Wall clock time and date at job start Fri Apr 10 2020 21:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.50404 * 2 1 4 4 C 1.53037 * 109.50506 * 120.07624 * 2 1 3 5 5 N 1.46843 * 109.52505 * 179.12173 * 4 2 1 6 6 C 1.46906 * 111.00033 * 174.16155 * 5 4 2 7 7 C 1.50695 * 109.47136 * 170.00114 * 6 5 4 8 8 C 1.38296 * 119.93408 * 90.00277 * 7 6 5 9 9 C 1.38098 * 120.07035 * 179.72120 * 8 7 6 10 10 C 1.38874 * 119.93279 * 0.25429 * 9 8 7 11 11 O 1.35745 * 120.07194 * 179.97438 * 10 9 8 12 12 C 1.34830 * 117.00000 * 354.46775 * 11 10 9 13 13 H 1.07993 * 119.99847 * 5.04988 * 12 11 10 14 14 C 1.38657 * 120.00052 * 185.05927 * 12 11 10 15 15 N 1.31557 * 120.00093 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46843 * 89.99567 * 16 14 12 18 18 H 1.48500 * 109.47061 * 209.99717 * 16 14 12 19 19 H 1.48501 * 109.46983 * 329.99590 * 16 14 12 20 20 C 1.38885 * 119.85897 * 359.97438 * 10 9 8 21 21 C 1.38090 * 119.93070 * 0.02562 * 20 10 9 22 22 C 1.46851 * 111.20020 * 298.25471 * 5 4 2 23 23 C 1.53039 * 109.51978 * 61.74429 * 22 5 4 24 24 C 1.53120 * 109.50425 * 239.87887 * 2 1 3 25 25 H 1.08995 * 109.52656 * 302.30835 * 24 2 1 26 26 O 1.42893 * 109.52450 * 62.43984 * 24 2 1 27 27 H 1.08996 * 109.47443 * 299.92558 * 1 2 3 28 28 H 1.09002 * 109.46702 * 59.92586 * 1 2 3 29 29 H 1.09000 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47292 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46700 * 300.07724 * 3 2 1 32 32 H 1.08997 * 109.47360 * 60.07271 * 3 2 1 33 33 H 1.09008 * 109.45969 * 59.10327 * 4 2 1 34 34 H 1.08996 * 109.45212 * 299.13322 * 4 2 1 35 35 H 1.09006 * 109.47093 * 49.99671 * 6 5 4 36 36 H 1.09004 * 109.46777 * 290.00143 * 6 5 4 37 37 H 1.07998 * 119.96537 * 359.97438 * 8 7 6 38 38 H 1.08003 * 120.03608 * 180.22882 * 9 8 7 39 39 H 0.97002 * 120.00107 * 179.97438 * 15 14 12 40 40 H 1.08004 * 120.02912 * 180.02562 * 20 10 9 41 41 H 1.08004 * 119.96510 * 179.97438 * 21 20 10 42 42 H 1.09000 * 109.46277 * 181.75844 * 22 5 4 43 43 H 1.08992 * 109.46190 * 301.73161 * 22 5 4 44 44 H 1.09000 * 109.50272 * 180.88194 * 23 22 5 45 45 H 1.09000 * 109.50671 * 60.75700 * 23 22 5 46 46 H 0.96700 * 114.00210 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0410 -0.7229 1.2483 5 7 3.5093 -0.7416 1.2382 6 6 4.0373 -1.3049 2.4880 7 6 5.5198 -1.5360 2.3479 8 6 6.4099 -0.5355 2.6933 9 6 7.7692 -0.7463 2.5715 10 6 8.2420 -1.9627 2.0967 11 8 9.5776 -2.1727 1.9754 12 6 10.3873 -1.1234 2.2229 13 1 9.9716 -0.1936 2.5820 14 6 11.7536 -1.2381 2.0163 15 7 12.2600 -2.3709 1.5792 16 14 12.8752 0.2159 2.3586 17 1 13.3354 0.1646 3.7696 18 1 14.0502 0.1588 1.4523 19 1 12.1317 1.4802 2.1261 20 6 7.3454 -2.9638 1.7462 21 6 5.9874 -2.7468 1.8703 22 6 4.0230 -1.4730 0.0730 23 6 3.5713 -0.7724 -1.2104 24 6 2.0412 -0.7243 -1.2484 25 1 1.6453 -1.7396 -1.2683 26 8 1.6133 -0.0219 -2.4169 27 1 -0.3634 0.5126 0.8906 28 1 -0.3633 0.5150 -0.8894 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1308 1.4416 -0.0005 31 1 1.6766 1.9566 -0.8893 32 1 1.6789 1.9559 0.8906 33 1 1.6648 -1.7460 1.2550 34 1 1.6905 -0.2013 2.1389 35 1 3.5401 -2.2519 2.6983 36 1 3.8537 -0.6086 3.3064 37 1 6.0416 0.4103 3.0625 38 1 8.4639 0.0341 2.8449 39 1 13.2158 -2.4509 1.4342 40 1 7.7102 -3.9110 1.3770 41 1 5.2896 -3.5248 1.5975 42 1 5.1121 -1.4962 0.1101 43 1 3.6375 -2.4924 0.0853 44 1 3.9396 -1.3243 -2.0752 45 1 3.9678 0.2427 -1.2299 46 1 1.9019 -0.4261 -3.2466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000782577310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:29 Heat of formation + Delta-G solvation = -55.956214 kcal Electronic energy + Delta-G solvation = -25423.064489 eV Core-core repulsion = 21891.944466 eV Total energy + Delta-G solvation = -3531.120023 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19163 -39.01196 -37.20605 -35.93230 -34.18200 -32.34704 -31.69790 -30.19952 -29.53502 -27.26989 -26.32618 -25.88037 -24.84029 -22.96800 -22.13455 -21.50334 -20.07455 -18.63275 -17.97625 -17.39068 -16.94663 -16.03805 -15.39409 -14.98333 -14.81522 -14.55246 -14.42060 -14.10328 -13.92745 -13.60163 -13.41897 -13.36983 -13.11824 -12.75078 -12.65987 -12.38122 -12.10306 -11.84271 -11.78658 -11.69505 -11.53823 -11.27938 -11.20196 -10.97176 -10.85926 -10.74201 -10.60042 -10.46900 -10.41502 -10.20950 -9.82165 -9.34549 -8.84877 -8.21938 -8.17162 -7.18007 -6.46988 -4.05699 2.18371 2.26145 3.11682 3.13059 3.17836 3.94396 3.96241 4.07031 4.49933 4.61659 4.68000 4.87511 5.03175 5.08125 5.17314 5.23382 5.25740 5.30334 5.37467 5.37511 5.54242 5.57296 5.63247 5.70288 5.71170 5.75686 5.84247 5.89910 5.90095 5.97593 6.09552 6.15309 6.19370 6.21275 6.24491 6.41859 6.52170 6.67403 6.88510 7.02500 7.11349 7.19139 7.28159 7.39408 7.43001 7.49764 7.80131 7.98254 8.98851 9.68538 10.70987 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.002927 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.156417 B = 9562.560171 C = 9748.861054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.051 4.051 3 C -0.128 4.128 4 C 0.065 3.935 5 N -0.530 5.530 6 C 0.114 3.886 7 C -0.186 4.186 8 C -0.049 4.049 9 C -0.236 4.236 10 C 0.156 3.844 11 O -0.178 6.178 12 C -0.391 4.391 13 H 0.092 0.908 14 C 0.039 3.961 15 N -0.863 5.863 16 Si 0.941 3.059 17 H -0.273 1.273 18 H -0.277 1.277 19 H -0.267 1.267 20 C -0.194 4.194 21 C -0.068 4.068 22 C 0.055 3.945 23 C -0.151 4.151 24 C 0.114 3.886 25 H 0.047 0.953 26 O -0.564 6.564 27 H 0.054 0.946 28 H 0.064 0.936 29 H 0.048 0.952 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.030 0.970 34 H 0.078 0.922 35 H 0.031 0.969 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.126 0.874 39 H 0.270 0.730 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.027 0.973 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.067 3.285 -3.265 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.052 4.052 3 C -0.185 4.185 4 C -0.063 4.063 5 N -0.254 5.254 6 C -0.012 4.012 7 C -0.187 4.187 8 C -0.067 4.067 9 C -0.255 4.255 10 C 0.102 3.898 11 O -0.081 6.081 12 C -0.468 4.468 13 H 0.110 0.890 14 C -0.165 4.165 15 N -0.498 5.498 16 Si 0.765 3.235 17 H -0.199 1.199 18 H -0.202 1.202 19 H -0.191 1.191 20 C -0.213 4.213 21 C -0.087 4.087 22 C -0.072 4.072 23 C -0.189 4.189 24 C 0.055 3.945 25 H 0.065 0.935 26 O -0.369 6.369 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.048 0.952 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.093 0.907 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.080 0.920 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.798 3.864 -2.958 20.387 hybrid contribution 0.608 -0.576 -0.155 0.852 sum -19.189 3.288 -3.113 19.716 Atomic orbital electron populations 1.21793 0.94246 1.01387 1.02110 1.20536 0.95181 0.96993 0.92476 1.21697 1.02376 0.93678 1.00771 1.22139 0.88161 0.98348 0.97653 1.62037 1.06479 1.54342 1.02578 1.20805 0.91950 0.97251 0.91230 1.19078 0.93540 0.95622 1.10507 1.20574 0.92309 0.97100 0.96759 1.21166 0.95680 0.98992 1.09664 1.19390 0.85325 0.92852 0.92207 1.83973 1.10839 1.37175 1.76095 1.21336 0.87834 0.91926 1.45674 0.89019 1.25293 0.96434 0.98357 0.96409 1.70038 1.13353 1.24539 1.41837 0.85716 0.79304 0.79911 0.78550 1.19867 1.20241 1.19133 1.20163 0.91829 0.99580 1.09751 1.20488 0.94126 0.95936 0.98184 1.22131 1.02094 0.93962 0.89062 1.22378 0.95858 1.02887 0.97772 1.21858 0.93179 0.93853 0.85560 0.93514 1.86490 1.78863 1.55702 1.15820 0.92711 0.91714 0.93244 0.91116 0.92740 0.93405 0.95201 0.90385 0.95073 0.90721 0.87387 0.85595 0.92006 0.86649 0.87613 0.88655 0.95481 0.91618 0.89894 0.77914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 8.36 37.16 0.31 -0.94 16 2 C -0.05 -0.53 0.60 -154.43 -0.09 -0.62 16 3 C -0.13 -1.43 7.87 37.16 0.29 -1.13 16 4 C 0.07 0.70 4.14 -3.84 -0.02 0.68 16 5 N -0.53 -6.70 4.08 -236.11 -0.96 -7.66 16 6 C 0.11 1.52 5.43 -4.98 -0.03 1.50 16 7 C -0.19 -3.06 4.14 -104.58 -0.43 -3.49 16 8 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 9 C -0.24 -5.05 9.17 -39.40 -0.36 -5.41 16 10 C 0.16 3.72 6.65 -39.11 -0.26 3.46 16 11 O -0.18 -5.03 9.76 0.06 0.00 -5.03 16 12 C -0.39 -10.88 9.49 30.89 0.29 -10.58 16 13 H 0.09 2.36 5.20 -52.49 -0.27 2.09 16 14 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 15 N -0.86 -25.20 13.67 55.48 0.76 -24.45 16 16 Si 0.94 20.44 29.55 -169.99 -5.02 15.42 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 20 C -0.19 -4.00 9.99 -39.40 -0.39 -4.39 16 21 C -0.07 -1.18 7.76 -39.61 -0.31 -1.48 16 22 C 0.06 0.71 4.57 -3.83 -0.02 0.69 16 23 C -0.15 -1.70 5.37 -26.65 -0.14 -1.84 16 24 C 0.11 1.17 2.63 -26.60 -0.07 1.10 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 O -0.56 -5.55 12.01 -35.23 -0.42 -5.98 16 27 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.63 7.76 -51.93 -0.40 0.22 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.90 6.01 -51.93 -0.31 0.58 16 31 H 0.05 0.62 7.64 -51.93 -0.40 0.23 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.03 0.31 8.14 -51.92 -0.42 -0.11 16 34 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 35 H 0.03 0.39 8.02 -51.93 -0.42 -0.02 16 36 H 0.07 0.94 8.08 -51.93 -0.42 0.52 16 37 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 38 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 39 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.12 2.32 8.06 -52.48 -0.42 1.89 16 41 H 0.11 1.56 8.06 -52.48 -0.42 1.13 16 42 H 0.10 1.47 5.63 -51.93 -0.29 1.18 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.08 1.05 6.58 -51.93 -0.34 0.71 16 46 H 0.37 2.30 9.09 45.56 0.41 2.72 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -30.22 359.00 -8.47 -38.69 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: -6.52 Total: 6.36 kcal Atomic # 6 Polarization: -21.06 SS G_CDS: -1.71 Total: -22.76 kcal Atomic # 7 Polarization: -31.90 SS G_CDS: -0.21 Total: -32.11 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -0.42 Total: -11.01 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.22 -8.47 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782577310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.270 kcal (2) G-P(sol) polarization free energy of solvation -30.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds