Wall clock time and date at job start Fri Apr 10 2020 21:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46952 * 2 1 4 4 H 1.09004 * 109.46964 * 54.99789 * 3 2 1 5 5 O 1.42896 * 109.46903 * 294.99949 * 3 2 1 6 6 C 1.52998 * 109.46941 * 175.00183 * 3 2 1 7 7 C 1.52998 * 109.46917 * 185.00280 * 6 3 2 8 8 N 1.46500 * 109.47231 * 180.02562 * 7 6 3 9 9 C 1.34780 * 120.00364 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99617 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00094 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.46796 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47451 * 304.99929 * 12 11 9 14 14 C 1.50696 * 109.47128 * 65.00393 * 12 11 9 15 15 H 1.08001 * 120.00005 * 234.67493 * 14 12 11 16 16 C 1.37876 * 120.00213 * 54.67545 * 14 12 11 17 17 N 1.31513 * 120.00043 * 4.87553 * 16 14 12 18 18 Si 1.86800 * 119.99858 * 184.87109 * 16 14 12 19 19 H 1.48500 * 109.47356 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46978 * 120.00188 * 18 16 14 21 21 H 1.48505 * 109.47424 * 239.99953 * 18 16 14 22 22 C 1.50705 * 109.46918 * 185.00240 * 12 11 9 23 23 C 1.38230 * 120.00330 * 151.48601 * 22 12 11 24 24 C 1.38229 * 120.00379 * 179.78538 * 23 22 12 25 25 C 1.38231 * 119.99712 * 0.44399 * 24 23 22 26 26 C 1.38235 * 120.00180 * 359.81261 * 25 24 23 27 27 C 1.38236 * 120.00012 * 359.97397 * 26 25 24 28 28 H 1.08995 * 109.47146 * 59.99819 * 1 2 3 29 29 H 1.08999 * 109.47187 * 299.99934 * 1 2 3 30 30 H 1.09001 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46907 * 119.99690 * 2 1 3 32 32 H 1.08999 * 109.47187 * 240.00066 * 2 1 3 33 33 H 0.96701 * 114.00423 * 300.00272 * 5 3 2 34 34 H 1.09000 * 109.46938 * 304.99445 * 6 3 2 35 35 H 1.08998 * 109.47491 * 65.00123 * 6 3 2 36 36 H 1.09009 * 109.47039 * 299.99801 * 7 6 3 37 37 H 1.08994 * 109.47889 * 59.99578 * 7 6 3 38 38 H 0.97003 * 119.99636 * 359.97438 * 8 7 6 39 39 H 1.08999 * 109.47349 * 300.00190 * 11 9 8 40 40 H 1.08998 * 109.47242 * 60.00332 * 11 9 8 41 41 H 0.96998 * 119.99772 * 179.97438 * 17 16 14 42 42 H 1.08008 * 119.99476 * 0.02562 * 23 22 12 43 43 H 1.08003 * 120.00404 * 180.27349 * 24 23 22 44 44 H 1.08006 * 119.99806 * 179.82946 * 25 24 23 45 45 H 1.08008 * 120.00145 * 180.02562 * 26 25 24 46 46 H 1.07993 * 120.00129 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8850 0.2511 8 7 5.5245 2.8869 0.3709 9 6 6.1893 4.0530 0.4932 10 8 5.5786 5.1008 0.5038 11 6 7.6911 4.0548 0.6170 12 6 8.1907 5.4955 0.7423 13 1 7.8233 6.0821 -0.0997 14 6 7.6840 6.0927 2.0298 15 1 7.1291 7.0191 2.0137 16 6 7.9286 5.4564 3.2282 17 7 8.6848 4.3809 3.2593 18 14 7.1861 6.1221 4.8077 19 1 6.3806 7.3322 4.5045 20 1 6.3134 5.0875 5.4189 21 1 8.2734 6.4752 5.7555 22 6 9.6977 5.5064 0.7425 23 6 10.3811 6.6088 0.2646 24 6 11.7633 6.6206 0.2689 25 6 12.4623 5.5261 0.7425 26 6 11.7790 4.4214 1.2155 27 6 10.3967 4.4114 1.2153 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0141 1.6542 -2.0139 34 1 3.8571 0.8802 1.0113 35 1 4.0030 0.9837 -0.7597 36 1 3.7722 3.4494 -0.6345 37 1 3.6264 3.3458 1.1364 38 1 6.0129 2.0488 0.3621 39 1 7.9834 3.4909 1.5028 40 1 8.1292 3.5937 -0.2682 41 1 8.8572 3.9334 4.1025 42 1 9.8349 7.4627 -0.1085 43 1 12.2972 7.4838 -0.1004 44 1 13.5423 5.5342 0.7433 45 1 12.3252 3.5664 1.5859 46 1 9.8629 3.5486 1.5852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356441512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:17 Heat of formation + Delta-G solvation = -82.168698 kcal Electronic energy + Delta-G solvation = -24916.903750 eV Core-core repulsion = 21384.647069 eV Total energy + Delta-G solvation = -3532.256682 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.08158 -38.36989 -37.83916 -34.70206 -33.96467 -33.03389 -31.11677 -30.65962 -29.79250 -28.38892 -26.32123 -25.09415 -22.72848 -21.86678 -21.59642 -21.32627 -20.01521 -19.10410 -16.71602 -16.51182 -16.10411 -15.92381 -15.53887 -15.31459 -14.93500 -14.67967 -14.32745 -13.84964 -13.71672 -13.63396 -13.13984 -12.87578 -12.60772 -12.56303 -12.21937 -12.19741 -11.65773 -11.59630 -11.49695 -11.42119 -11.25063 -11.12432 -10.91047 -10.90395 -10.72749 -10.37716 -10.18506 -10.09044 -9.90229 -9.26960 -9.14327 -8.74330 -8.43553 -8.32979 -7.78616 -7.41940 -5.95519 -4.04780 2.51619 2.60320 3.30673 3.38615 3.46683 3.75126 3.82221 4.23206 4.45668 4.53446 4.72887 4.85824 4.99470 5.01788 5.13235 5.27298 5.30815 5.47657 5.56306 5.65354 5.68193 5.82955 5.88133 5.90043 5.95888 5.99456 6.03896 6.16488 6.30450 6.40186 6.48690 6.61303 6.73789 6.79988 7.10188 7.16305 7.19299 7.28574 7.48440 7.50156 7.56559 7.71455 7.95870 8.10720 8.20211 8.30018 8.38228 8.92499 9.26800 9.58341 10.98605 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003297 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.330173 B = 8491.552800 C = 9325.114547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.108 3.892 4 H 0.101 0.899 5 O -0.558 6.558 6 C -0.163 4.163 7 C 0.126 3.874 8 N -0.751 5.751 9 C 0.522 3.478 10 O -0.527 6.527 11 C -0.138 4.138 12 C 0.088 3.912 13 H 0.037 0.963 14 C -0.468 4.468 15 H 0.059 0.941 16 C 0.059 3.941 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.273 1.273 20 H -0.286 1.286 21 H -0.286 1.286 22 C -0.027 4.027 23 C -0.132 4.132 24 C -0.141 4.141 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.069 4.069 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.372 0.628 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.392 0.608 39 H 0.131 0.869 40 H 0.052 0.948 41 H 0.259 0.741 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.101 0.899 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.271 -11.095 -6.913 14.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.119 0.881 5 O -0.363 6.363 6 C -0.201 4.201 7 C 0.001 3.999 8 N -0.406 5.406 9 C 0.310 3.690 10 O -0.401 6.401 11 C -0.179 4.179 12 C 0.068 3.932 13 H 0.055 0.945 14 C -0.505 4.505 15 H 0.078 0.922 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.719 3.281 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.028 4.028 23 C -0.150 4.150 24 C -0.160 4.160 25 C -0.173 4.173 26 C -0.162 4.162 27 C -0.087 4.087 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.219 0.781 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.225 0.775 39 H 0.149 0.851 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.123 0.877 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.985 -9.999 -6.337 13.745 hybrid contribution 0.304 -0.529 0.923 1.106 sum -6.682 -10.528 -5.415 13.594 Atomic orbital electron populations 1.21709 0.95179 1.01313 1.02493 1.22242 0.97096 0.97244 1.02733 1.21924 0.92617 0.92626 0.87974 0.88134 1.86619 1.76832 1.57292 1.15566 1.22522 0.96634 0.97775 1.03149 1.21079 0.81475 0.95284 1.02012 1.46205 1.06621 1.09502 1.78283 1.21146 0.91243 0.82492 0.74097 1.90617 1.70101 1.31444 1.47940 1.21923 0.89159 1.03595 1.03184 1.17635 0.87056 0.91439 0.97025 0.94458 1.21033 1.31146 1.08239 0.90092 0.92238 1.24880 0.94893 0.95434 0.98819 1.69687 1.37511 1.20066 1.25769 0.86532 0.78949 0.79170 0.83443 1.19793 1.21235 1.21248 1.20354 0.97518 0.92207 0.92700 1.20901 0.93585 0.98412 1.02111 1.20794 0.94454 0.97875 1.02848 1.20762 0.98151 0.95073 1.03282 1.21045 0.95349 0.97807 1.01969 1.21359 0.92382 1.00014 0.94939 0.92061 0.92695 0.92982 0.91018 0.91687 0.78089 0.90474 0.91151 0.91603 0.92292 0.77524 0.85129 0.92994 0.93073 0.87655 0.88105 0.88320 0.88110 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.81 37.16 0.36 -0.76 16 2 C -0.16 -1.14 5.61 -26.73 -0.15 -1.29 16 3 C 0.11 1.01 2.97 -26.73 -0.08 0.93 16 4 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 5 O -0.56 -5.72 12.41 -35.23 -0.44 -6.15 16 6 C -0.16 -1.60 5.01 -26.73 -0.13 -1.73 16 7 C 0.13 1.83 5.57 -4.04 -0.02 1.81 16 8 N -0.75 -12.31 5.56 -60.29 -0.33 -12.64 16 9 C 0.52 11.18 7.58 -10.99 -0.08 11.10 16 10 O -0.53 -13.39 14.98 5.56 0.08 -13.31 16 11 C -0.14 -2.98 4.07 -27.88 -0.11 -3.09 16 12 C 0.09 2.13 1.97 -92.92 -0.18 1.95 16 13 H 0.04 0.93 7.91 -51.93 -0.41 0.52 16 14 C -0.47 -12.71 7.27 -34.44 -0.25 -12.96 16 15 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 16 C 0.06 1.57 5.12 -17.82 -0.09 1.48 16 17 N -0.89 -22.79 7.99 55.43 0.44 -22.35 16 18 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 19 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.03 -0.63 4.69 -104.62 -0.49 -1.12 16 23 C -0.13 -2.85 9.71 -39.59 -0.38 -3.23 16 24 C -0.14 -2.75 10.05 -39.59 -0.40 -3.15 16 25 C -0.15 -2.93 10.05 -39.59 -0.40 -3.32 16 26 C -0.14 -2.86 10.05 -39.58 -0.40 -3.26 16 27 C -0.07 -1.51 7.45 -39.58 -0.30 -1.80 16 28 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.37 2.51 9.05 45.56 0.41 2.92 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.07 1.04 7.82 -51.92 -0.41 0.64 16 37 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.39 5.25 8.47 -40.82 -0.35 4.90 16 39 H 0.13 2.97 4.70 -51.93 -0.24 2.72 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 42 H 0.11 2.16 8.06 -52.48 -0.42 1.74 16 43 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 44 H 0.10 1.59 8.06 -52.48 -0.42 1.16 16 45 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 46 H 0.14 3.11 5.18 -52.49 -0.27 2.84 16 LS Contribution 371.36 15.07 5.60 5.60 Total: -1.00 -30.89 371.36 -9.49 -40.38 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -6.71 Total: 10.25 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: -3.11 Total: -18.46 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.11 Total: -34.99 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.35 Total: -19.46 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.89 -9.49 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356441512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.785 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds