Wall clock time and date at job start Fri Apr 10 2020 21:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46952 * 2 1 4 4 H 1.09004 * 109.46964 * 54.99789 * 3 2 1 5 5 O 1.42896 * 109.46903 * 294.99949 * 3 2 1 6 6 C 1.52998 * 109.46941 * 175.00183 * 3 2 1 7 7 C 1.52998 * 109.46917 * 185.00280 * 6 3 2 8 8 N 1.46500 * 109.47231 * 180.02562 * 7 6 3 9 9 C 1.34780 * 120.00364 * 179.97438 * 8 7 6 10 10 O 1.21279 * 119.99617 * 359.97438 * 9 8 7 11 11 C 1.50697 * 120.00094 * 179.97438 * 9 8 7 12 12 C 1.53002 * 109.46796 * 180.02562 * 11 9 8 13 13 H 1.08998 * 109.47451 * 304.99929 * 12 11 9 14 14 C 1.50696 * 109.47128 * 65.00393 * 12 11 9 15 15 H 1.08001 * 120.00005 * 234.67493 * 14 12 11 16 16 C 1.37876 * 120.00213 * 54.67545 * 14 12 11 17 17 N 1.31513 * 120.00043 * 4.87553 * 16 14 12 18 18 Si 1.86800 * 119.99858 * 184.87109 * 16 14 12 19 19 H 1.48500 * 109.47356 * 0.02562 * 18 16 14 20 20 H 1.48509 * 109.46978 * 120.00188 * 18 16 14 21 21 H 1.48505 * 109.47424 * 239.99953 * 18 16 14 22 22 C 1.50705 * 109.46918 * 185.00240 * 12 11 9 23 23 C 1.38230 * 120.00330 * 151.48601 * 22 12 11 24 24 C 1.38229 * 120.00379 * 179.78538 * 23 22 12 25 25 C 1.38231 * 119.99712 * 0.44399 * 24 23 22 26 26 C 1.38235 * 120.00180 * 359.81261 * 25 24 23 27 27 C 1.38236 * 120.00012 * 359.97397 * 26 25 24 28 28 H 1.08995 * 109.47146 * 59.99819 * 1 2 3 29 29 H 1.08999 * 109.47187 * 299.99934 * 1 2 3 30 30 H 1.09001 * 109.47084 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46907 * 119.99690 * 2 1 3 32 32 H 1.08999 * 109.47187 * 240.00066 * 2 1 3 33 33 H 0.96701 * 114.00423 * 300.00272 * 5 3 2 34 34 H 1.09000 * 109.46938 * 304.99445 * 6 3 2 35 35 H 1.08998 * 109.47491 * 65.00123 * 6 3 2 36 36 H 1.09009 * 109.47039 * 299.99801 * 7 6 3 37 37 H 1.08994 * 109.47889 * 59.99578 * 7 6 3 38 38 H 0.97003 * 119.99636 * 359.97438 * 8 7 6 39 39 H 1.08999 * 109.47349 * 300.00190 * 11 9 8 40 40 H 1.08998 * 109.47242 * 60.00332 * 11 9 8 41 41 H 0.96998 * 119.99772 * 179.97438 * 17 16 14 42 42 H 1.08008 * 119.99476 * 0.02562 * 23 22 12 43 43 H 1.08003 * 120.00404 * 180.27349 * 24 23 22 44 44 H 1.08006 * 119.99806 * 179.82946 * 25 24 23 45 45 H 1.08008 * 120.00145 * 180.02562 * 26 25 24 46 46 H 1.07993 * 120.00129 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6620 2.0814 -1.2210 6 6 3.5648 1.4444 0.1257 7 6 4.0644 2.8850 0.2511 8 7 5.5245 2.8869 0.3709 9 6 6.1893 4.0530 0.4932 10 8 5.5786 5.1008 0.5038 11 6 7.6911 4.0548 0.6170 12 6 8.1907 5.4955 0.7423 13 1 7.8233 6.0821 -0.0997 14 6 7.6840 6.0927 2.0298 15 1 7.1291 7.0191 2.0137 16 6 7.9286 5.4564 3.2282 17 7 8.6848 4.3809 3.2593 18 14 7.1861 6.1221 4.8077 19 1 6.3806 7.3322 4.5045 20 1 6.3134 5.0875 5.4189 21 1 8.2734 6.4752 5.7555 22 6 9.6977 5.5064 0.7425 23 6 10.3811 6.6088 0.2646 24 6 11.7633 6.6206 0.2689 25 6 12.4623 5.5261 0.7425 26 6 11.7790 4.4214 1.2155 27 6 10.3967 4.4114 1.2153 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0141 1.6542 -2.0139 34 1 3.8571 0.8802 1.0113 35 1 4.0030 0.9837 -0.7597 36 1 3.7722 3.4494 -0.6345 37 1 3.6264 3.3458 1.1364 38 1 6.0129 2.0488 0.3621 39 1 7.9834 3.4909 1.5028 40 1 8.1292 3.5937 -0.2682 41 1 8.8572 3.9334 4.1025 42 1 9.8349 7.4627 -0.1085 43 1 12.2972 7.4838 -0.1004 44 1 13.5423 5.5342 0.7433 45 1 12.3252 3.5664 1.5859 46 1 9.8629 3.5486 1.5852 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356441512.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:16 Heat of formation + Delta-G solvation = -101.896453 kcal Electronic energy + Delta-G solvation = -24917.759210 eV Core-core repulsion = 21384.647069 eV Total energy + Delta-G solvation = -3533.112141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.67816 -39.68479 -39.02472 -36.26331 -35.62581 -33.74030 -32.98601 -31.84810 -31.36485 -29.95885 -27.94106 -26.36991 -24.34907 -23.10892 -22.73539 -22.36684 -21.61573 -20.78245 -18.41457 -17.78968 -17.30373 -17.09132 -16.98387 -16.74064 -16.61831 -16.03758 -15.51536 -15.45893 -15.07158 -15.00258 -14.47289 -14.38050 -13.94676 -13.78536 -13.47956 -13.34986 -13.25667 -13.11091 -12.90240 -12.82272 -12.70026 -12.48893 -12.30486 -12.10483 -11.87295 -11.81428 -11.69118 -11.64991 -11.06881 -11.06613 -10.89573 -10.58200 -10.25439 -9.87879 -9.39127 -9.11243 -7.94855 -6.10477 0.89737 1.01031 1.33320 1.37267 1.48120 2.05216 2.44190 2.48215 3.18976 3.38322 3.50538 3.77780 3.95152 4.09580 4.27258 4.28794 4.34026 4.39780 4.44016 4.52690 4.58537 4.65919 4.71174 4.77479 4.82452 4.90836 4.95139 5.05397 5.09321 5.12009 5.12949 5.16587 5.35833 5.40481 5.41968 5.54689 5.62001 5.68532 5.71291 5.90987 5.95688 6.10461 6.37040 6.43259 6.59038 6.80446 6.87510 6.90570 7.51537 7.64442 8.94360 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016850 B = 0.003297 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1661.330173 B = 8491.552800 C = 9325.114547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.109 3.891 4 H 0.084 0.916 5 O -0.578 6.578 6 C -0.147 4.147 7 C 0.126 3.874 8 N -0.731 5.731 9 C 0.516 3.484 10 O -0.577 6.577 11 C -0.128 4.128 12 C 0.088 3.912 13 H 0.012 0.988 14 C -0.491 4.491 15 H 0.024 0.976 16 C 0.036 3.964 17 N -0.884 5.884 18 Si 0.927 3.073 19 H -0.289 1.289 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.052 4.052 23 C -0.153 4.153 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.081 4.081 28 H 0.053 0.947 29 H 0.047 0.953 30 H 0.063 0.937 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.387 0.613 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.051 0.949 37 H 0.034 0.966 38 H 0.410 0.590 39 H 0.124 0.876 40 H 0.077 0.923 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.132 0.868 44 H 0.136 0.864 45 H 0.128 0.872 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.617 -13.449 -7.044 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.050 3.950 4 H 0.102 0.898 5 O -0.386 6.386 6 C -0.185 4.185 7 C 0.002 3.998 8 N -0.385 5.385 9 C 0.304 3.696 10 O -0.455 6.455 11 C -0.168 4.168 12 C 0.069 3.931 13 H 0.031 0.969 14 C -0.529 4.529 15 H 0.043 0.957 16 C -0.164 4.164 17 N -0.523 5.523 18 Si 0.756 3.244 19 H -0.215 1.215 20 H -0.205 1.205 21 H -0.204 1.204 22 C -0.053 4.053 23 C -0.171 4.171 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.164 4.164 27 C -0.099 4.099 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.237 0.763 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.246 0.754 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.146 0.854 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -5.317 -12.426 -6.480 14.988 hybrid contribution -0.179 0.226 0.903 0.948 sum -5.496 -12.199 -5.577 14.496 Atomic orbital electron populations 1.21715 0.95443 1.01872 1.01776 1.22171 0.96785 0.95631 1.03922 1.21891 0.92012 0.93810 0.87318 0.89810 1.86590 1.77225 1.58235 1.16534 1.22442 0.96978 0.94251 1.04856 1.21160 0.79992 0.98514 1.00151 1.45979 1.07559 1.08847 1.76143 1.21235 0.91458 0.83088 0.73786 1.90596 1.70896 1.33513 1.50519 1.21758 0.89415 1.01806 1.03844 1.17520 0.88423 0.92482 0.94662 0.96945 1.20976 1.32136 1.07677 0.92145 0.95727 1.25200 0.95295 0.95944 0.99945 1.69756 1.36858 1.19605 1.26062 0.85978 0.78485 0.78264 0.81705 1.21521 1.20511 1.20436 1.20315 0.96673 0.93603 0.94690 1.21074 0.95052 0.98087 1.02870 1.21149 0.93476 0.99244 1.01908 1.21204 1.00094 0.94014 1.01331 1.21374 0.94551 0.99175 1.01322 1.21325 0.93567 0.99407 0.95600 0.92835 0.93429 0.91750 0.90159 0.90078 0.76346 0.89203 0.88779 0.93061 0.94787 0.75364 0.85832 0.90495 0.92809 0.88068 0.85052 0.84577 0.85443 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.81 71.98 0.71 -1.34 16 2 C -0.15 -1.83 5.61 30.60 0.17 -1.66 16 3 C 0.11 1.91 2.97 30.60 0.09 2.00 16 4 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 5 O -0.58 -11.41 12.41 -148.98 -1.85 -13.26 16 6 C -0.15 -2.62 5.01 30.59 0.15 -2.47 16 7 C 0.13 3.68 5.57 86.38 0.48 4.16 16 8 N -0.73 -23.70 5.56 -463.06 -2.57 -26.28 16 9 C 0.52 22.67 7.58 87.66 0.66 23.34 16 10 O -0.58 -30.89 14.98 -3.03 -0.05 -30.94 16 11 C -0.13 -5.59 4.07 29.85 0.12 -5.47 16 12 C 0.09 4.46 1.97 -12.29 -0.02 4.44 16 13 H 0.01 0.65 7.91 -2.39 -0.02 0.63 16 14 C -0.49 -27.94 7.27 25.60 0.19 -27.76 16 15 H 0.02 1.51 7.82 -2.91 -0.02 1.49 16 16 C 0.04 1.92 5.12 84.65 0.43 2.35 16 17 N -0.88 -45.03 7.99 21.45 0.17 -44.86 16 18 Si 0.93 45.05 29.54 68.60 2.03 47.07 16 19 H -0.29 -14.73 7.11 99.48 0.71 -14.03 16 20 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 21 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 22 C -0.05 -2.44 4.69 -19.87 -0.09 -2.53 16 23 C -0.15 -6.59 9.71 22.27 0.22 -6.38 16 24 C -0.14 -5.09 10.05 22.27 0.22 -4.87 16 25 C -0.15 -5.08 10.05 22.27 0.22 -4.85 16 26 C -0.15 -5.41 10.05 22.27 0.22 -5.19 16 27 C -0.08 -3.47 7.45 22.27 0.17 -3.30 16 28 H 0.05 0.80 7.82 -2.39 -0.02 0.79 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.39 4.65 9.05 -74.06 -0.67 3.98 16 34 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.05 1.67 7.82 -2.38 -0.02 1.65 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.41 10.28 8.47 -92.71 -0.79 9.49 16 39 H 0.12 5.62 4.70 -2.39 -0.01 5.61 16 40 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 41 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 42 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 43 H 0.13 3.92 8.06 -2.91 -0.02 3.89 16 44 H 0.14 3.65 8.06 -2.91 -0.02 3.63 16 45 H 0.13 3.98 8.06 -2.91 -0.02 3.96 16 46 H 0.13 5.78 5.18 -2.91 -0.02 5.77 16 Total: -1.00 -69.26 371.36 1.20 -68.06 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: -0.48 Total: 29.72 kcal Atomic # 6 Polarization: -33.48 SS G_CDS: 3.94 Total: -29.53 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -2.40 Total: -71.13 kcal Atomic # 8 Polarization: -42.30 SS G_CDS: -1.89 Total: -44.20 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.07 kcal Total: -69.26 1.20 -68.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356441512.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.835 kcal (2) G-P(sol) polarization free energy of solvation -69.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds