Wall clock time and date at job start Fri Apr 10 2020 21:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99654 * 2 1 4 4 H 1.48499 * 109.47383 * 239.99880 * 3 2 1 5 5 H 1.48499 * 109.47580 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46968 * 120.00461 * 3 2 1 7 7 C 1.37872 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99969 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99862 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46796 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.46995 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.47067 * 299.99971 * 11 10 9 13 13 N 1.46902 * 109.47449 * 179.97438 * 12 11 10 14 14 C 1.46846 * 110.99617 * 299.21154 * 13 12 11 15 15 C 1.53040 * 109.51964 * 174.15808 * 14 13 12 16 16 C 1.53119 * 109.28089 * 59.17912 * 15 14 13 17 17 C 1.53124 * 109.15841 * 302.34776 * 16 15 14 18 18 H 1.09000 * 109.53108 * 297.68809 * 17 16 15 19 19 C 1.52995 * 109.50242 * 177.59394 * 17 16 15 20 20 F 1.39900 * 109.47420 * 300.19892 * 19 17 16 21 21 F 1.39912 * 109.46993 * 60.19243 * 19 17 16 22 22 F 1.39897 * 109.47231 * 180.19150 * 19 17 16 23 23 C 1.46846 * 111.00204 * 175.00049 * 13 12 11 24 24 C 1.52998 * 109.47223 * 59.99795 * 12 11 10 25 25 C 1.53000 * 109.47068 * 299.99823 * 9 7 2 26 26 H 0.96998 * 120.00077 * 359.97438 * 1 2 3 27 27 H 1.08992 * 109.47400 * 60.00122 * 9 7 2 28 28 H 1.09005 * 109.47370 * 60.00411 * 10 9 7 29 29 H 1.08995 * 109.47538 * 299.99819 * 10 9 7 30 30 H 1.09000 * 109.46742 * 180.02562 * 11 10 9 31 31 H 1.08992 * 109.47204 * 60.00148 * 11 10 9 32 32 H 1.09005 * 109.47527 * 300.00138 * 12 11 10 33 33 H 1.08996 * 109.46231 * 294.17554 * 14 13 12 34 34 H 1.09004 * 109.46418 * 54.14394 * 14 13 12 35 35 H 1.09004 * 109.50602 * 299.23671 * 15 14 13 36 36 H 1.08998 * 109.50366 * 179.12192 * 15 14 13 37 37 H 1.08998 * 109.52394 * 182.44064 * 16 15 14 38 38 H 1.08999 * 109.51878 * 62.24548 * 16 15 14 39 39 H 1.09001 * 109.45990 * 305.85570 * 23 13 12 40 40 H 1.08999 * 109.46398 * 65.83493 * 23 13 12 41 41 H 1.09001 * 109.46798 * 60.00230 * 24 12 11 42 42 H 1.09005 * 109.47521 * 179.97438 * 24 12 11 43 43 H 1.09001 * 109.47001 * 299.99863 * 25 9 7 44 44 H 1.08996 * 109.47141 * 60.00262 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0012 12 6 0.6022 -5.0683 1.2490 13 7 -0.1327 -6.3403 1.2494 14 6 -1.0050 -6.4443 0.0727 15 6 -1.6415 -7.8354 0.0293 16 6 -2.4508 -8.0612 1.3094 17 6 -1.5294 -7.8994 2.5216 18 1 -0.7458 -8.6563 2.4873 19 6 -2.3428 -8.0642 3.8069 20 9 -3.3496 -7.0938 3.8494 21 9 -2.9214 -9.3378 3.8326 22 9 -1.5012 -7.9120 4.9141 23 6 -0.8962 -6.5066 2.4927 24 6 -0.3920 -3.9054 1.2504 25 6 0.3720 -2.5804 1.2491 26 1 -0.4850 0.8400 0.0004 27 1 0.6241 -2.5567 -0.8902 28 1 2.8728 -3.6047 0.8878 29 1 2.8714 -3.6039 -0.8922 30 1 2.1888 -5.8155 -0.0016 31 1 0.8529 -5.0447 -0.8904 32 1 1.2298 -5.0107 2.1384 33 1 -1.7879 -5.6884 0.1330 34 1 -0.4163 -6.2860 -0.8310 35 1 -0.8596 -8.5913 -0.0449 36 1 -2.3009 -7.9071 -0.8356 37 1 -2.8704 -9.0672 1.3024 38 1 -3.2569 -7.3296 1.3644 39 1 -0.2285 -6.3933 3.3468 40 1 -1.6799 -5.7505 2.5416 41 1 -1.0197 -3.9631 0.3611 42 1 -1.0180 -3.9635 2.1409 43 1 0.9991 -2.5229 2.1388 44 1 -0.3363 -1.7520 1.2495 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173335501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:21 Heat of formation + Delta-G solvation = -180.904530 kcal Electronic energy + Delta-G solvation = -26743.128190 eV Core-core repulsion = 22664.733261 eV Total energy + Delta-G solvation = -4078.394929 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.24177 -47.73170 -47.69480 -39.76070 -37.04080 -33.90743 -32.01066 -31.69723 -29.73412 -28.55490 -26.01593 -25.06520 -23.39911 -22.69688 -21.70554 -20.68463 -19.77692 -18.59804 -18.40718 -18.20101 -17.60250 -16.33453 -15.76457 -14.98125 -14.81011 -14.73952 -14.51664 -14.22857 -14.16002 -13.99977 -13.93270 -13.85978 -13.81925 -13.44234 -13.04809 -12.93449 -12.63977 -12.31594 -12.05589 -11.58054 -11.55499 -11.34934 -11.12112 -10.99270 -10.84856 -10.79041 -10.61729 -10.36252 -10.27914 -10.00232 -9.95222 -9.33833 -9.00834 -8.68863 -8.32160 -7.98316 -5.97108 -4.03363 2.59620 3.31981 3.36858 3.39461 3.55812 3.78205 3.89614 4.20252 4.44720 4.58651 4.63442 4.83215 5.02434 5.11921 5.28070 5.34481 5.36649 5.46349 5.52931 5.64616 5.67287 5.72754 5.81841 5.90956 5.98133 6.12476 6.14137 6.24797 6.37623 6.38688 6.57716 6.64407 6.77652 6.90266 7.08416 7.19326 7.24012 7.34769 7.51881 7.75657 8.02334 8.16090 8.48455 9.00799 9.61382 11.08218 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.025558 B = 0.003355 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.287375 B = 8342.726768 C = 8744.489705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.513 4.513 8 H 0.053 0.947 9 C 0.049 3.951 10 C -0.108 4.108 11 C -0.105 4.105 12 C 0.089 3.911 13 N -0.530 5.530 14 C 0.043 3.957 15 C -0.111 4.111 16 C -0.119 4.119 17 C -0.128 4.128 18 H 0.121 0.879 19 C 0.454 3.546 20 F -0.182 7.182 21 F -0.186 7.186 22 F -0.183 7.183 23 C 0.056 3.944 24 C -0.147 4.147 25 C -0.105 4.105 26 H 0.259 0.741 27 H 0.023 0.977 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.042 0.958 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.041 0.959 43 H 0.032 0.968 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.260 -17.785 3.913 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.552 4.552 8 H 0.071 0.929 9 C 0.031 3.969 10 C -0.146 4.146 11 C -0.143 4.143 12 C -0.018 4.018 13 N -0.253 5.253 14 C -0.085 4.085 15 C -0.149 4.149 16 C -0.157 4.157 17 C -0.148 4.148 18 H 0.139 0.861 19 C 0.400 3.600 20 F -0.164 7.164 21 F -0.167 7.167 22 F -0.165 7.165 23 C -0.073 4.073 24 C -0.186 4.186 25 C -0.143 4.143 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.060 0.940 34 H 0.104 0.896 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.060 0.940 43 H 0.051 0.949 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.086 -18.046 3.915 19.153 hybrid contribution -0.344 1.570 0.431 1.664 sum -5.430 -16.476 4.346 17.884 Atomic orbital electron populations 1.69866 1.05854 1.26372 1.50950 1.24962 0.94820 0.98970 0.95209 0.86716 0.79650 0.83388 0.78575 1.20343 1.21375 1.20347 1.21210 0.92858 0.90818 1.50273 0.92855 1.18640 0.92590 0.91568 0.94089 1.21623 0.98631 0.94143 1.00226 1.21608 0.97990 0.98450 0.96236 1.21799 0.94765 0.85554 0.99694 1.62200 1.26868 1.35442 1.00762 1.22242 0.95772 0.95934 0.94570 1.21549 0.99112 0.97959 0.96255 1.21660 0.97613 1.02929 0.93494 1.22512 0.98811 1.02944 0.90549 0.86140 1.20647 0.78913 0.73478 0.86991 1.93178 1.62826 1.63514 1.96866 1.93166 1.85754 1.40887 1.96905 1.93183 1.71031 1.95351 1.56910 1.22001 0.97599 0.92842 0.94820 1.22256 0.98396 0.97934 1.00036 1.21540 0.99470 0.94506 0.98821 0.93076 0.95895 0.93381 0.93295 0.92821 0.92560 0.90388 0.93987 0.89639 0.90851 0.90872 0.90692 0.90841 0.89753 0.93102 0.92626 0.94048 0.94871 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 11.32 55.43 0.63 -24.57 16 2 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 3 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.51 -13.89 8.56 -34.44 -0.29 -14.19 16 8 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.19 2.10 -91.77 -0.19 1.00 16 10 C -0.11 -2.16 5.14 -26.73 -0.14 -2.30 16 11 C -0.11 -1.75 5.01 -26.73 -0.13 -1.88 16 12 C 0.09 1.43 2.23 -67.71 -0.15 1.28 16 13 N -0.53 -7.09 4.64 -226.69 -1.05 -8.15 16 14 C 0.04 0.53 4.63 -3.83 -0.02 0.51 16 15 C -0.11 -1.06 6.09 -26.65 -0.16 -1.22 16 16 C -0.12 -1.11 5.04 -26.61 -0.13 -1.25 16 17 C -0.13 -1.30 2.33 -90.54 -0.21 -1.51 16 18 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 19 C 0.45 4.95 2.69 37.15 0.10 5.05 16 20 F -0.18 -2.20 16.22 2.25 0.04 -2.17 16 21 F -0.19 -2.00 16.86 2.25 0.04 -1.96 16 22 F -0.18 -2.15 16.82 2.25 0.04 -2.11 16 23 C 0.06 0.69 4.06 -3.84 -0.02 0.67 16 24 C -0.15 -2.71 4.51 -26.76 -0.12 -2.83 16 25 C -0.10 -2.39 4.98 -26.76 -0.13 -2.52 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.93 6.29 -51.93 -0.33 0.60 16 32 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 33 H 0.04 0.57 6.62 -51.93 -0.34 0.23 16 34 H 0.09 1.09 6.03 -51.93 -0.31 0.78 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.60 7.88 -51.93 -0.41 0.19 16 38 H 0.07 0.73 7.74 -51.93 -0.40 0.33 16 39 H 0.08 1.04 7.76 -51.93 -0.40 0.64 16 40 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 41 H 0.06 1.05 6.52 -51.93 -0.34 0.71 16 42 H 0.04 0.73 6.65 -51.93 -0.35 0.38 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -27.26 336.59 -8.83 -36.09 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.87 Total: -0.73 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -1.70 Total: -17.61 kcal Atomic # 7 Polarization: -32.29 SS G_CDS: -0.42 Total: -32.72 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.11 Total: -6.24 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.26 -8.83 -36.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173335501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.818 kcal (2) G-P(sol) polarization free energy of solvation -27.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds