Wall clock time and date at job start Fri Apr 10 2020 21:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47197 * 2 1 4 4 H 1.08997 * 109.47179 * 305.00247 * 3 2 1 5 5 O 1.42900 * 109.46737 * 65.00169 * 3 2 1 6 6 C 1.52999 * 109.47438 * 184.99847 * 3 2 1 7 7 C 1.53000 * 109.47071 * 175.00076 * 6 3 2 8 8 N 1.46502 * 109.46825 * 180.02562 * 7 6 3 9 9 C 1.34774 * 119.99888 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99676 * 359.97438 * 9 8 7 11 11 C 1.50698 * 120.00108 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.47045 * 179.97438 * 11 9 8 13 13 H 1.08998 * 109.46930 * 55.00146 * 12 11 9 14 14 C 1.50696 * 109.47286 * 294.99632 * 12 11 9 15 15 H 1.07999 * 120.00379 * 325.84710 * 14 12 11 16 16 C 1.37875 * 120.00269 * 145.84395 * 14 12 11 17 17 N 1.31515 * 119.99570 * 6.12137 * 16 14 12 18 18 Si 1.86797 * 120.00418 * 186.12221 * 16 14 12 19 19 H 1.48497 * 109.46933 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47031 * 119.99913 * 18 16 14 21 21 H 1.48494 * 109.47318 * 240.00131 * 18 16 14 22 22 C 1.50698 * 109.47050 * 174.99849 * 12 11 9 23 23 C 1.38245 * 120.00232 * 63.46885 * 22 12 11 24 24 C 1.38223 * 120.00151 * 179.78715 * 23 22 12 25 25 C 1.38244 * 120.00156 * 0.44384 * 24 23 22 26 26 C 1.38229 * 119.99581 * 359.80940 * 25 24 23 27 27 C 1.38230 * 120.00246 * 359.97438 * 26 25 24 28 28 H 1.08994 * 109.47313 * 60.00118 * 1 2 3 29 29 H 1.09000 * 109.46997 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47391 * 299.99767 * 1 2 3 31 31 H 1.08998 * 109.47391 * 240.00233 * 2 1 3 32 32 H 1.09004 * 109.47359 * 119.99840 * 2 1 3 33 33 H 0.96698 * 114.00409 * 60.00343 * 5 3 2 34 34 H 1.08999 * 109.47045 * 295.00389 * 6 3 2 35 35 H 1.09007 * 109.46531 * 55.00044 * 6 3 2 36 36 H 1.08998 * 109.46720 * 299.99882 * 7 6 3 37 37 H 1.08998 * 109.46906 * 60.00439 * 7 6 3 38 38 H 0.97001 * 120.00175 * 359.97438 * 8 7 6 39 39 H 1.08998 * 109.47252 * 299.99765 * 11 9 8 40 40 H 1.08998 * 109.47176 * 60.00170 * 11 9 8 41 41 H 0.97003 * 120.00037 * 180.02562 * 17 16 14 42 42 H 1.07997 * 119.99280 * 0.02562 * 23 22 12 43 43 H 1.08003 * 120.00437 * 180.27575 * 24 23 22 44 44 H 1.08001 * 119.99778 * 179.83189 * 25 24 23 45 45 H 1.08006 * 119.99891 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.00208 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 8 1.6619 2.0813 1.2211 6 6 3.5648 1.4444 -0.1257 7 6 4.0644 2.8851 -0.2511 8 7 5.5244 2.8868 -0.3720 9 6 6.1890 4.0529 -0.4945 10 8 5.5784 5.1007 -0.5051 11 6 7.6908 4.0547 -0.6195 12 6 8.1904 5.4954 -0.7448 13 1 7.8237 6.0816 0.0978 14 6 7.6827 6.0931 -2.0315 15 1 7.5701 5.4722 -2.9080 16 6 7.3617 7.4327 -2.0900 17 7 7.6110 8.2140 -1.0619 18 14 6.5727 8.1378 -3.6294 19 1 6.3980 7.0589 -4.6347 20 1 5.2475 8.7139 -3.2869 21 1 7.4447 9.2010 -4.1900 22 6 9.6974 5.5061 -0.7462 23 6 10.3921 4.8856 -1.7677 24 6 11.7743 4.8993 -1.7714 25 6 12.4621 5.5255 -0.7487 26 6 11.7674 6.1414 0.2755 27 6 10.3852 6.1316 0.2768 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.0141 1.6542 2.0139 34 1 4.0029 0.9837 0.7597 35 1 3.8570 0.8801 -1.0113 36 1 3.6263 3.3458 -1.1364 37 1 3.7722 3.4493 0.6346 38 1 6.0128 2.0488 -0.3632 39 1 8.1296 3.5932 0.2651 40 1 7.9823 3.4911 -1.5058 41 1 7.3848 9.1564 -1.1029 42 1 9.8548 4.3936 -2.5649 43 1 12.3170 4.4184 -2.5718 44 1 13.5420 5.5338 -0.7501 45 1 12.3047 6.6310 1.0743 46 1 9.8425 6.6125 1.0772 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356441519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:30 Heat of formation + Delta-G solvation = -111.444117 kcal Electronic energy + Delta-G solvation = -24587.071265 eV Core-core repulsion = 21053.545106 eV Total energy + Delta-G solvation = -3533.526159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.67278 -39.73744 -39.03780 -36.12295 -35.52612 -33.74867 -33.42047 -31.83967 -31.48341 -30.17010 -27.73934 -26.36308 -24.41860 -23.15014 -22.80996 -22.36893 -21.59942 -20.79106 -18.51713 -17.95619 -17.31653 -17.18973 -16.92202 -16.76880 -16.39755 -16.10803 -15.66120 -15.50695 -15.19367 -14.90383 -14.48549 -14.26487 -13.98966 -13.95444 -13.55303 -13.50400 -13.41613 -13.16983 -12.90177 -12.86287 -12.55230 -12.46969 -12.45383 -12.13819 -11.81463 -11.80960 -11.67775 -11.64529 -11.31369 -10.95619 -10.91826 -10.58955 -10.30939 -9.89424 -9.52854 -9.17559 -8.04525 -6.06570 0.79299 0.85565 1.33427 1.38097 1.44895 2.00970 2.41889 2.45705 3.19689 3.36677 3.51225 3.78616 3.94546 4.09963 4.24880 4.26775 4.28946 4.35576 4.38533 4.42579 4.56608 4.59068 4.64403 4.68881 4.75549 4.80194 4.94433 4.95813 5.00798 5.06186 5.12441 5.13275 5.28101 5.36587 5.39312 5.42340 5.54306 5.64474 5.67895 5.79498 5.85143 5.97062 6.18574 6.43008 6.47970 6.83909 6.90709 7.01917 7.56253 7.64903 9.05529 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014475 B = 0.003265 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1933.874241 B = 8574.788766 C = 9814.074490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.146 4.146 3 C 0.107 3.893 4 H 0.084 0.916 5 O -0.580 6.580 6 C -0.146 4.146 7 C 0.125 3.875 8 N -0.728 5.728 9 C 0.506 3.494 10 O -0.561 6.561 11 C -0.115 4.115 12 C 0.082 3.918 13 H 0.021 0.979 14 C -0.484 4.484 15 H 0.047 0.953 16 C 0.022 3.978 17 N -0.918 5.918 18 Si 0.934 3.066 19 H -0.265 1.265 20 H -0.294 1.294 21 H -0.281 1.281 22 C -0.046 4.046 23 C -0.127 4.127 24 C -0.126 4.126 25 C -0.148 4.148 26 C -0.128 4.128 27 C -0.144 4.144 28 H 0.047 0.953 29 H 0.064 0.936 30 H 0.050 0.950 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.387 0.613 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.037 0.963 37 H 0.045 0.955 38 H 0.413 0.587 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.253 0.747 42 H 0.116 0.884 43 H 0.141 0.859 44 H 0.144 0.856 45 H 0.131 0.869 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 -20.264 2.875 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.184 4.184 3 C 0.047 3.953 4 H 0.102 0.898 5 O -0.388 6.388 6 C -0.183 4.183 7 C 0.001 3.999 8 N -0.384 5.384 9 C 0.293 3.707 10 O -0.437 6.437 11 C -0.155 4.155 12 C 0.063 3.937 13 H 0.040 0.960 14 C -0.522 4.522 15 H 0.065 0.935 16 C -0.177 4.177 17 N -0.558 5.558 18 Si 0.762 3.238 19 H -0.189 1.189 20 H -0.221 1.221 21 H -0.207 1.207 22 C -0.046 4.046 23 C -0.145 4.145 24 C -0.144 4.144 25 C -0.166 4.166 26 C -0.146 4.146 27 C -0.163 4.163 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.236 0.764 34 H 0.111 0.889 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.249 0.751 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.062 0.938 42 H 0.134 0.866 43 H 0.159 0.841 44 H 0.161 0.839 45 H 0.149 0.851 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.197 -18.929 2.503 19.359 hybrid contribution -0.373 0.592 -0.352 0.783 sum -3.570 -18.337 2.151 18.804 Atomic orbital electron populations 1.21719 0.95620 1.01852 1.01713 1.22164 0.96649 0.95595 1.03998 1.21930 0.92280 0.93817 0.87242 0.89810 1.86601 1.77281 1.58306 1.16624 1.22432 0.96743 0.94126 1.05044 1.21153 0.80080 0.98546 1.00134 1.45942 1.07474 1.08710 1.76225 1.21127 0.91222 0.83281 0.75020 1.90747 1.70522 1.33460 1.48985 1.21672 0.90439 1.00065 1.03370 1.17617 0.87666 0.91230 0.97215 0.96016 1.21025 1.41184 0.93694 0.96259 0.93450 1.25490 0.95967 0.98134 0.98060 1.70062 1.49062 1.04897 1.31741 0.85872 0.78079 0.78635 0.81246 1.18905 1.22100 1.20661 1.20570 0.97260 0.93744 0.93065 1.21039 0.94483 1.00993 0.98013 1.21374 0.93780 1.00075 0.99139 1.21264 1.00478 0.99883 0.94928 1.21278 0.93439 1.00126 0.99771 1.21097 0.94985 1.00999 0.99170 0.93408 0.91732 0.93040 0.89870 0.90142 0.76391 0.88860 0.88625 0.94501 0.93681 0.75054 0.88941 0.88419 0.93842 0.86568 0.84076 0.83854 0.85091 0.88961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.81 71.98 0.71 -1.26 16 2 C -0.15 -1.65 5.61 30.59 0.17 -1.47 16 3 C 0.11 1.75 2.97 30.60 0.09 1.84 16 4 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 5 O -0.58 -11.43 12.41 -148.98 -1.85 -13.28 16 6 C -0.15 -2.29 5.01 30.59 0.15 -2.13 16 7 C 0.12 3.44 5.57 86.38 0.48 3.92 16 8 N -0.73 -21.04 5.56 -463.06 -2.57 -23.61 16 9 C 0.51 20.88 7.58 87.66 0.66 21.54 16 10 O -0.56 -30.37 14.98 -3.04 -0.05 -30.42 16 11 C -0.12 -4.48 4.95 29.85 0.15 -4.33 16 12 C 0.08 4.10 1.67 -12.29 -0.02 4.08 16 13 H 0.02 1.29 6.98 -2.39 -0.02 1.27 16 14 C -0.48 -27.13 6.37 25.60 0.16 -26.97 16 15 H 0.05 2.61 7.82 -2.91 -0.02 2.59 16 16 C 0.02 1.31 5.45 84.65 0.46 1.77 16 17 N -0.92 -57.73 12.87 21.45 0.28 -57.46 16 18 Si 0.93 47.87 29.54 68.60 2.03 49.90 16 19 H -0.26 -12.94 7.11 99.48 0.71 -12.23 16 20 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 21 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 22 C -0.05 -2.07 4.77 -19.86 -0.09 -2.16 16 23 C -0.13 -4.96 8.86 22.27 0.20 -4.76 16 24 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 25 C -0.15 -4.59 10.05 22.27 0.22 -4.36 16 26 C -0.13 -4.53 10.05 22.27 0.22 -4.30 16 27 C -0.14 -6.26 9.67 22.27 0.22 -6.05 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.76 7.82 -2.39 -0.02 0.75 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.39 4.64 9.05 -74.06 -0.67 3.97 16 34 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.04 1.46 7.82 -2.39 -0.02 1.44 16 38 H 0.41 8.27 8.47 -92.71 -0.79 7.48 16 39 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.10 3.34 7.78 -2.39 -0.02 3.32 16 41 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 42 H 0.12 4.34 7.76 -2.91 -0.02 4.32 16 43 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 44 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 45 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 46 H 0.09 4.26 7.95 -2.91 -0.02 4.24 16 Total: -1.00 -79.38 382.31 1.35 -78.03 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.49 Total: 25.34 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 4.01 Total: -28.50 kcal Atomic # 7 Polarization: -78.77 SS G_CDS: -2.30 Total: -81.07 kcal Atomic # 8 Polarization: -41.80 SS G_CDS: -1.89 Total: -43.69 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -79.38 1.35 -78.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356441519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.414 kcal (2) G-P(sol) polarization free energy of solvation -79.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds