Wall clock time and date at job start Fri Apr 10 2020 21:34:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46713 * 2 1 4 4 H 1.08993 * 109.47437 * 305.00481 * 3 2 1 5 5 O 1.42900 * 109.46674 * 65.00529 * 3 2 1 6 6 C 1.52999 * 109.46856 * 184.99984 * 3 2 1 7 7 C 1.53005 * 109.46912 * 175.00299 * 6 3 2 8 8 N 1.46502 * 109.46864 * 179.97438 * 7 6 3 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 7 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31508 * 120.00032 * 353.27812 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09001 * 109.46712 * 299.99374 * 1 2 3 29 29 H 1.08999 * 109.47548 * 59.99841 * 1 2 3 30 30 H 1.09009 * 109.46576 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46865 * 240.00594 * 2 1 3 32 32 H 1.08999 * 109.47548 * 120.00159 * 2 1 3 33 33 H 0.96694 * 114.00657 * 59.99771 * 5 3 2 34 34 H 1.08998 * 109.46969 * 55.00492 * 6 3 2 35 35 H 1.09005 * 109.47186 * 295.00228 * 6 3 2 36 36 H 1.08998 * 109.47146 * 60.00301 * 7 6 3 37 37 H 1.08995 * 109.46642 * 299.99928 * 7 6 3 38 38 H 0.97002 * 120.00062 * 0.02562 * 8 7 6 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.97008 * 120.00303 * 354.69126 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 8 1.6619 2.0813 1.2211 6 6 3.5648 1.4445 -0.1257 7 6 4.0644 2.8852 -0.2511 8 7 5.5245 2.8870 -0.3708 9 6 6.1890 4.0531 -0.4941 10 8 5.5782 5.1009 -0.5054 11 6 7.6909 4.0550 -0.6179 12 6 8.1905 5.4957 -0.7431 13 1 7.6725 5.9897 -1.5651 14 6 7.9162 6.2359 0.5406 15 1 7.8536 5.6946 1.4732 16 6 7.7452 7.6038 0.5246 17 7 7.9514 8.2793 -0.5847 18 14 7.2281 8.4988 2.0807 19 1 7.1209 9.9535 1.8026 20 1 5.9115 7.9830 2.5340 21 1 8.2412 8.2712 3.1424 22 6 9.6730 5.4916 -1.0136 23 6 10.5494 5.0196 -0.0544 24 6 11.9090 5.0117 -0.3043 25 6 12.3928 5.4843 -1.5099 26 6 11.5169 5.9611 -2.4671 27 6 10.1570 5.9649 -2.2188 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0141 1.6542 2.0139 34 1 3.8570 0.8802 -1.0113 35 1 4.0029 0.9837 0.7597 36 1 3.7722 3.4494 0.6346 37 1 3.6262 3.3459 -1.1364 38 1 6.0129 2.0490 -0.3621 39 1 7.9832 3.4904 -1.5033 40 1 8.1291 3.5945 0.2676 41 1 8.2975 7.8278 -1.3704 42 1 10.1716 4.6542 0.8892 43 1 12.5932 4.6389 0.4435 44 1 13.4552 5.4806 -1.7041 45 1 11.8949 6.3298 -3.4091 46 1 9.4726 6.3372 -2.9668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356441518.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:25 Heat of formation + Delta-G solvation = -116.281672 kcal Electronic energy + Delta-G solvation = -24636.808684 eV Core-core repulsion = 21103.072753 eV Total energy + Delta-G solvation = -3533.735931 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.81534 -39.87639 -39.07596 -36.34212 -35.71274 -33.76853 -33.32378 -31.87836 -31.60600 -30.29195 -27.44962 -26.22080 -24.59827 -23.22367 -22.86541 -22.39886 -21.76649 -21.06414 -18.85073 -18.01614 -17.39039 -17.28257 -16.92437 -16.81175 -16.46207 -15.82656 -15.66754 -15.64694 -15.32542 -14.98621 -14.56273 -14.45082 -14.07037 -14.03140 -13.85355 -13.49549 -13.44665 -13.16500 -12.91743 -12.69886 -12.63304 -12.50336 -12.19289 -12.08223 -11.96054 -11.82266 -11.72043 -11.66739 -11.51028 -10.99762 -10.69663 -10.56580 -10.34741 -9.98261 -9.64351 -9.27399 -8.45216 -6.11993 0.67567 0.73479 1.46804 1.57793 1.73397 1.88587 2.32551 2.61731 3.10482 3.35711 3.48710 3.75867 3.90096 4.05590 4.13261 4.16370 4.26181 4.28184 4.29308 4.32899 4.43922 4.48566 4.55809 4.62544 4.65085 4.75529 4.82793 4.86631 4.94067 5.03582 5.04448 5.11329 5.16273 5.23387 5.34623 5.40570 5.41331 5.42935 5.58790 5.74472 5.82031 5.94391 6.23769 6.30696 6.40250 6.72963 6.78155 6.88295 7.52990 7.63404 8.95148 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014876 B = 0.003260 C = 0.002830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.823281 B = 8587.622282 C = 9892.671857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.146 4.146 3 C 0.107 3.893 4 H 0.086 0.914 5 O -0.581 6.581 6 C -0.146 4.146 7 C 0.124 3.876 8 N -0.726 5.726 9 C 0.507 3.493 10 O -0.565 6.565 11 C -0.110 4.110 12 C 0.074 3.926 13 H 0.002 0.998 14 C -0.558 4.558 15 H 0.039 0.961 16 C -0.026 4.026 17 N -0.944 5.944 18 Si 1.096 2.904 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.057 4.057 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.144 4.144 26 C -0.125 4.125 27 C -0.153 4.153 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.387 0.613 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.043 0.957 37 H 0.041 0.959 38 H 0.414 0.586 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.260 0.740 42 H 0.114 0.886 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.135 0.865 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.965 -21.033 0.458 21.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C 0.047 3.953 4 H 0.104 0.896 5 O -0.389 6.389 6 C -0.184 4.184 7 C 0.000 4.000 8 N -0.381 5.381 9 C 0.294 3.706 10 O -0.442 6.442 11 C -0.150 4.150 12 C 0.055 3.945 13 H 0.020 0.980 14 C -0.596 4.596 15 H 0.057 0.943 16 C -0.224 4.224 17 N -0.582 5.582 18 Si 0.921 3.079 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.189 1.189 22 C -0.058 4.058 23 C -0.140 4.140 24 C -0.142 4.142 25 C -0.161 4.161 26 C -0.143 4.143 27 C -0.172 4.172 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.236 0.764 34 H 0.116 0.884 35 H 0.109 0.891 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.132 0.868 43 H 0.161 0.839 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.141 -18.400 0.646 18.872 hybrid contribution 0.481 -1.513 -0.478 1.658 sum -3.661 -19.913 0.168 20.247 Atomic orbital electron populations 1.21723 0.95572 1.01867 1.01739 1.22165 0.96690 0.95560 1.03993 1.21941 0.92175 0.93873 0.87277 0.89602 1.86602 1.77271 1.58338 1.16655 1.22439 0.96851 0.93997 1.05065 1.21185 0.79827 0.98695 1.00265 1.45916 1.07619 1.08571 1.75980 1.21074 0.91050 0.83326 0.75129 1.90737 1.70515 1.33459 1.49440 1.21566 0.90674 0.99200 1.03562 1.17680 0.88166 0.92178 0.96461 0.97964 1.21808 1.50600 0.94171 0.93035 0.94261 1.26739 0.94667 0.96707 1.04300 1.70814 1.44328 1.39916 1.03159 0.83217 0.76725 0.75095 0.72872 1.21376 1.21432 1.18941 1.20629 0.97611 0.94635 0.92880 1.21008 0.93545 1.00990 0.98428 1.21413 0.94868 1.00035 0.97911 1.21314 1.00331 1.00566 0.93937 1.21299 0.92560 1.00008 1.00409 1.21128 0.96384 1.02364 0.97278 0.93099 0.93295 0.91727 0.89769 0.90259 0.76414 0.88412 0.89051 0.93893 0.94058 0.74977 0.88804 0.88386 0.92920 0.86787 0.83883 0.83502 0.84694 0.88738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.81 71.98 0.71 -1.22 16 2 C -0.15 -1.61 5.61 30.60 0.17 -1.44 16 3 C 0.11 1.72 2.97 30.60 0.09 1.81 16 4 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 5 O -0.58 -11.61 12.41 -148.98 -1.85 -13.45 16 6 C -0.15 -2.26 5.01 30.60 0.15 -2.11 16 7 C 0.12 3.40 5.57 86.38 0.48 3.88 16 8 N -0.73 -20.99 5.56 -463.05 -2.57 -23.56 16 9 C 0.51 21.04 7.58 87.66 0.66 21.71 16 10 O -0.56 -30.76 15.02 -3.04 -0.05 -30.81 16 11 C -0.11 -4.32 4.95 29.85 0.15 -4.17 16 12 C 0.07 3.75 1.23 -12.28 -0.02 3.73 16 13 H 0.00 0.12 6.59 -2.39 -0.02 0.11 16 14 C -0.56 -31.84 6.35 25.60 0.16 -31.67 16 15 H 0.04 2.21 7.82 -2.91 -0.02 2.19 16 16 C -0.03 -1.57 5.45 84.65 0.46 -1.11 16 17 N -0.94 -61.40 13.56 21.44 0.29 -61.11 16 18 Si 1.10 55.19 29.91 68.60 2.05 57.25 16 19 H -0.29 -14.57 7.11 99.48 0.71 -13.86 16 20 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 21 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 22 C -0.06 -2.58 4.53 -19.87 -0.09 -2.67 16 23 C -0.12 -4.84 8.90 22.27 0.20 -4.64 16 24 C -0.12 -4.06 10.05 22.27 0.22 -3.84 16 25 C -0.14 -4.44 10.05 22.27 0.22 -4.21 16 26 C -0.12 -4.35 10.05 22.27 0.22 -4.13 16 27 C -0.15 -6.55 9.18 22.27 0.20 -6.35 16 28 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 31 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.39 4.87 9.05 -74.06 -0.67 4.20 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.04 1.42 7.82 -2.39 -0.02 1.41 16 37 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.41 8.29 8.47 -92.71 -0.79 7.50 16 39 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.10 3.45 7.96 -2.39 -0.02 3.43 16 41 H 0.26 16.90 6.24 -92.70 -0.58 16.33 16 42 H 0.11 4.45 7.85 -2.91 -0.02 4.42 16 43 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.15 3.38 8.06 -2.91 -0.02 3.35 16 45 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -82.30 380.08 1.58 -80.71 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -0.30 Total: 27.40 kcal Atomic # 6 Polarization: -40.43 SS G_CDS: 4.01 Total: -36.42 kcal Atomic # 7 Polarization: -82.39 SS G_CDS: -2.28 Total: -84.67 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.89 Total: -44.26 kcal Atomic # 14 Polarization: 55.19 SS G_CDS: 2.05 Total: 57.25 kcal Total: -82.30 1.58 -80.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356441518.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.570 kcal (2) G-P(sol) polarization free energy of solvation -82.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds