Wall clock time and date at job start Fri Apr 10 2020 21:34:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46713 * 2 1 4 4 H 1.08993 * 109.47437 * 305.00481 * 3 2 1 5 5 O 1.42900 * 109.46674 * 65.00529 * 3 2 1 6 6 C 1.52999 * 109.46856 * 184.99984 * 3 2 1 7 7 C 1.53005 * 109.46912 * 175.00299 * 6 3 2 8 8 N 1.46502 * 109.46864 * 179.97438 * 7 6 3 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09001 * 109.46712 * 299.99374 * 1 2 3 29 29 H 1.08999 * 109.47548 * 59.99841 * 1 2 3 30 30 H 1.09009 * 109.46576 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46865 * 240.00594 * 2 1 3 32 32 H 1.08999 * 109.47548 * 120.00159 * 2 1 3 33 33 H 0.96694 * 114.00657 * 59.99771 * 5 3 2 34 34 H 1.08998 * 109.46969 * 55.00492 * 6 3 2 35 35 H 1.09005 * 109.47186 * 295.00228 * 6 3 2 36 36 H 1.08998 * 109.47146 * 60.00301 * 7 6 3 37 37 H 1.08995 * 109.46642 * 299.99928 * 7 6 3 38 38 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0813 1.2211 6 6 3.5648 1.4445 -0.1257 7 6 4.0644 2.8852 -0.2511 8 7 5.5245 2.8870 -0.3708 9 6 6.1890 4.0531 -0.4941 10 8 5.5782 5.1009 -0.5054 11 6 7.6909 4.0550 -0.6179 12 6 8.1905 5.4957 -0.7431 13 1 7.6725 5.9897 -1.5651 14 6 7.9162 6.2359 0.5406 15 1 7.8536 5.6946 1.4732 16 6 7.7452 7.6038 0.5246 17 7 7.9514 8.2793 -0.5847 18 14 7.2281 8.4988 2.0807 19 1 7.1209 9.9535 1.8026 20 1 5.9115 7.9830 2.5340 21 1 8.2412 8.2712 3.1424 22 6 9.6730 5.4916 -1.0136 23 6 10.5494 5.0196 -0.0544 24 6 11.9090 5.0117 -0.3043 25 6 12.3928 5.4843 -1.5099 26 6 11.5169 5.9611 -2.4671 27 6 10.1570 5.9649 -2.2188 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0141 1.6542 2.0139 34 1 3.8570 0.8802 -1.0113 35 1 4.0029 0.9837 0.7597 36 1 3.7722 3.4494 0.6346 37 1 3.6262 3.3459 -1.1364 38 1 6.0129 2.0490 -0.3621 39 1 7.9832 3.4904 -1.5033 40 1 8.1291 3.5945 0.2676 41 1 8.2975 7.8278 -1.3704 42 1 10.1716 4.6542 0.8892 43 1 12.5932 4.6389 0.4435 44 1 13.4552 5.4806 -1.7041 45 1 11.8949 6.3298 -3.4091 46 1 9.4726 6.3372 -2.9668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356441518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:26 Heat of formation + Delta-G solvation = -91.735175 kcal Electronic energy + Delta-G solvation = -24635.744268 eV Core-core repulsion = 21103.072753 eV Total energy + Delta-G solvation = -3532.671515 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.26045 -38.52341 -38.05762 -34.82215 -34.04276 -33.08902 -31.42545 -30.72097 -30.10418 -28.84235 -26.09255 -24.65450 -22.94133 -21.98141 -21.66794 -21.62514 -20.21872 -19.42161 -16.96315 -16.60569 -16.42768 -16.09389 -15.73172 -15.62352 -15.04114 -14.45035 -14.39681 -14.08873 -13.79833 -13.61068 -13.27025 -13.07153 -12.70349 -12.66183 -12.42521 -12.26446 -12.23196 -11.82696 -11.70028 -11.52927 -11.30975 -11.25149 -10.97763 -10.83749 -10.68984 -10.42501 -10.19410 -10.09383 -10.01049 -9.66186 -8.99373 -8.61933 -8.54355 -8.25075 -8.13371 -7.62660 -6.19692 -3.88501 2.19561 2.25208 3.50301 3.53217 3.59008 3.61618 3.74238 4.16311 4.45070 4.62321 4.65671 4.70144 4.78880 4.93331 5.04125 5.23263 5.40239 5.43993 5.50618 5.55968 5.60083 5.62561 5.64050 5.70033 5.76943 5.82065 5.95063 6.01127 6.05016 6.12051 6.14884 6.21626 6.32412 6.43175 6.70330 6.79858 6.91032 6.93901 7.21934 7.23834 7.39155 7.45070 7.74491 7.86561 8.06122 8.25477 8.54185 8.99336 9.06228 9.80362 11.19848 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.003260 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.823281 B = 8587.622282 C = 9892.671857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.108 3.892 4 H 0.101 0.899 5 O -0.557 6.557 6 C -0.162 4.162 7 C 0.125 3.875 8 N -0.752 5.752 9 C 0.511 3.489 10 O -0.498 6.498 11 C -0.116 4.116 12 C 0.073 3.927 13 H 0.049 0.951 14 C -0.568 4.568 15 H 0.045 0.955 16 C 0.032 3.968 17 N -0.906 5.906 18 Si 1.060 2.940 19 H -0.284 1.284 20 H -0.288 1.288 21 H -0.291 1.291 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.373 0.627 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.391 0.609 39 H 0.064 0.936 40 H 0.078 0.922 41 H 0.271 0.729 42 H 0.115 0.885 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.047 -18.032 -0.326 18.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.048 3.952 4 H 0.119 0.881 5 O -0.362 6.362 6 C -0.200 4.200 7 C 0.001 3.999 8 N -0.407 5.407 9 C 0.297 3.703 10 O -0.369 6.369 11 C -0.156 4.156 12 C 0.054 3.946 13 H 0.067 0.933 14 C -0.605 4.605 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.889 3.111 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.034 4.034 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.089 0.911 32 H 0.083 0.917 33 H 0.220 0.780 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.224 0.776 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.082 0.918 42 H 0.133 0.867 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.243 -15.301 -0.156 16.526 hybrid contribution 1.101 -2.335 -0.183 2.588 sum -5.141 -17.636 -0.339 18.373 Atomic orbital electron populations 1.21712 0.95113 1.01345 1.02556 1.22241 0.97173 0.97190 1.02687 1.21915 0.92443 0.92666 0.88130 0.88137 1.86632 1.76790 1.57258 1.15539 1.22526 0.96855 0.97565 1.03097 1.21121 0.80931 0.95493 1.02368 1.46196 1.06923 1.09158 1.78467 1.20860 0.90618 0.82894 0.75900 1.90758 1.69354 1.30808 1.45974 1.21660 0.91063 1.01541 1.01376 1.17860 0.86628 0.90319 0.99821 0.93264 1.21529 1.52726 0.94277 0.91962 0.93708 1.25576 0.94178 0.94946 1.02644 1.70733 1.41236 1.39614 1.02561 0.83689 0.76392 0.76287 0.74731 1.20925 1.21458 1.21745 1.20868 0.98908 0.92253 0.91330 1.20926 0.92320 1.00270 0.98937 1.21016 0.95631 1.01342 0.96854 1.20823 0.98455 1.02825 0.94969 1.20964 0.93787 1.00733 0.98794 1.21077 0.94890 1.01382 0.97499 0.91996 0.92683 0.92958 0.91084 0.91672 0.77980 0.90581 0.91091 0.91204 0.92197 0.77639 0.91723 0.90336 0.91810 0.86695 0.87458 0.87590 0.87454 0.87156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.16 -1.04 5.61 -26.73 -0.15 -1.19 16 3 C 0.11 0.93 2.97 -26.73 -0.08 0.86 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 5 O -0.56 -5.67 12.41 -35.23 -0.44 -6.11 16 6 C -0.16 -1.43 5.01 -26.73 -0.13 -1.57 16 7 C 0.12 1.70 5.57 -4.04 -0.02 1.68 16 8 N -0.75 -11.16 5.56 -60.29 -0.33 -11.49 16 9 C 0.51 10.38 7.58 -10.99 -0.08 10.29 16 10 O -0.50 -12.83 15.02 5.55 0.08 -12.74 16 11 C -0.12 -2.27 4.95 -27.88 -0.14 -2.41 16 12 C 0.07 1.77 1.23 -92.92 -0.11 1.65 16 13 H 0.05 1.36 6.59 -51.93 -0.34 1.01 16 14 C -0.57 -15.68 6.35 -34.44 -0.22 -15.90 16 15 H 0.04 1.24 7.82 -52.48 -0.41 0.83 16 16 C 0.03 0.94 5.45 -17.83 -0.10 0.84 16 17 N -0.91 -28.07 13.56 55.43 0.75 -27.32 16 18 Si 1.06 26.68 29.91 -169.99 -5.08 21.59 16 19 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 C -0.03 -0.74 4.53 -104.62 -0.47 -1.21 16 23 C -0.11 -2.19 8.90 -39.58 -0.35 -2.54 16 24 C -0.13 -2.36 10.05 -39.58 -0.40 -2.76 16 25 C -0.15 -2.66 10.05 -39.58 -0.40 -3.06 16 26 C -0.12 -2.30 10.05 -39.58 -0.40 -2.70 16 27 C -0.13 -2.75 9.18 -39.58 -0.36 -3.11 16 28 H 0.06 0.48 7.82 -51.93 -0.41 0.07 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.11 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.37 2.54 9.05 45.56 0.41 2.96 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 1.12 7.82 -51.93 -0.41 0.71 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.39 4.42 8.47 -40.82 -0.35 4.07 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 40 H 0.08 1.43 7.96 -51.93 -0.41 1.02 16 41 H 0.27 8.24 6.24 -40.82 -0.25 7.99 16 42 H 0.12 2.31 7.85 -52.48 -0.41 1.90 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 44 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 45 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 46 H 0.11 2.30 7.95 -52.49 -0.42 1.88 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -35.15 380.08 -9.22 -44.36 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -6.87 Total: 7.79 kcal Atomic # 6 Polarization: -18.75 SS G_CDS: -3.06 Total: -21.80 kcal Atomic # 7 Polarization: -39.23 SS G_CDS: 0.42 Total: -38.81 kcal Atomic # 8 Polarization: -18.50 SS G_CDS: -0.35 Total: -18.86 kcal Atomic # 14 Polarization: 26.68 SS G_CDS: -5.08 Total: 21.59 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.15 -9.22 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356441518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.374 kcal (2) G-P(sol) polarization free energy of solvation -35.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds