 9 34 34 H 0.97003 * 120.00463 * 359.97438 * 12 11 10 35 35 H 1.08005 * 120.00835 * 359.97438 * 14 13 12 36 36 H 1.07997 * 119.99002 * 180.02562 * 15 14 13 37 37 H 1.09002 * 109.52244 * 297.49725 * 20 18 17 38 38 H 1.09004 * 109.52508 * 57.62254 * 20 18 17 39 39 H 1.09005 * 109.54330 * 62.92184 * 21 20 18 40 40 H 1.09005 * 109.54560 * 183.18386 * 21 20 18 41 41 H 1.09002 * 109.46996 * 296.98297 * 22 21 20 42 42 H 1.09005 * 109.58122 * 176.85328 * 22 21 20 43 43 H 1.09007 * 109.47760 * 182.43925 * 23 22 21 44 44 H 1.08997 * 109.48022 * 62.41203 * 23 22 21 45 45 H 1.08000 * 119.99431 * 179.72036 * 25 16 15 46 46 H 1.07999 * 120.01168 * 180.25579 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0027 11 6 1.4802 -4.9871 0.0033 12 7 2.4323 -6.1006 0.0037 13 6 1.9658 -7.4200 0.0047 14 6 2.8677 -8.4758 0.0056 15 6 2.4065 -9.7775 0.0061 16 6 1.0428 -10.0305 0.0052 17 8 0.5894 -11.3128 0.0052 18 6 -0.8272 -11.4999 0.0037 19 1 -1.2641 -10.9632 -0.8385 20 6 -1.1449 -12.9923 -0.1218 21 6 -2.6624 -13.1915 -0.0615 22 6 -3.1937 -12.5906 1.2435 23 6 -2.7969 -11.1137 1.3163 24 8 -1.3755 -10.9987 1.2244 25 6 0.1412 -8.9766 -0.0013 26 6 0.6006 -7.6741 0.0040 27 1 -0.4849 0.8401 -0.0004 28 1 0.6241 -2.5575 -0.8880 29 1 0.6247 -2.5563 0.8919 30 1 2.8719 -3.6036 0.8927 31 1 2.8720 -3.6052 -0.8873 32 1 0.8538 -5.0454 -0.8868 33 1 0.8533 -5.0442 0.8932 34 1 3.3860 -5.9234 0.0032 35 1 3.9297 -8.2789 0.0051 36 1 3.1079 -10.5988 0.0073 37 1 -0.7658 -13.3667 -1.0728 38 1 -0.6734 -13.5353 0.6974 39 1 -3.1299 -12.6908 -0.9094 40 1 -2.8920 -14.2567 -0.0935 41 1 -2.7645 -13.1252 2.0909 42 1 -4.2800 -12.6776 1.2702 43 1 -3.1354 -10.6927 2.2631 44 1 -3.2596 -10.5720 0.4914 45 1 -0.9206 -9.1744 -0.0065 46 1 -0.1016 -6.8536 0.0031 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168434652.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:05 Heat of formation + Delta-G solvation = -98.034126 kcal Electronic energy + Delta-G solvation = -24034.818938 eV Core-core repulsion = 20501.874280 eV Total energy + Delta-G solvation = -3532.944658 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.43852 -40.07682 -38.53610 -36.85182 -35.22287 -34.72931 -33.16589 -31.99077 -31.48495 -29.58872 -27.62813 -25.92525 -25.16536 -24.69483 -23.30169 -22.29969 -21.95997 -21.21105 -19.31007 -18.52761 -18.22959 -17.76782 -17.18013 -16.66571 -16.46951 -16.29660 -15.97271 -15.68211 -15.15403 -14.98880 -14.91994 -14.38707 -14.34291 -14.09842 -14.07267 -13.81437 -13.69344 -13.66330 -13.24352 -13.01961 -12.68274 -12.55759 -12.37970 -12.30420 -12.15695 -11.96577 -11.67690 -11.63039 -11.45068 -11.36002 -11.20118 -10.56139 -10.55820 -10.45941 -9.91001 -8.20918 -8.04145 -6.31987 0.43404 0.70495 1.40311 1.43176 1.51076 2.02431 2.39538 2.59793 2.81569 2.97398 3.12493 3.68267 3.77573 3.91351 3.94128 3.98142 4.00499 4.07825 4.17529 4.24171 4.37363 4.44140 4.52987 4.56809 4.58855 4.65721 4.76458 4.81884 4.93434 4.97033 5.00524 5.06536 5.07889 5.10485 5.15965 5.22703 5.32131 5.40069 5.49099 5.49597 5.70883 5.72072 5.83032 6.10939 6.20891 6.35454 6.54799 6.84308 6.94868 7.37198 8.90787 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024927 B = 0.002120 C = 0.001977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.999189 B =13206.741037 C =14159.411332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.026 3.974 10 C -0.103 4.103 11 C 0.138 3.862 12 N -0.743 5.743 13 C 0.179 3.821 14 C -0.163 4.163 15 C -0.102 4.102 16 C 0.048 3.952 17 O -0.314 6.314 18 C 0.250 3.750 19 H 0.064 0.936 20 C -0.136 4.136 21 C -0.117 4.117 22 C -0.156 4.156 23 C 0.059 3.941 24 O -0.424 6.424 25 C -0.141 4.141 26 C -0.181 4.181 27 H 0.264 0.736 28 H -0.005 1.005 29 H -0.006 1.006 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.047 0.953 34 H 0.406 0.594 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.098 0.902 43 H 0.104 0.896 44 H 0.061 0.939 45 H 0.130 0.870 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.437 -28.938 -0.427 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.582 4.582 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.141 4.141 11 C 0.014 3.986 12 N -0.375 5.375 13 C 0.076 3.924 14 C -0.185 4.185 15 C -0.121 4.121 16 C 0.003 3.997 17 O -0.229 6.229 18 C 0.156 3.844 19 H 0.081 0.919 20 C -0.174 4.174 21 C -0.154 4.154 22 C -0.194 4.194 23 C -0.017 4.017 24 O -0.346 6.346 25 C -0.160 4.160 26 C -0.204 4.204 27 H 0.073 0.927 28 H 0.013 0.987 29 H 0.012 0.988 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.241 0.759 35 H 0.167 0.833 36 H 0.164 0.836 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.117 0.883 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.148 0.852 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.524 -28.787 -0.290 29.003 hybrid contribution 0.052 1.333 -0.053 1.335 sum -3.472 -27.454 -0.343 27.675 Atomic orbital electron populations 1.70092 1.07785 1.27868 1.51543 1.26003 0.95809 1.03443 0.94757 0.85487 0.78246 0.78046 0.79189 1.19144 1.20915 1.19177 1.21653 0.93620 0.92260 1.50675 0.91992 1.18922 0.94355 0.92740 0.95143 1.21562 0.98521 0.92628 1.01396 1.21182 0.92044 0.85444 0.99942 1.44708 1.08717 1.01523 1.82506 1.18025 0.92979 0.85238 0.96167 1.20615 0.99765 0.90304 1.07819 1.20369 0.92387 0.97140 1.02248 1.18825 0.93621 0.82928 1.04330 1.86151 1.23251 1.24348 1.89161 1.23311 0.78280 0.95882 0.86975 0.91878 1.22059 0.98439 0.92388 1.04476 1.21624 0.92505 1.03206 0.98053 1.22238 1.02933 0.95550 0.98671 1.22806 0.78280 0.97195 1.03408 1.87888 1.23603 1.83161 1.39918 1.21082 0.99515 0.91935 1.03515 1.20606 0.94190 0.96827 1.08775 0.92750 0.98695 0.98782 0.92227 0.92136 0.93302 0.93480 0.75868 0.83349 0.83601 0.88901 0.90655 0.90580 0.88742 0.91260 0.88334 0.87789 0.92060 0.85243 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.77 13.29 21.45 0.28 -56.49 16 2 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 3 Si 0.97 44.12 29.54 68.60 2.03 46.14 16 4 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.77 9.11 25.60 0.23 -30.54 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.36 4.97 29.85 0.15 1.51 16 10 C -0.10 -4.10 5.27 30.60 0.16 -3.94 16 11 C 0.14 4.77 4.91 86.38 0.42 5.19 16 12 N -0.74 -21.73 5.74 -339.25 -1.95 -23.68 16 13 C 0.18 5.19 6.66 38.14 0.25 5.44 16 14 C -0.16 -4.03 9.89 22.39 0.22 -3.81 16 15 C -0.10 -2.53 9.98 22.35 0.22 -2.31 16 16 C 0.05 1.32 6.57 22.49 0.15 1.46 16 17 O -0.31 -8.03 10.07 -70.82 -0.71 -8.74 16 18 C 0.25 5.06 2.53 72.01 0.18 5.25 16 19 H 0.06 1.20 7.34 -2.39 -0.02 1.18 16 20 C -0.14 -1.90 5.78 30.69 0.18 -1.72 16 21 C -0.12 -1.06 6.03 30.71 0.19 -0.88 16 22 C -0.16 -1.56 6.13 30.69 0.19 -1.37 16 23 C 0.06 0.85 6.84 72.01 0.49 1.34 16 24 O -0.42 -9.48 8.93 -126.21 -1.13 -10.60 16 25 C -0.14 -3.97 8.62 22.35 0.19 -3.78 16 26 C -0.18 -5.45 9.31 22.39 0.21 -5.24 16 27 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 28 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 32 H 0.05 1.73 7.95 -2.39 -0.02 1.71 16 33 H 0.05 1.68 7.95 -2.38 -0.02 1.67 16 34 H 0.41 10.33 8.49 -92.71 -0.79 9.54 16 35 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 36 H 0.15 2.92 8.06 -2.91 -0.02 2.90 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 39 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.10 0.60 8.14 -2.38 -0.02 0.58 16 43 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 45 H 0.13 3.35 5.69 -2.91 -0.02 3.33 16 46 H 0.12 3.61 6.73 -2.91 -0.02 3.59 16 Total: -1.00 -67.88 370.97 2.59 -65.28 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.17 Total: 21.14 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 3.90 Total: -33.05 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -1.66 Total: -80.17 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -1.84 Total: -19.35 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -67.88 2.59 -65.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168434652.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.752 kcal (2) G-P(sol) polarization free energy of solvation -67.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds