Wall clock time and date at job start Fri Apr 10 2020 21:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99848 * 2 1 4 4 H 1.48503 * 109.46912 * 239.99912 * 3 2 1 5 5 H 1.48501 * 109.46829 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47335 * 120.00238 * 3 2 1 7 7 C 1.37876 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00728 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99689 * 0.02562 * 7 2 1 10 10 C 1.53007 * 109.47114 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47015 * 180.02562 * 10 9 7 12 12 C 1.52998 * 109.47194 * 59.99752 * 11 10 9 13 13 N 1.46901 * 109.46938 * 180.02562 * 12 11 10 14 14 C 1.39771 * 111.00519 * 68.30696 * 13 12 11 15 15 C 1.54427 * 111.77182 * 189.13089 * 14 13 12 16 16 C 1.50761 * 109.02369 * 282.58460 * 15 14 13 17 17 H 1.08994 * 108.85431 * 213.82557 * 16 15 14 18 18 F 1.39893 * 108.85337 * 332.21226 * 16 15 14 19 19 C 1.54169 * 112.60702 * 93.01895 * 16 15 14 20 20 F 1.39900 * 108.98197 * 79.13173 * 19 16 15 21 21 F 1.39900 * 108.97920 * 197.92878 * 19 16 15 22 22 C 1.53824 * 111.97163 * 318.48926 * 19 16 15 23 23 C 1.47631 * 110.99761 * 197.19974 * 13 12 11 24 24 C 1.52998 * 109.47441 * 299.99840 * 12 11 10 25 25 C 1.52998 * 109.47360 * 59.99825 * 9 7 2 26 26 H 0.96997 * 120.00833 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.47121 * 300.00112 * 9 7 2 28 28 H 1.09000 * 109.46658 * 59.99921 * 10 9 7 29 29 H 1.09000 * 109.46630 * 299.99919 * 10 9 7 30 30 H 1.09000 * 109.46789 * 299.99688 * 11 10 9 31 31 H 1.08996 * 109.46832 * 180.02562 * 11 10 9 32 32 H 1.09000 * 109.47305 * 60.00252 * 12 11 10 33 33 H 1.09002 * 109.01993 * 309.71657 * 14 13 12 34 34 H 1.09003 * 109.02041 * 68.53174 * 14 13 12 35 35 H 1.08992 * 109.55099 * 42.45191 * 15 14 13 36 36 H 1.09004 * 109.54560 * 162.63930 * 15 14 13 37 37 H 1.09006 * 109.04930 * 79.59306 * 22 19 16 38 38 H 1.09001 * 109.05026 * 198.56246 * 22 19 16 39 39 H 1.08996 * 109.74687 * 269.98327 * 23 13 12 40 40 H 1.08995 * 109.75157 * 30.70592 * 23 13 12 41 41 H 1.09000 * 109.47205 * 179.97438 * 24 12 11 42 42 H 1.09000 * 109.47207 * 300.00472 * 24 12 11 43 43 H 1.09004 * 109.47128 * 300.00293 * 25 9 7 44 44 H 1.09000 * 109.47299 * 59.99521 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2839 2.7464 -0.0006 6 1 3.1028 1.6965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 -0.0001 12 6 0.6012 -5.0678 -1.2496 13 7 -0.1337 -6.3398 -1.2499 14 6 -1.0850 -6.3690 -0.2263 15 6 -1.7091 -7.7722 -0.0641 16 6 -2.7237 -7.9882 -1.1581 17 1 -3.5378 -8.5990 -0.7679 18 9 -3.2393 -6.7476 -1.5478 19 6 -2.1233 -8.6886 -2.3933 20 9 -2.0261 -10.0603 -2.1363 21 9 -2.9730 -8.4900 -3.4868 22 6 -0.7272 -8.1446 -2.7414 23 6 -0.6624 -6.6450 -2.5941 24 6 -0.3931 -3.9050 -1.2496 25 6 0.3719 -2.5805 -1.2490 26 1 -0.4851 0.8399 0.0004 27 1 0.6241 -2.5567 0.8903 28 1 2.8720 -3.6042 0.8905 29 1 2.8720 -3.6042 -0.8895 30 1 0.8535 -5.0451 0.8897 31 1 2.1888 -5.8155 0.0003 32 1 1.2281 -5.0098 -2.1394 33 1 -0.6076 -6.0821 0.7107 34 1 -1.8747 -5.6531 -0.4546 35 1 -0.9282 -8.5292 -0.1362 36 1 -2.1978 -7.8439 0.9076 37 1 0.0077 -8.5994 -2.0771 38 1 -0.4883 -8.4106 -3.7712 39 1 -1.6606 -6.2210 -2.7022 40 1 -0.0005 -6.2287 -3.3534 41 1 -1.0192 -3.9622 -2.1400 42 1 -1.0200 -3.9629 -0.3598 43 1 -0.3365 -1.7520 -1.2494 44 1 0.9988 -2.5229 -2.1388 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173330558.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:33:53 Heat of formation + Delta-G solvation = -156.270247 kcal Electronic energy + Delta-G solvation = -27189.186657 eV Core-core repulsion = 23111.859951 eV Total energy + Delta-G solvation = -4077.326706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.46399 -48.15662 -47.12625 -39.64519 -36.59645 -33.61640 -32.38344 -31.98267 -29.73170 -28.79009 -26.27581 -25.27643 -24.16449 -21.98961 -21.43426 -20.54693 -19.91535 -18.44135 -18.01999 -17.65752 -17.30814 -16.32582 -16.11346 -15.55780 -15.38198 -15.04375 -14.56487 -14.15520 -13.89875 -13.70360 -13.58710 -13.51782 -13.33988 -13.24488 -12.84153 -12.70366 -12.35587 -12.25537 -11.83820 -11.68017 -11.49236 -11.31281 -11.25912 -11.01020 -10.92401 -10.67199 -10.49446 -10.37497 -10.23397 -10.05182 -9.90801 -9.31946 -8.96358 -8.67234 -8.30317 -7.85538 -5.95875 -4.02277 3.08436 3.32472 3.37432 3.39905 3.62384 3.89064 3.92336 4.18025 4.37657 4.45476 4.55773 4.68091 5.03567 5.13761 5.21431 5.30331 5.33317 5.43552 5.47389 5.55016 5.60507 5.72073 5.84448 5.92027 6.00553 6.09554 6.16869 6.27324 6.39907 6.41359 6.62620 6.66787 6.79161 6.93365 7.11123 7.23152 7.36442 7.50551 7.59341 7.76917 8.03822 8.17917 8.49696 9.01946 9.62415 11.09371 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.032920 B = 0.003399 C = 0.003308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.354591 B = 8236.591984 C = 8463.079155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.514 4.514 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.105 4.105 12 C 0.095 3.905 13 N -0.551 5.551 14 C 0.058 3.942 15 C -0.147 4.147 16 C 0.065 3.935 17 H 0.100 0.900 18 F -0.185 7.185 19 C 0.265 3.735 20 F -0.195 7.195 21 F -0.194 7.194 22 C -0.152 4.152 23 C 0.050 3.950 24 C -0.145 4.145 25 C -0.105 4.105 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.076 0.924 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.110 0.890 38 H 0.091 0.909 39 H 0.063 0.937 40 H 0.087 0.913 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.235 -18.052 -2.971 18.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.139 4.139 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.143 4.143 12 C -0.011 4.011 13 N -0.274 5.274 14 C -0.072 4.072 15 C -0.185 4.185 16 C 0.028 3.972 17 H 0.117 0.883 18 F -0.166 7.166 19 C 0.228 3.772 20 F -0.176 7.176 21 F -0.175 7.175 22 C -0.190 4.190 23 C -0.077 4.077 24 C -0.184 4.184 25 C -0.144 4.144 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.128 0.872 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.105 0.895 41 H 0.058 0.942 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.139 -18.287 -2.898 18.972 hybrid contribution -0.362 1.382 -0.359 1.473 sum -4.501 -16.905 -3.257 17.795 Atomic orbital electron populations 1.69859 1.05845 1.26369 1.50906 1.24959 0.94809 0.98947 0.95230 0.86725 0.79653 0.83441 0.78557 1.20365 1.21381 1.20354 1.21211 0.92836 0.90836 1.50302 0.92884 1.18644 0.92593 0.91547 0.94129 1.21621 0.98621 0.94216 1.00155 1.21602 0.97956 0.98301 0.96410 1.21793 0.94552 0.85333 0.99471 1.59178 1.29631 1.35228 1.03390 1.21002 0.95082 0.94530 0.96560 1.22173 0.98193 1.00829 0.97317 1.22277 0.98594 0.82707 0.93665 0.88254 1.92833 1.88162 1.43496 1.92065 1.22368 0.92015 0.77963 0.84821 1.93016 1.96874 1.33360 1.94316 1.93037 1.73318 1.94808 1.56304 1.22471 0.92822 0.98900 1.04820 1.21863 1.01257 0.93092 0.91491 1.22233 0.98261 0.97694 1.00171 1.21546 0.99443 0.94637 0.98740 0.93071 0.95885 0.93367 0.93435 0.92705 0.92899 0.90532 0.89491 0.93351 0.88720 0.89002 0.87156 0.89062 0.91849 0.89474 0.94151 0.92511 0.89175 0.94941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.24 11.32 55.43 0.63 -24.61 16 2 C 0.06 1.69 5.30 -17.82 -0.09 1.59 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16 10 C -0.11 -2.15 5.14 -26.73 -0.14 -2.29 16 11 C -0.10 -1.72 5.16 -26.73 -0.14 -1.86 16 12 C 0.10 1.50 2.14 -67.71 -0.14 1.35 16 13 N -0.55 -7.22 3.86 -232.00 -0.90 -8.11 16 14 C 0.06 0.73 3.93 -6.75 -0.03 0.70 16 15 C -0.15 -1.43 5.61 -27.11 -0.15 -1.58 16 16 C 0.06 0.68 3.46 -27.24 -0.09 0.58 16 17 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 18 F -0.19 -2.43 12.56 2.25 0.03 -2.41 16 19 C 0.27 2.89 1.82 -25.69 -0.05 2.84 16 20 F -0.19 -2.14 17.02 2.25 0.04 -2.10 16 21 F -0.19 -2.46 16.68 2.25 0.04 -2.43 16 22 C -0.15 -1.54 4.85 -27.39 -0.13 -1.67 16 23 C 0.05 0.61 4.82 -4.52 -0.02 0.58 16 24 C -0.14 -2.67 4.44 -26.76 -0.12 -2.79 16 25 C -0.11 -2.39 4.97 -26.76 -0.13 -2.53 16 26 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.05 0.91 6.41 -51.93 -0.33 0.57 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 1.22 7.60 -51.93 -0.39 0.83 16 33 H 0.09 1.14 6.01 -51.93 -0.31 0.83 16 34 H 0.05 0.71 4.99 -51.93 -0.26 0.45 16 35 H 0.09 0.86 7.11 -51.93 -0.37 0.49 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.11 1.07 7.26 -51.93 -0.38 0.69 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.86 5.57 -51.93 -0.29 0.57 16 40 H 0.09 1.02 7.49 -51.93 -0.39 0.63 16 41 H 0.04 0.72 7.78 -51.93 -0.40 0.32 16 42 H 0.06 1.09 6.54 -51.93 -0.34 0.75 16 43 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -27.95 328.65 -8.67 -36.62 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.71 Total: 0.21 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -1.73 Total: -18.26 kcal Atomic # 7 Polarization: -32.46 SS G_CDS: -0.27 Total: -32.73 kcal Atomic # 9 Polarization: -7.03 SS G_CDS: 0.10 Total: -6.93 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -27.95 -8.67 -36.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173330558.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.655 kcal (2) G-P(sol) polarization free energy of solvation -27.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds