Wall clock time and date at job start Fri Apr 10 2020 21:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47319 * 2 1 4 4 H 1.09004 * 109.47095 * 305.00280 * 3 2 1 5 5 C 1.52999 * 109.47406 * 184.99955 * 3 2 1 6 6 C 1.52995 * 109.47295 * 174.99896 * 5 3 2 7 7 O 1.42901 * 109.47192 * 179.97438 * 6 5 3 8 8 N 1.46503 * 109.47068 * 65.00018 * 3 2 1 9 9 C 1.34779 * 120.00213 * 275.00033 * 8 3 2 10 10 O 1.21289 * 119.99539 * 0.02562 * 9 8 3 11 11 C 1.50695 * 120.00317 * 179.97438 * 9 8 3 12 12 C 1.52998 * 109.47031 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47315 * 55.00567 * 12 11 9 14 14 C 1.50702 * 109.47252 * 294.99742 * 12 11 9 15 15 H 1.07996 * 119.99657 * 325.84614 * 14 12 11 16 16 C 1.37874 * 119.99561 * 145.84617 * 14 12 11 17 17 N 1.31507 * 120.00586 * 6.12139 * 16 14 12 18 18 Si 1.86805 * 119.99485 * 186.12506 * 16 14 12 19 19 H 1.48498 * 109.47137 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47143 * 120.00205 * 18 16 14 21 21 H 1.48503 * 109.46790 * 239.99799 * 18 16 14 22 22 C 1.50704 * 109.46948 * 175.00284 * 12 11 9 23 23 C 1.38237 * 120.00180 * 63.46669 * 22 12 11 24 24 C 1.38234 * 119.99768 * 179.79006 * 23 22 12 25 25 C 1.38229 * 120.00203 * 0.44039 * 24 23 22 26 26 C 1.38236 * 120.00188 * 359.81593 * 25 24 23 27 27 C 1.38234 * 119.99908 * 359.97438 * 26 25 24 28 28 H 1.08998 * 109.47361 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46864 * 300.00087 * 1 2 3 30 30 H 1.09001 * 109.46863 * 59.99702 * 1 2 3 31 31 H 1.08999 * 109.46864 * 239.99913 * 2 1 3 32 32 H 1.09000 * 109.47337 * 120.00060 * 2 1 3 33 33 H 1.09000 * 109.47118 * 295.00229 * 5 3 2 34 34 H 1.09005 * 109.46916 * 55.00118 * 5 3 2 35 35 H 1.09000 * 109.47310 * 300.00216 * 6 5 3 36 36 H 1.09005 * 109.46957 * 60.00247 * 6 5 3 37 37 H 0.96704 * 113.99911 * 179.97438 * 7 6 5 38 38 H 0.96997 * 120.00124 * 95.00328 * 8 3 2 39 39 H 1.09002 * 109.47118 * 300.00519 * 11 9 8 40 40 H 1.09003 * 109.47107 * 59.99850 * 11 9 8 41 41 H 0.96998 * 120.00544 * 179.97438 * 17 16 14 42 42 H 1.07997 * 119.99847 * 0.02562 * 23 22 12 43 43 H 1.07998 * 119.99915 * 180.27263 * 24 23 22 44 44 H 1.08004 * 120.00168 * 179.83456 * 25 24 23 45 45 H 1.07999 * 120.00533 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00535 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5649 1.4443 -0.1257 6 6 4.0645 2.8850 -0.2511 7 8 5.4888 2.8867 -0.3679 8 7 1.6525 2.0975 1.2518 9 6 0.4352 2.6645 1.3670 10 8 -0.3395 2.6320 0.4344 11 6 0.0363 3.3377 2.6549 12 6 -1.3829 3.8935 2.5215 13 1 -2.0597 3.0936 2.2216 14 6 -1.3999 4.9829 1.4803 15 1 -0.5429 5.6291 1.3609 16 6 -2.5096 5.1544 0.6802 17 7 -3.5970 4.4494 0.9040 18 14 -2.4684 6.3882 -0.7218 19 1 -1.1388 7.0482 -0.7614 20 1 -2.7111 5.6852 -2.0071 21 1 -3.5229 7.4123 -0.5110 22 6 -1.8279 4.4579 3.8461 23 6 -1.1618 5.5369 4.3966 24 6 -1.5728 6.0572 5.6096 25 6 -2.6440 5.4928 6.2764 26 6 -3.3068 4.4105 5.7285 27 6 -2.8986 3.8928 4.5135 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.0030 0.9836 0.7596 34 1 3.8571 0.8800 -1.0114 35 1 3.6264 3.3457 -1.1365 36 1 3.7723 3.4493 0.6345 37 1 5.8755 3.7691 -0.4518 38 1 2.2720 2.1232 1.9978 39 1 0.0674 2.6130 3.4685 40 1 0.7278 4.1530 2.8680 41 1 -4.3778 4.5704 0.3414 42 1 -0.3228 5.9757 3.8772 43 1 -1.0552 6.9029 6.0375 44 1 -2.9634 5.8976 7.2254 45 1 -4.1435 3.9692 6.2496 46 1 -3.4166 3.0475 4.0851 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356385550.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:12 Heat of formation + Delta-G solvation = -103.430983 kcal Electronic energy + Delta-G solvation = -25624.229626 eV Core-core repulsion = 22091.050942 eV Total energy + Delta-G solvation = -3533.178684 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.89879 -39.80147 -38.22976 -36.81829 -35.63557 -33.59297 -32.99791 -31.89647 -31.48706 -30.16525 -27.59679 -26.48211 -24.50157 -23.13955 -22.78434 -22.07776 -21.39679 -20.80958 -18.54724 -18.30784 -17.88146 -17.21914 -16.96048 -16.45867 -16.35150 -15.85168 -15.64792 -15.42958 -15.00103 -14.85844 -14.41769 -14.28861 -14.10444 -13.94473 -13.58792 -13.52761 -13.35467 -13.15860 -12.87580 -12.73151 -12.51212 -12.46882 -12.33773 -12.04214 -11.90315 -11.81011 -11.68781 -11.63724 -11.28936 -10.91988 -10.89772 -10.55531 -10.25126 -9.74268 -9.53044 -9.17039 -8.02890 -6.04501 0.79058 0.85772 1.34318 1.38218 1.44958 2.11147 2.46497 2.49011 3.18819 3.20264 3.38243 3.99750 4.04224 4.14630 4.26556 4.27906 4.30436 4.36770 4.42843 4.43851 4.55323 4.57361 4.67009 4.68733 4.77081 4.81471 4.94444 5.00303 5.01246 5.03107 5.07911 5.13717 5.23236 5.33513 5.39778 5.51996 5.55421 5.66838 5.79633 5.82748 5.85135 5.97307 6.19596 6.44190 6.48418 6.85010 6.90127 7.03914 7.58268 7.74558 9.06999 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011507 B = 0.004582 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2432.811860 B = 6109.866113 C = 6797.172522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.122 4.122 3 C 0.149 3.851 4 H 0.057 0.943 5 C -0.113 4.113 6 C 0.075 3.925 7 O -0.589 6.589 8 N -0.725 5.725 9 C 0.512 3.488 10 O -0.543 6.543 11 C -0.118 4.118 12 C 0.084 3.916 13 H 0.023 0.977 14 C -0.479 4.479 15 H 0.047 0.953 16 C 0.025 3.975 17 N -0.917 5.917 18 Si 0.932 3.068 19 H -0.265 1.265 20 H -0.294 1.294 21 H -0.285 1.285 22 C -0.045 4.045 23 C -0.128 4.128 24 C -0.126 4.126 25 C -0.149 4.149 26 C -0.129 4.129 27 C -0.144 4.144 28 H 0.054 0.946 29 H 0.034 0.966 30 H 0.031 0.969 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.037 0.963 36 H 0.051 0.949 37 H 0.396 0.604 38 H 0.408 0.592 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.252 0.748 42 H 0.116 0.884 43 H 0.140 0.860 44 H 0.143 0.857 45 H 0.130 0.870 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.442 -4.186 5.555 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.044 3.956 4 H 0.076 0.924 5 C -0.151 4.151 6 C -0.003 4.003 7 O -0.397 6.397 8 N -0.381 5.381 9 C 0.299 3.701 10 O -0.418 6.418 11 C -0.158 4.158 12 C 0.065 3.935 13 H 0.042 0.958 14 C -0.517 4.517 15 H 0.065 0.935 16 C -0.174 4.174 17 N -0.557 5.557 18 Si 0.760 3.240 19 H -0.189 1.189 20 H -0.221 1.221 21 H -0.211 1.211 22 C -0.045 4.045 23 C -0.146 4.146 24 C -0.144 4.144 25 C -0.167 4.167 26 C -0.147 4.147 27 C -0.163 4.163 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.108 0.892 35 H 0.055 0.945 36 H 0.069 0.931 37 H 0.246 0.754 38 H 0.245 0.755 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.061 0.939 42 H 0.134 0.866 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.148 0.852 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 13.613 -4.862 4.836 15.243 hybrid contribution -0.502 1.273 -1.036 1.717 sum 13.111 -3.589 3.799 14.115 Atomic orbital electron populations 1.21719 0.96994 1.00062 1.01061 1.21882 0.94844 0.95806 1.03473 1.20853 0.94026 0.93412 0.87266 0.92430 1.21675 0.92245 0.96427 1.04734 1.22144 0.80698 0.97528 0.99922 1.86379 1.20494 1.35909 1.96957 1.46047 1.16538 1.58745 1.16735 1.20838 0.81396 0.77663 0.90184 1.90762 1.52007 1.57623 1.41392 1.21674 0.99571 1.00245 0.94339 1.17601 0.91433 0.95279 0.89156 0.95835 1.20982 0.99636 1.14934 1.16129 0.93512 1.25437 0.95716 0.97254 0.98945 1.70053 1.03207 1.42708 1.39739 0.85911 0.78035 0.79486 0.80587 1.18924 1.22077 1.21089 1.20601 0.94359 0.95042 0.94522 1.21036 1.01030 0.96528 0.95973 1.21367 0.97714 1.00193 0.95150 1.21255 0.97118 0.97173 1.01134 1.21280 1.00232 0.97639 0.95532 1.21100 0.98150 1.01048 0.95962 0.92679 0.94668 0.95011 0.89632 0.90244 0.89304 0.89223 0.94465 0.93110 0.75415 0.75544 0.89553 0.88866 0.93917 0.86613 0.84180 0.83951 0.85170 0.88951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.54 8.51 71.98 0.61 -3.93 16 2 C -0.12 -2.88 5.61 30.60 0.17 -2.71 16 3 C 0.15 3.76 2.26 44.99 0.10 3.86 16 4 H 0.06 1.84 7.58 -2.39 -0.02 1.82 16 5 C -0.11 -2.14 5.12 30.59 0.16 -1.98 16 6 C 0.07 1.50 6.93 71.98 0.50 2.00 16 7 O -0.59 -11.08 13.66 -148.98 -2.04 -13.11 16 8 N -0.73 -19.61 4.48 -442.52 -1.98 -21.59 16 9 C 0.51 19.55 6.15 87.66 0.54 20.09 16 10 O -0.54 -26.63 12.12 -3.06 -0.04 -26.67 16 11 C -0.12 -4.44 4.95 29.85 0.15 -4.29 16 12 C 0.08 4.10 1.67 -12.28 -0.02 4.08 16 13 H 0.02 1.36 6.98 -2.39 -0.02 1.34 16 14 C -0.48 -26.01 6.37 25.60 0.16 -25.84 16 15 H 0.05 2.50 7.82 -2.91 -0.02 2.48 16 16 C 0.02 1.45 5.45 84.65 0.46 1.91 16 17 N -0.92 -56.43 12.87 21.44 0.28 -56.16 16 18 Si 0.93 46.77 29.54 68.60 2.03 48.79 16 19 H -0.27 -12.65 7.11 99.48 0.71 -11.95 16 20 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 21 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 22 C -0.04 -1.98 4.77 -19.86 -0.09 -2.08 16 23 C -0.13 -4.93 8.86 22.27 0.20 -4.73 16 24 C -0.13 -4.08 10.05 22.27 0.22 -3.86 16 25 C -0.15 -4.63 10.05 22.27 0.22 -4.41 16 26 C -0.13 -4.54 10.05 22.27 0.22 -4.31 16 27 C -0.14 -6.20 9.67 22.27 0.22 -5.99 16 28 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.03 1.33 5.64 -2.39 -0.01 1.31 16 30 H 0.03 1.17 7.85 -2.39 -0.02 1.16 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.05 1.01 7.75 -2.38 -0.02 0.99 16 37 H 0.40 4.19 9.12 -74.05 -0.68 3.51 16 38 H 0.41 8.26 8.60 -92.71 -0.80 7.46 16 39 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.09 3.13 7.78 -2.39 -0.02 3.11 16 41 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.12 4.28 7.76 -2.91 -0.02 4.26 16 43 H 0.14 3.53 8.06 -2.91 -0.02 3.50 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 46 H 0.09 4.22 7.95 -2.91 -0.02 4.20 16 Total: -1.00 -74.15 374.77 1.57 -72.58 By element: Atomic # 1 Polarization: 28.84 SS G_CDS: -0.50 Total: 28.34 kcal Atomic # 6 Polarization: -36.01 SS G_CDS: 3.82 Total: -32.18 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -1.71 Total: -77.75 kcal Atomic # 8 Polarization: -37.71 SS G_CDS: -2.07 Total: -39.78 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -74.15 1.57 -72.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356385550.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.853 kcal (2) G-P(sol) polarization free energy of solvation -74.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds