Wall clock time and date at job start Fri Apr 10 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47319 * 2 1 4 4 H 1.09004 * 109.47095 * 305.00280 * 3 2 1 5 5 C 1.52999 * 109.47406 * 184.99955 * 3 2 1 6 6 C 1.52995 * 109.47295 * 174.99896 * 5 3 2 7 7 O 1.42901 * 109.47192 * 179.97438 * 6 5 3 8 8 N 1.46503 * 109.47068 * 65.00018 * 3 2 1 9 9 C 1.34779 * 120.00213 * 275.00033 * 8 3 2 10 10 O 1.21289 * 119.99539 * 0.02562 * 9 8 3 11 11 C 1.50695 * 120.00317 * 179.97438 * 9 8 3 12 12 C 1.52998 * 109.47031 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47315 * 55.00567 * 12 11 9 14 14 C 1.50702 * 109.47252 * 294.99742 * 12 11 9 15 15 H 1.07996 * 119.99657 * 325.84614 * 14 12 11 16 16 C 1.37874 * 119.99561 * 145.84617 * 14 12 11 17 17 N 1.31507 * 120.00586 * 6.12139 * 16 14 12 18 18 Si 1.86805 * 119.99485 * 186.12506 * 16 14 12 19 19 H 1.48498 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47143 * 120.00205 * 18 16 14 21 21 H 1.48503 * 109.46790 * 239.99799 * 18 16 14 22 22 C 1.50704 * 109.46948 * 175.00284 * 12 11 9 23 23 C 1.38237 * 120.00180 * 63.46669 * 22 12 11 24 24 C 1.38234 * 119.99768 * 179.79006 * 23 22 12 25 25 C 1.38229 * 120.00203 * 0.44039 * 24 23 22 26 26 C 1.38236 * 120.00188 * 359.81593 * 25 24 23 27 27 C 1.38234 * 119.99908 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46864 * 300.00087 * 1 2 3 30 30 H 1.09001 * 109.46863 * 59.99702 * 1 2 3 31 31 H 1.08999 * 109.46864 * 239.99913 * 2 1 3 32 32 H 1.09000 * 109.47337 * 120.00060 * 2 1 3 33 33 H 1.09000 * 109.47118 * 295.00229 * 5 3 2 34 34 H 1.09005 * 109.46916 * 55.00118 * 5 3 2 35 35 H 1.09000 * 109.47310 * 300.00216 * 6 5 3 36 36 H 1.09005 * 109.46957 * 60.00247 * 6 5 3 37 37 H 0.96704 * 113.99911 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00124 * 95.00328 * 8 3 2 39 39 H 1.09002 * 109.47118 * 300.00519 * 11 9 8 40 40 H 1.09003 * 109.47107 * 59.99850 * 11 9 8 41 41 H 0.96998 * 120.00544 * 179.97438 * 17 16 14 42 42 H 1.07997 * 119.99847 * 0.02562 * 23 22 12 43 43 H 1.07998 * 119.99915 * 180.27263 * 24 23 22 44 44 H 1.08004 * 120.00168 * 179.83456 * 25 24 23 45 45 H 1.07999 * 120.00533 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1257 6 6 4.0645 2.8850 -0.2511 7 8 5.4888 2.8867 -0.3679 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6645 1.3670 10 8 -0.3395 2.6320 0.4344 11 6 0.0363 3.3377 2.6549 12 6 -1.3829 3.8935 2.5215 13 1 -2.0597 3.0936 2.2216 14 6 -1.3999 4.9829 1.4803 15 1 -0.5429 5.6291 1.3609 16 6 -2.5096 5.1544 0.6802 17 7 -3.5970 4.4494 0.9040 18 14 -2.4684 6.3882 -0.7218 19 1 -1.1388 7.0482 -0.7614 20 1 -2.7111 5.6852 -2.0071 21 1 -3.5229 7.4123 -0.5110 22 6 -1.8279 4.4579 3.8461 23 6 -1.1618 5.5369 4.3966 24 6 -1.5728 6.0572 5.6096 25 6 -2.6440 5.4928 6.2764 26 6 -3.3068 4.4105 5.7285 27 6 -2.8986 3.8928 4.5135 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0030 0.9836 0.7596 34 1 3.8571 0.8800 -1.0114 35 1 3.6264 3.3457 -1.1365 36 1 3.7723 3.4493 0.6345 37 1 5.8755 3.7691 -0.4518 38 1 2.2720 2.1232 1.9978 39 1 0.0674 2.6130 3.4685 40 1 0.7278 4.1530 2.8680 41 1 -4.3778 4.5704 0.3414 42 1 -0.3228 5.9757 3.8772 43 1 -1.0552 6.9029 6.0375 44 1 -2.9634 5.8976 7.2254 45 1 -4.1435 3.9692 6.2496 46 1 -3.4166 3.0475 4.0851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356385550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:12 Heat of formation + Delta-G solvation = -82.057685 kcal Electronic energy + Delta-G solvation = -25623.302810 eV Core-core repulsion = 22091.050942 eV Total energy + Delta-G solvation = -3532.251868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.49625 -38.32071 -37.21453 -35.66279 -33.87876 -32.04887 -31.32867 -30.84871 -29.99715 -28.67913 -25.96221 -25.09645 -22.83722 -21.80348 -21.63799 -20.83498 -20.05838 -19.21764 -17.50852 -16.58293 -16.40198 -15.91050 -15.61874 -15.05239 -14.89262 -14.45353 -14.14104 -14.02296 -13.80353 -13.41780 -13.19868 -12.87801 -12.54900 -12.49031 -12.23978 -12.05113 -11.81566 -11.63656 -11.56601 -11.27351 -11.00083 -10.89877 -10.83559 -10.71581 -10.56583 -10.47173 -10.24713 -10.06943 -10.03725 -9.43291 -9.03969 -8.79853 -8.47405 -8.30126 -8.03495 -7.59275 -5.92757 -3.91855 2.29853 2.35923 3.36759 3.44324 3.45675 3.59289 3.73862 4.01243 4.52179 4.76330 4.93755 4.96960 5.09513 5.37012 5.37854 5.41401 5.49431 5.64860 5.67042 5.73716 5.76061 5.80294 5.85534 5.91983 6.06533 6.11491 6.17856 6.23074 6.24925 6.30464 6.42221 6.46244 6.55361 6.81342 6.83221 6.92483 7.02189 7.06311 7.32061 7.45918 7.46877 7.54400 7.86769 7.96226 8.06098 8.15730 8.39951 9.07904 9.15100 9.70066 11.17467 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011507 B = 0.004582 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.811860 B = 6109.866113 C = 6797.172522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C 0.148 3.852 4 H 0.088 0.912 5 C -0.124 4.124 6 C 0.074 3.926 7 O -0.579 6.579 8 N -0.747 5.747 9 C 0.512 3.488 10 O -0.489 6.489 11 C -0.124 4.124 12 C 0.081 3.919 13 H 0.072 0.928 14 C -0.490 4.490 15 H 0.050 0.950 16 C 0.079 3.921 17 N -0.880 5.880 18 Si 0.885 3.115 19 H -0.276 1.276 20 H -0.285 1.285 21 H -0.288 1.288 22 C -0.020 4.020 23 C -0.116 4.116 24 C -0.132 4.132 25 C -0.156 4.156 26 C -0.128 4.128 27 C -0.119 4.119 28 H 0.039 0.961 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.072 0.928 34 H 0.079 0.921 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.379 0.621 38 H 0.391 0.609 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.258 0.742 42 H 0.112 0.888 43 H 0.105 0.895 44 H 0.103 0.897 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.974 -4.790 3.486 13.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C 0.043 3.957 4 H 0.106 0.894 5 C -0.162 4.162 6 C -0.004 4.004 7 O -0.385 6.385 8 N -0.402 5.402 9 C 0.299 3.701 10 O -0.359 6.359 11 C -0.164 4.164 12 C 0.062 3.938 13 H 0.090 0.910 14 C -0.527 4.527 15 H 0.068 0.932 16 C -0.124 4.124 17 N -0.518 5.518 18 Si 0.714 3.286 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.215 1.215 22 C -0.021 4.021 23 C -0.134 4.134 24 C -0.150 4.150 25 C -0.174 4.174 26 C -0.146 4.146 27 C -0.137 4.137 28 H 0.058 0.942 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.225 0.775 38 H 0.224 0.776 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.130 0.870 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 11.070 -5.479 2.741 12.652 hybrid contribution 0.204 1.485 -0.490 1.577 sum 11.273 -3.995 2.251 12.170 Atomic orbital electron populations 1.21802 0.94339 1.00120 1.03977 1.21914 0.97508 0.95910 1.01409 1.20819 0.92252 0.93609 0.89030 0.89429 1.21785 0.94711 0.96184 1.03504 1.22214 0.80292 0.97503 1.00352 1.86428 1.20991 1.34081 1.96998 1.46324 1.17940 1.60299 1.15679 1.20820 0.80580 0.77802 0.90914 1.90767 1.50123 1.55259 1.39793 1.21803 1.02025 0.99147 0.93423 1.17829 0.89734 0.97508 0.88753 0.91002 1.20693 1.00697 1.15296 1.16034 0.93219 1.24788 0.95482 0.95422 0.96681 1.69913 1.02676 1.40570 1.38607 0.86658 0.77668 0.81113 0.83154 1.20058 1.21066 1.21451 1.20754 0.93167 0.93599 0.94591 1.20939 1.00732 0.96954 0.94768 1.20968 0.97862 0.99814 0.96346 1.20790 0.98179 0.98409 1.00059 1.20983 0.99607 0.97374 0.96654 1.21089 0.97750 1.00615 0.94261 0.94174 0.91704 0.92070 0.91894 0.92269 0.90939 0.90222 0.93473 0.93087 0.77462 0.77639 0.91829 0.90743 0.93227 0.86971 0.87717 0.87839 0.87673 0.86871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 8.51 37.16 0.32 -1.95 16 2 C -0.13 -1.61 5.61 -26.73 -0.15 -1.76 16 3 C 0.15 1.93 2.26 -67.93 -0.15 1.77 16 4 H 0.09 1.36 7.58 -51.93 -0.39 0.97 16 5 C -0.12 -1.32 5.12 -26.73 -0.14 -1.46 16 6 C 0.07 0.81 6.93 37.15 0.26 1.07 16 7 O -0.58 -6.15 13.66 -35.23 -0.48 -6.63 16 8 N -0.75 -10.39 4.48 -53.80 -0.24 -10.63 16 9 C 0.51 9.56 6.15 -10.99 -0.07 9.49 16 10 O -0.49 -11.32 12.12 5.55 0.07 -11.26 16 11 C -0.12 -2.30 4.95 -27.89 -0.14 -2.44 16 12 C 0.08 1.88 1.67 -92.92 -0.16 1.73 16 13 H 0.07 1.93 6.98 -51.93 -0.36 1.57 16 14 C -0.49 -12.90 6.37 -34.44 -0.22 -13.12 16 15 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 16 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 17 N -0.88 -25.64 12.87 55.43 0.71 -24.93 16 18 Si 0.89 22.12 29.54 -169.99 -5.02 17.09 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 22 C -0.02 -0.45 4.77 -104.62 -0.50 -0.95 16 23 C -0.12 -2.32 8.86 -39.58 -0.35 -2.67 16 24 C -0.13 -2.35 10.05 -39.59 -0.40 -2.75 16 25 C -0.16 -2.72 10.05 -39.59 -0.40 -3.11 16 26 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 27 C -0.12 -2.50 9.67 -39.58 -0.38 -2.88 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 1.17 5.64 -51.93 -0.29 0.88 16 30 H 0.06 1.07 7.85 -51.93 -0.41 0.66 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.05 0.56 7.75 -51.93 -0.40 0.15 16 37 H 0.38 2.43 9.12 45.56 0.42 2.84 16 38 H 0.39 4.38 8.60 -40.82 -0.35 4.03 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 1.29 7.78 -51.93 -0.40 0.88 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.11 2.16 7.76 -52.49 -0.41 1.75 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 44 H 0.10 1.50 8.06 -52.48 -0.42 1.08 16 45 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 46 H 0.11 2.40 7.95 -52.49 -0.42 1.99 16 LS Contribution 374.77 15.07 5.65 5.65 Total: -1.00 -32.07 374.77 -9.08 -41.15 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -6.80 Total: 9.22 kcal Atomic # 6 Polarization: -16.70 SS G_CDS: -2.97 Total: -19.67 kcal Atomic # 7 Polarization: -36.03 SS G_CDS: 0.47 Total: -35.56 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: -0.41 Total: -17.89 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.07 -9.08 -41.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356385550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.905 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds