Wall clock time and date at job start Fri Apr 10 2020 21:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47130 * 2 1 4 4 H 1.09001 * 109.47332 * 305.00238 * 3 2 1 5 5 C 1.53002 * 109.46967 * 185.00378 * 3 2 1 6 6 C 1.53005 * 109.46850 * 175.00259 * 5 3 2 7 7 O 1.42900 * 109.46681 * 179.97438 * 6 5 3 8 8 N 1.46494 * 109.46766 * 65.00341 * 3 2 1 9 9 C 1.34773 * 120.00147 * 274.99832 * 8 3 2 10 10 O 1.21281 * 120.00062 * 359.97438 * 9 8 3 11 11 C 1.50697 * 120.00216 * 180.02562 * 9 8 3 12 12 C 1.53005 * 109.47383 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.47070 * 305.00242 * 12 11 9 14 14 C 1.50703 * 109.46972 * 64.99852 * 12 11 9 15 15 H 1.07997 * 120.00244 * 234.68555 * 14 12 11 16 16 C 1.37877 * 119.99480 * 54.68342 * 14 12 11 17 17 N 1.31512 * 120.00503 * 4.89562 * 16 14 12 18 18 Si 1.86806 * 119.99520 * 184.89525 * 16 14 12 19 19 H 1.48497 * 109.47023 * 90.00264 * 18 16 14 20 20 H 1.48499 * 109.46939 * 210.00145 * 18 16 14 21 21 H 1.48497 * 109.47389 * 330.00246 * 18 16 14 22 22 C 1.50694 * 109.47053 * 185.00154 * 12 11 9 23 23 C 1.38243 * 119.99556 * 151.47965 * 22 12 11 24 24 C 1.38236 * 119.99376 * 179.78773 * 23 22 12 25 25 C 1.38235 * 120.00282 * 0.43618 * 24 23 22 26 26 C 1.38234 * 120.00072 * 359.81308 * 25 24 23 27 27 C 1.38229 * 120.00374 * 331.74651 * 22 12 11 28 28 H 1.09006 * 109.47024 * 299.99623 * 1 2 3 29 29 H 1.08996 * 109.47381 * 59.99927 * 1 2 3 30 30 H 1.09000 * 109.46712 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.47024 * 240.00377 * 2 1 3 32 32 H 1.09004 * 109.47783 * 120.00567 * 2 1 3 33 33 H 1.09008 * 109.46995 * 295.00246 * 5 3 2 34 34 H 1.08997 * 109.47571 * 55.00035 * 5 3 2 35 35 H 1.08998 * 109.46650 * 299.99433 * 6 5 3 36 36 H 1.08998 * 109.47050 * 60.00078 * 6 5 3 37 37 H 0.96702 * 113.99688 * 179.97438 * 7 6 5 38 38 H 0.97007 * 119.99909 * 95.00369 * 8 3 2 39 39 H 1.09000 * 109.47510 * 299.99952 * 11 9 8 40 40 H 1.09009 * 109.47119 * 59.99991 * 11 9 8 41 41 H 0.96998 * 120.00436 * 179.97438 * 17 16 14 42 42 H 1.07994 * 120.00386 * 359.97438 * 23 22 12 43 43 H 1.08000 * 119.99796 * 180.27453 * 24 23 22 44 44 H 1.08005 * 119.99855 * 179.84068 * 25 24 23 45 45 H 1.07999 * 119.99812 * 180.02562 * 26 25 24 46 46 H 1.08003 * 119.99803 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4443 -0.1258 6 6 4.0645 2.8851 -0.2512 7 8 5.4887 2.8867 -0.3681 8 7 1.6525 2.0974 1.2518 9 6 0.4352 2.6643 1.3671 10 8 -0.3392 2.6327 0.4343 11 6 0.0368 3.3384 2.6546 12 6 -1.3821 3.8952 2.5210 13 1 -1.4345 4.5516 1.6524 14 6 -2.3544 2.7566 2.3496 15 1 -3.0244 2.7415 1.5027 16 6 -2.3885 1.7343 3.2741 17 7 -1.6420 1.7997 4.3548 18 14 -3.4953 0.2562 2.9914 19 1 -2.7495 -0.7837 2.2381 20 1 -3.9281 -0.2956 4.3004 21 1 -4.6880 0.6728 2.2111 22 6 -1.7347 4.6746 3.7616 23 6 -2.6351 5.7210 3.6878 24 6 -2.9619 6.4331 4.8267 25 6 -2.3816 6.1047 6.0376 26 6 -1.4773 5.0616 6.1104 27 6 -1.1538 4.3468 4.9723 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 4.0030 0.9835 0.7596 34 1 3.8571 0.8801 -1.0114 35 1 3.6263 3.3457 -1.1365 36 1 3.7723 3.4493 0.6345 37 1 5.8754 3.7691 -0.4519 38 1 2.2721 2.1231 1.9978 39 1 0.0681 2.6144 3.4688 40 1 0.7282 4.1540 2.8668 41 1 -1.6663 1.0806 5.0054 42 1 -3.0854 5.9802 2.7411 43 1 -3.6686 7.2478 4.7699 44 1 -2.6350 6.6628 6.9269 45 1 -1.0243 4.8048 7.0565 46 1 -0.4474 3.5318 5.0292 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356385549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:08 Heat of formation + Delta-G solvation = -75.709493 kcal Electronic energy + Delta-G solvation = -26023.941046 eV Core-core repulsion = 22491.964457 eV Total energy + Delta-G solvation = -3531.976590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.41192 -38.20741 -37.17974 -35.61180 -34.10151 -31.86443 -31.00645 -30.79298 -29.81093 -28.34245 -26.07349 -25.18940 -22.68868 -21.72448 -21.49968 -20.67395 -19.99187 -19.17935 -17.50253 -16.57559 -16.18696 -15.79380 -15.33098 -15.05891 -14.80128 -14.72716 -13.93526 -13.84851 -13.78343 -13.22693 -13.13263 -12.79474 -12.48808 -12.40826 -12.21436 -11.80333 -11.62746 -11.47696 -11.39081 -11.17645 -10.92599 -10.86783 -10.82538 -10.69517 -10.48125 -10.27816 -10.15577 -10.06456 -9.93536 -9.28550 -9.16758 -8.74478 -8.38262 -8.34829 -7.80213 -7.43602 -5.97115 -4.06582 2.49952 2.58731 3.31160 3.37300 3.42691 3.72016 3.89056 4.03357 4.43682 4.95648 4.97893 5.01705 5.15069 5.25701 5.40568 5.47613 5.56275 5.72451 5.81475 5.84547 5.90170 5.92266 5.98666 6.02734 6.20331 6.28301 6.37592 6.41552 6.46533 6.59114 6.63362 6.72432 6.78200 7.06272 7.13151 7.14853 7.17365 7.27034 7.47123 7.48424 7.54893 7.69978 7.93888 8.08955 8.18544 8.28738 8.36193 8.90444 9.25126 9.56624 10.96893 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012931 B = 0.005032 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.885789 B = 5563.449528 C = 7046.534505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C 0.150 3.850 4 H 0.085 0.915 5 C -0.125 4.125 6 C 0.075 3.925 7 O -0.579 6.579 8 N -0.745 5.745 9 C 0.524 3.476 10 O -0.521 6.521 11 C -0.140 4.140 12 C 0.089 3.911 13 H 0.036 0.964 14 C -0.467 4.467 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.889 5.889 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.142 4.142 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.077 0.923 29 H 0.056 0.944 30 H 0.036 0.964 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.378 0.622 38 H 0.392 0.608 39 H 0.131 0.869 40 H 0.050 0.950 41 H 0.260 0.740 42 H 0.105 0.895 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.250 2.342 -3.148 10.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.044 3.956 4 H 0.103 0.897 5 C -0.163 4.163 6 C -0.002 4.002 7 O -0.384 6.384 8 N -0.399 5.399 9 C 0.313 3.687 10 O -0.395 6.395 11 C -0.180 4.180 12 C 0.070 3.930 13 H 0.055 0.945 14 C -0.505 4.505 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.529 5.529 18 Si 0.715 3.285 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.027 4.027 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.087 4.087 28 H 0.096 0.904 29 H 0.075 0.925 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.225 0.775 39 H 0.148 0.852 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 9.571 1.555 -3.649 10.360 hybrid contribution -0.464 -0.435 0.425 0.765 sum 9.107 1.120 -3.224 9.726 Atomic orbital electron populations 1.21843 0.94122 1.00183 1.04404 1.21914 0.97729 0.95854 1.01242 1.20788 0.92046 0.93742 0.88993 0.89726 1.21801 0.94853 0.96084 1.03560 1.22209 0.80286 0.97615 1.00128 1.86446 1.20996 1.33993 1.96982 1.46307 1.17960 1.60132 1.15549 1.21058 0.79714 0.77388 0.90582 1.90620 1.49928 1.58188 1.40773 1.21937 0.98909 1.00954 0.96176 1.17621 0.91318 0.93829 0.90250 0.94526 1.20957 1.18777 1.03220 1.07504 0.92337 1.24850 0.96000 0.98147 0.94779 1.69671 1.40794 1.32533 1.09910 0.86654 0.81226 0.83337 0.77251 1.20663 1.21531 1.20057 1.20352 0.93635 0.91454 0.97306 1.20899 0.99490 0.97179 0.97472 1.20797 1.01117 1.00672 0.93416 1.20763 1.00151 0.99573 0.96778 1.21048 0.99747 0.97072 0.98298 1.21358 0.99880 0.96250 0.91186 0.90440 0.92489 0.94510 0.92183 0.92253 0.90855 0.90278 0.93642 0.93096 0.77545 0.77463 0.85155 0.93161 0.92986 0.87705 0.88135 0.88336 0.88126 0.84293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.52 37.16 0.32 -2.37 16 2 C -0.13 -1.85 5.61 -26.73 -0.15 -2.00 16 3 C 0.15 2.07 2.26 -67.93 -0.15 1.92 16 4 H 0.08 1.30 7.58 -51.93 -0.39 0.91 16 5 C -0.12 -1.40 5.12 -26.73 -0.14 -1.54 16 6 C 0.08 0.81 6.93 37.16 0.26 1.07 16 7 O -0.58 -6.09 13.66 -35.23 -0.48 -6.57 16 8 N -0.74 -11.41 4.48 -53.81 -0.24 -11.65 16 9 C 0.52 10.31 6.14 -10.99 -0.07 10.24 16 10 O -0.52 -11.89 12.12 5.56 0.07 -11.82 16 11 C -0.14 -2.86 4.07 -27.88 -0.11 -2.98 16 12 C 0.09 2.08 1.97 -92.92 -0.18 1.89 16 13 H 0.04 0.87 7.91 -51.93 -0.41 0.46 16 14 C -0.47 -12.19 7.27 -34.44 -0.25 -12.44 16 15 H 0.06 1.63 7.82 -52.49 -0.41 1.22 16 16 C 0.06 1.59 5.12 -17.82 -0.09 1.50 16 17 N -0.89 -22.26 7.99 55.43 0.44 -21.82 16 18 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 19 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 C -0.03 -0.60 4.69 -104.63 -0.49 -1.09 16 23 C -0.13 -2.80 9.71 -39.58 -0.38 -3.18 16 24 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 25 C -0.15 -2.89 10.05 -39.58 -0.40 -3.29 16 26 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 27 C -0.07 -1.48 7.45 -39.59 -0.30 -1.77 16 28 H 0.08 1.69 5.65 -51.93 -0.29 1.40 16 29 H 0.06 1.06 7.85 -51.93 -0.41 0.65 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.54 7.75 -51.93 -0.40 0.14 16 37 H 0.38 2.30 9.12 45.56 0.42 2.72 16 38 H 0.39 5.17 8.60 -40.82 -0.35 4.82 16 39 H 0.13 2.87 4.71 -51.93 -0.24 2.62 16 40 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 41 H 0.26 6.42 8.31 -40.82 -0.34 6.09 16 42 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.57 8.06 -52.48 -0.42 1.15 16 45 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.14 3.06 5.18 -52.48 -0.27 2.79 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -28.98 363.81 -9.24 -38.23 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -6.56 Total: 12.30 kcal Atomic # 6 Polarization: -17.44 SS G_CDS: -2.93 Total: -20.38 kcal Atomic # 7 Polarization: -33.67 SS G_CDS: 0.20 Total: -33.47 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.41 Total: -18.39 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.98 -9.24 -38.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356385549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.484 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds