Wall clock time and date at job start Fri Apr 10 2020 21:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.50404 * 2 1 4 4 C 1.53037 * 109.50506 * 120.07624 * 2 1 3 5 5 N 1.46843 * 109.52505 * 179.12173 * 4 2 1 6 6 C 1.46906 * 111.00033 * 174.16155 * 5 4 2 7 7 C 1.50695 * 109.47136 * 170.00114 * 6 5 4 8 8 C 1.38296 * 119.93408 * 90.00277 * 7 6 5 9 9 C 1.38098 * 120.07035 * 179.72120 * 8 7 6 10 10 C 1.38874 * 119.93279 * 0.25429 * 9 8 7 11 11 O 1.35745 * 120.07194 * 179.97438 * 10 9 8 12 12 C 1.34830 * 117.00000 * 354.46775 * 11 10 9 13 13 H 1.07993 * 119.99847 * 5.04988 * 12 11 10 14 14 C 1.38657 * 120.00052 * 185.05927 * 12 11 10 15 15 N 1.31557 * 120.00093 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00005 * 179.97438 * 14 12 11 17 17 H 1.48499 * 109.46843 * 89.99567 * 16 14 12 18 18 H 1.48500 * 109.47061 * 209.99717 * 16 14 12 19 19 H 1.48501 * 109.46983 * 329.99590 * 16 14 12 20 20 C 1.38885 * 119.85897 * 359.97438 * 10 9 8 21 21 C 1.38090 * 119.93070 * 0.02562 * 20 10 9 22 22 C 1.46851 * 111.20020 * 298.25471 * 5 4 2 23 23 C 1.53039 * 109.51978 * 61.74429 * 22 5 4 24 24 C 1.53120 * 109.50425 * 239.87887 * 2 1 3 25 25 H 1.08995 * 109.52656 * 302.30835 * 24 2 1 26 26 O 1.42893 * 109.52450 * 62.43984 * 24 2 1 27 27 H 1.08996 * 109.47443 * 299.92558 * 1 2 3 28 28 H 1.09002 * 109.46702 * 59.92586 * 1 2 3 29 29 H 1.09000 * 109.46851 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47292 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46700 * 300.07724 * 3 2 1 32 32 H 1.08997 * 109.47360 * 60.07271 * 3 2 1 33 33 H 1.09008 * 109.45969 * 59.10327 * 4 2 1 34 34 H 1.08996 * 109.45212 * 299.13322 * 4 2 1 35 35 H 1.09006 * 109.47093 * 49.99671 * 6 5 4 36 36 H 1.09004 * 109.46777 * 290.00143 * 6 5 4 37 37 H 1.07998 * 119.96537 * 359.97438 * 8 7 6 38 38 H 1.08003 * 120.03608 * 180.22882 * 9 8 7 39 39 H 0.97002 * 120.00107 * 179.97438 * 15 14 12 40 40 H 1.08004 * 120.02912 * 180.02562 * 20 10 9 41 41 H 1.08004 * 119.96510 * 179.97438 * 21 20 10 42 42 H 1.09000 * 109.46277 * 181.75844 * 22 5 4 43 43 H 1.08992 * 109.46190 * 301.73161 * 22 5 4 44 44 H 1.09000 * 109.50272 * 180.88194 * 23 22 5 45 45 H 1.09000 * 109.50671 * 60.75700 * 23 22 5 46 46 H 0.96700 * 114.00210 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4422 0.0000 4 6 2.0410 -0.7229 1.2483 5 7 3.5093 -0.7416 1.2382 6 6 4.0373 -1.3049 2.4880 7 6 5.5198 -1.5360 2.3479 8 6 6.4099 -0.5355 2.6933 9 6 7.7692 -0.7463 2.5715 10 6 8.2420 -1.9627 2.0967 11 8 9.5776 -2.1727 1.9754 12 6 10.3873 -1.1234 2.2229 13 1 9.9716 -0.1936 2.5820 14 6 11.7536 -1.2381 2.0163 15 7 12.2600 -2.3709 1.5792 16 14 12.8752 0.2159 2.3586 17 1 13.3354 0.1646 3.7696 18 1 14.0502 0.1588 1.4523 19 1 12.1317 1.4802 2.1261 20 6 7.3454 -2.9638 1.7462 21 6 5.9874 -2.7468 1.8703 22 6 4.0230 -1.4730 0.0730 23 6 3.5713 -0.7724 -1.2104 24 6 2.0412 -0.7243 -1.2484 25 1 1.6453 -1.7396 -1.2683 26 8 1.6133 -0.0219 -2.4169 27 1 -0.3634 0.5126 0.8906 28 1 -0.3633 0.5150 -0.8894 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1308 1.4416 -0.0005 31 1 1.6766 1.9566 -0.8893 32 1 1.6789 1.9559 0.8906 33 1 1.6648 -1.7460 1.2550 34 1 1.6905 -0.2013 2.1389 35 1 3.5401 -2.2519 2.6983 36 1 3.8537 -0.6086 3.3064 37 1 6.0416 0.4103 3.0625 38 1 8.4639 0.0341 2.8449 39 1 13.2158 -2.4509 1.4342 40 1 7.7102 -3.9110 1.3770 41 1 5.2896 -3.5248 1.5975 42 1 5.1121 -1.4962 0.1101 43 1 3.6375 -2.4924 0.0853 44 1 3.9396 -1.3243 -2.0752 45 1 3.9678 0.2427 -1.2299 46 1 1.9019 -0.4261 -3.2466 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000782577310.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:35:28 Heat of formation + Delta-G solvation = -76.261073 kcal Electronic energy + Delta-G solvation = -25423.944973 eV Core-core repulsion = 21891.944466 eV Total energy + Delta-G solvation = -3532.000508 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.23710 -40.54851 -38.65731 -37.03923 -35.15260 -34.26219 -32.74318 -31.78101 -30.90322 -28.07381 -27.68550 -27.13802 -26.28002 -23.90093 -23.67515 -22.79858 -21.40658 -19.88700 -19.40925 -18.80385 -18.16673 -16.97724 -16.60788 -16.47261 -16.20631 -15.77118 -15.55991 -15.48016 -15.38504 -14.98113 -14.76420 -14.43582 -14.25734 -14.16865 -13.85622 -13.61909 -13.31756 -13.00071 -12.84857 -12.77254 -12.70245 -12.66796 -12.36000 -12.30945 -12.14493 -12.07822 -11.96512 -11.77424 -11.43190 -11.16901 -11.02779 -10.79317 -10.65909 -9.75697 -9.22649 -8.83362 -8.47680 -6.15564 0.59754 0.67383 1.34698 1.43589 1.52077 2.17417 2.73568 3.02838 3.28048 3.35383 3.51821 3.70031 3.79865 3.98657 4.05174 4.10073 4.19035 4.24745 4.32971 4.45439 4.46879 4.50160 4.59644 4.68313 4.68932 4.79790 4.84552 4.86801 4.90677 4.93087 5.06870 5.10129 5.13795 5.16131 5.19486 5.23799 5.30736 5.35848 5.45659 5.56185 5.63232 5.72371 5.82099 6.02921 6.15771 6.19420 6.29138 6.91546 6.97390 7.78296 8.75595 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024171 B = 0.002927 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.156417 B = 9562.560171 C = 9748.861054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.054 4.054 3 C -0.122 4.122 4 C 0.067 3.933 5 N -0.538 5.538 6 C 0.116 3.884 7 C -0.156 4.156 8 C -0.050 4.050 9 C -0.244 4.244 10 C 0.116 3.884 11 O -0.233 6.233 12 C -0.413 4.413 13 H 0.101 0.899 14 C -0.022 4.022 15 N -0.921 5.921 16 Si 1.017 2.983 17 H -0.263 1.263 18 H -0.271 1.271 19 H -0.254 1.254 20 C -0.204 4.204 21 C -0.057 4.057 22 C 0.057 3.943 23 C -0.147 4.147 24 C 0.119 3.881 25 H 0.056 0.944 26 O -0.574 6.574 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.041 0.959 34 H 0.089 0.911 35 H 0.050 0.950 36 H 0.090 0.910 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.273 0.727 40 H 0.111 0.889 41 H 0.141 0.859 42 H 0.065 0.935 43 H 0.037 0.963 44 H 0.074 0.926 45 H 0.064 0.936 46 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.471 4.251 -2.772 24.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 C -0.180 4.180 4 C -0.060 4.060 5 N -0.263 5.263 6 C -0.011 4.011 7 C -0.157 4.157 8 C -0.068 4.068 9 C -0.263 4.263 10 C 0.065 3.935 11 O -0.140 6.140 12 C -0.489 4.489 13 H 0.118 0.882 14 C -0.220 4.220 15 N -0.559 5.559 16 Si 0.836 3.164 17 H -0.187 1.187 18 H -0.196 1.196 19 H -0.177 1.177 20 C -0.223 4.223 21 C -0.075 4.075 22 C -0.071 4.071 23 C -0.185 4.185 24 C 0.060 3.940 25 H 0.074 0.926 26 O -0.382 6.382 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.154 0.846 38 H 0.134 0.866 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.159 0.841 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.093 0.907 45 H 0.083 0.917 46 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges -23.272 4.834 -2.469 23.897 hybrid contribution 1.263 -0.897 -0.347 1.587 sum -22.010 3.937 -2.816 22.536 Atomic orbital electron populations 1.21734 0.93038 1.01999 1.02226 1.20574 0.96089 0.96227 0.92511 1.21621 1.01066 0.94543 1.00736 1.22186 0.86452 0.99153 0.98238 1.62005 1.08061 1.54261 1.01935 1.20850 0.89121 0.98898 0.92209 1.19552 0.95635 0.94258 1.06277 1.20886 0.90929 0.98746 0.96252 1.21244 0.97254 0.97980 1.09851 1.19923 0.84533 0.94873 0.94140 1.83936 1.12808 1.38115 1.79093 1.21804 0.88600 0.92442 1.46027 0.88212 1.26569 0.97802 1.01597 0.96011 1.70181 1.13807 1.27262 1.44696 0.84608 0.76851 0.76126 0.78777 1.18745 1.19559 1.17735 1.20403 0.93112 0.98951 1.09849 1.20832 0.92922 0.97158 0.96605 1.22047 1.00244 0.94839 0.89970 1.22328 0.96949 1.01746 0.97472 1.21794 0.92048 0.94310 0.85842 0.92582 1.86462 1.78897 1.56225 1.16608 0.91739 0.92512 0.92365 0.92961 0.93488 0.92741 0.94130 0.89229 0.93168 0.89127 0.84648 0.86636 0.91843 0.87042 0.84147 0.91644 0.94447 0.90697 0.91695 0.76116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.36 71.98 0.60 -1.35 16 2 C -0.05 -0.94 0.60 -52.13 -0.03 -0.97 16 3 C -0.12 -2.46 7.87 71.98 0.57 -1.90 16 4 C 0.07 1.16 4.14 86.33 0.36 1.52 16 5 N -0.54 -11.66 4.08 -900.91 -3.68 -15.34 16 6 C 0.12 2.58 5.43 85.55 0.46 3.04 16 7 C -0.16 -4.70 4.14 -19.84 -0.08 -4.78 16 8 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 9 C -0.24 -10.66 9.17 22.39 0.21 -10.46 16 10 C 0.12 5.76 6.65 22.58 0.15 5.91 16 11 O -0.23 -14.10 9.76 -22.69 -0.22 -14.32 16 12 C -0.41 -24.21 9.49 67.92 0.64 -23.57 16 13 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 14 C -0.02 -1.28 5.49 84.83 0.47 -0.82 16 15 N -0.92 -56.85 13.67 21.61 0.30 -56.55 16 16 Si 1.02 43.16 29.55 68.60 2.03 45.19 16 17 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 18 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 19 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 20 C -0.20 -8.56 9.99 22.39 0.22 -8.34 16 21 C -0.06 -1.83 7.76 22.25 0.17 -1.66 16 22 C 0.06 1.31 4.57 86.33 0.39 1.70 16 23 C -0.15 -3.01 5.37 30.65 0.16 -2.85 16 24 C 0.12 2.10 2.63 30.68 0.08 2.18 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 O -0.57 -9.98 12.01 -148.98 -1.79 -11.77 16 27 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.06 0.94 7.76 -2.39 -0.02 0.93 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.05 1.24 6.01 -2.39 -0.01 1.23 16 31 H 0.05 1.00 7.64 -2.39 -0.02 0.98 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 34 H 0.09 1.37 8.12 -2.39 -0.02 1.36 16 35 H 0.05 0.99 8.02 -2.38 -0.02 0.97 16 36 H 0.09 1.82 8.08 -2.38 -0.02 1.80 16 37 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 38 H 0.12 5.19 5.64 -2.91 -0.02 5.18 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 40 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.14 3.60 8.06 -2.91 -0.02 3.58 16 42 H 0.07 1.90 5.63 -2.39 -0.01 1.88 16 43 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 1.57 6.58 -2.39 -0.02 1.56 16 46 H 0.39 3.91 9.09 -74.06 -0.67 3.23 16 Total: -1.00 -70.29 359.00 1.53 -68.76 By element: Atomic # 1 Polarization: 27.56 SS G_CDS: 0.30 Total: 27.86 kcal Atomic # 6 Polarization: -48.43 SS G_CDS: 4.59 Total: -43.83 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -3.38 Total: -71.89 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -2.01 Total: -26.08 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -70.29 1.53 -68.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000782577310.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.503 kcal (2) G-P(sol) polarization free energy of solvation -70.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds