Wall clock time and date at job start Fri Apr 10 2020 21:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46842 * 2 1 4 4 H 1.08994 * 109.47451 * 304.99938 * 3 2 1 5 5 C 1.50701 * 109.46847 * 185.00191 * 3 2 1 6 6 H 1.08003 * 120.00159 * 240.00082 * 5 3 2 7 7 C 1.37878 * 120.00447 * 59.99790 * 5 3 2 8 8 N 1.31518 * 119.99427 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00128 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47376 * 60.00339 * 9 7 5 11 11 H 1.48504 * 109.46795 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47266 * 299.99753 * 9 7 5 13 13 N 1.46502 * 109.47324 * 65.00076 * 3 2 1 14 14 C 1.34769 * 120.00004 * 275.00102 * 13 3 2 15 15 O 1.21280 * 120.00117 * 354.90821 * 14 13 3 16 16 C 1.50700 * 120.00177 * 174.91559 * 14 13 3 17 17 H 1.09001 * 109.46782 * 314.42560 * 16 14 13 18 18 O 1.42902 * 109.47273 * 194.42774 * 16 14 13 19 19 C 1.52997 * 109.47160 * 74.42432 * 16 14 13 20 20 H 1.08997 * 109.47095 * 54.40552 * 19 16 14 21 21 C 1.53000 * 109.47367 * 294.39794 * 19 16 14 22 22 C 1.50707 * 109.46897 * 174.39952 * 19 16 14 23 23 C 1.38237 * 119.99906 * 59.73086 * 22 19 16 24 24 C 1.38238 * 119.99532 * 179.74454 * 23 22 19 25 25 C 1.38230 * 120.00089 * 0.54842 * 24 23 22 26 26 C 1.50699 * 119.99813 * 179.72523 * 25 24 23 27 27 C 1.38236 * 120.00227 * 359.70234 * 25 24 23 28 28 C 1.38233 * 119.99745 * 240.00199 * 22 19 16 29 29 H 1.08998 * 109.47370 * 59.99863 * 1 2 3 30 30 H 1.08995 * 109.47101 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46594 * 299.99852 * 1 2 3 32 32 H 1.08997 * 109.47271 * 239.99961 * 2 1 3 33 33 H 1.09004 * 109.47037 * 119.99827 * 2 1 3 34 34 H 0.97004 * 119.99532 * 179.97438 * 8 7 5 35 35 H 0.97003 * 119.99462 * 94.99661 * 13 3 2 36 36 H 0.96700 * 113.99931 * 299.99769 * 18 16 14 37 37 H 1.09001 * 109.47225 * 187.81943 * 21 19 16 38 38 H 1.09006 * 109.46750 * 67.82562 * 21 19 16 39 39 H 1.09000 * 109.47056 * 307.82468 * 21 19 16 40 40 H 1.07999 * 119.99839 * 359.97438 * 23 22 19 41 41 H 1.08002 * 119.99391 * 180.27044 * 24 23 22 42 42 H 1.08997 * 109.47028 * 269.97867 * 26 25 24 43 43 H 1.09000 * 109.47543 * 29.97881 * 26 25 24 44 44 H 1.09002 * 109.46853 * 149.97702 * 26 25 24 45 45 H 1.08004 * 120.00100 * 179.97438 * 27 25 24 46 46 H 1.08002 * 120.00594 * 359.97438 * 28 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4444 -0.1239 6 1 4.1472 1.8889 0.6522 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3366 -2.1728 9 14 6.0050 0.8814 -1.3818 10 1 6.5976 0.1474 -0.2349 11 1 6.3978 0.2178 -2.6510 12 1 6.4994 2.2816 -1.3823 13 7 1.6524 2.0976 1.2518 14 6 0.4352 2.6644 1.3670 15 8 -0.3040 2.7140 0.4067 16 6 -0.0076 3.2367 2.6889 17 1 0.2288 2.5329 3.4869 18 8 -1.4175 3.4678 2.6597 19 6 0.7208 4.5582 2.9421 20 1 0.5649 5.2269 2.0956 21 6 2.2176 4.2911 3.1124 22 6 0.1791 5.1984 4.1943 23 6 0.2592 4.5308 5.4021 24 6 -0.2330 5.1203 6.5515 25 6 -0.8154 6.3725 6.4912 26 6 -1.3575 7.0125 7.7432 27 6 -0.9002 7.0379 5.2825 28 6 -0.4030 6.4508 4.1340 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8293 -0.0612 -2.9498 35 1 2.2720 2.1232 1.9978 36 1 -1.7006 4.0859 1.9721 37 1 2.7164 5.2071 3.4291 38 1 2.6376 3.9583 2.1632 39 1 2.3652 3.5177 3.8661 40 1 0.7096 3.5503 5.4483 41 1 -0.1664 4.6006 7.4959 42 1 -2.4033 6.7331 7.8706 43 1 -0.7827 6.6708 8.6041 44 1 -1.2784 8.0965 7.6606 45 1 -1.3556 8.0161 5.2353 46 1 -0.4691 6.9707 3.1896 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076116.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:35 Heat of formation + Delta-G solvation = -102.328449 kcal Electronic energy + Delta-G solvation = -25575.120766 eV Core-core repulsion = 22041.989892 eV Total energy + Delta-G solvation = -3533.130874 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.43713 -40.19866 -38.00857 -36.79903 -35.47144 -34.24924 -33.03497 -31.99476 -31.69127 -29.24739 -27.60496 -27.47808 -25.02412 -23.88447 -23.30970 -22.08140 -21.20635 -21.12632 -19.47085 -17.99302 -17.67729 -17.11962 -16.95412 -16.37506 -16.23330 -15.88729 -15.62839 -15.26842 -14.98171 -14.59504 -14.50925 -14.41432 -14.19531 -13.92794 -13.55257 -13.44679 -13.22888 -13.12654 -12.98150 -12.93705 -12.83386 -12.62806 -12.54470 -12.34059 -12.16777 -12.07386 -11.79900 -11.76146 -11.61138 -11.42004 -11.05690 -10.56577 -10.34548 -9.74452 -9.64068 -9.29013 -8.14909 -6.32183 0.47740 0.58174 1.45785 1.47050 1.54687 1.73982 2.34299 2.57688 2.89920 3.14607 3.30207 3.66396 3.76943 3.94633 4.07499 4.11850 4.17540 4.21577 4.41068 4.46679 4.50301 4.54271 4.63077 4.67488 4.73702 4.84728 4.87919 4.92347 5.02462 5.04154 5.05476 5.23544 5.26206 5.28310 5.35643 5.41649 5.55098 5.58840 5.62400 5.77339 5.77807 5.78733 5.91324 6.17115 6.20040 6.52684 6.75688 6.96177 7.33944 7.53795 8.90125 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.022115 B = 0.003344 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.815689 B = 8370.384262 C = 9115.885559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 C 0.276 3.724 4 H -0.001 1.001 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.264 1.264 11 H -0.289 1.289 12 H -0.271 1.271 13 N -0.698 5.698 14 C 0.474 3.526 15 O -0.585 6.585 16 C 0.113 3.887 17 H 0.132 0.868 18 O -0.545 6.545 19 C -0.067 4.067 20 H 0.076 0.924 21 C -0.155 4.155 22 C -0.074 4.074 23 C -0.116 4.116 24 C -0.128 4.128 25 C -0.102 4.102 26 C -0.112 4.112 27 C -0.128 4.128 28 C -0.124 4.124 29 H 0.025 0.975 30 H 0.047 0.953 31 H 0.040 0.960 32 H 0.072 0.928 33 H 0.042 0.958 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.386 0.614 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.130 0.870 41 H 0.137 0.863 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.135 0.865 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.989 11.225 19.042 22.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.173 3.827 4 H 0.017 0.983 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.792 3.208 10 H -0.189 1.189 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.350 5.350 14 C 0.260 3.740 15 O -0.466 6.466 16 C 0.050 3.950 17 H 0.150 0.850 18 O -0.350 6.350 19 C -0.087 4.087 20 H 0.094 0.906 21 C -0.213 4.213 22 C -0.074 4.074 23 C -0.134 4.134 24 C -0.145 4.145 25 C -0.102 4.102 26 C -0.168 4.168 27 C -0.146 4.146 28 C -0.142 4.142 29 H 0.044 0.956 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.091 0.909 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.235 0.765 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.098 0.902 40 H 0.148 0.852 41 H 0.155 0.845 42 H 0.093 0.907 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.153 0.847 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -5.491 10.729 18.691 22.240 hybrid contribution 1.052 0.130 -1.088 1.519 sum -4.439 10.859 17.603 21.154 Atomic orbital electron populations 1.21663 0.97245 0.99327 0.99950 1.21803 0.93487 0.99377 1.01442 1.18370 0.93710 0.89014 0.81621 0.98340 1.21539 0.91350 1.38871 1.06662 0.90864 1.25752 1.03132 0.94436 0.95088 1.70045 1.37088 1.38371 1.09871 0.85468 0.79340 0.78455 0.77504 1.18855 1.21449 1.19631 1.46475 1.15352 1.55452 1.17693 1.21986 0.82012 0.78313 0.91643 1.90657 1.54746 1.59914 1.41316 1.21970 0.82437 0.97066 0.93531 0.85041 1.86520 1.20422 1.69290 1.58750 1.20643 0.96528 0.95083 0.96408 0.90578 1.22013 0.92817 1.03581 1.02856 1.19520 0.99105 0.94895 0.93899 1.21140 0.99922 1.00151 0.92165 1.21262 0.99039 0.95407 0.98829 1.20252 0.98608 0.95071 0.96220 1.20814 1.01273 1.00831 0.93899 1.21230 1.00520 1.00714 0.92117 1.21211 0.98646 0.95218 0.99096 0.95627 0.93401 0.94117 0.90924 0.93893 0.92669 0.75899 0.76512 0.90722 0.92373 0.90195 0.85237 0.84512 0.90725 0.90716 0.90806 0.84670 0.85735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 8.58 71.98 0.62 -5.02 16 2 C -0.12 -5.96 5.45 30.60 0.17 -5.80 16 3 C 0.28 13.85 2.25 44.25 0.10 13.95 16 4 H 0.00 -0.08 7.51 -2.39 -0.02 -0.10 16 5 C -0.55 -28.11 8.73 25.60 0.22 -27.89 16 6 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -51.89 11.29 21.45 0.24 -51.65 16 9 Si 0.97 41.35 29.54 68.60 2.03 43.38 16 10 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 11 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 12 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 13 N -0.70 -27.56 4.09 -446.10 -1.83 -29.38 16 14 C 0.47 18.06 5.26 87.66 0.46 18.52 16 15 O -0.59 -27.31 13.86 15.60 0.22 -27.09 16 16 C 0.11 3.18 2.74 29.85 0.08 3.27 16 17 H 0.13 3.26 7.56 -2.39 -0.02 3.24 16 18 O -0.54 -16.31 12.54 -130.35 -1.63 -17.94 16 19 C -0.07 -1.61 2.30 -11.54 -0.03 -1.64 16 20 H 0.08 1.95 7.88 -2.39 -0.02 1.93 16 21 C -0.16 -3.45 7.67 71.98 0.55 -2.90 16 22 C -0.07 -1.63 4.27 -19.86 -0.08 -1.72 16 23 C -0.12 -2.35 8.84 22.27 0.20 -2.16 16 24 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 25 C -0.10 -1.78 5.88 -19.87 -0.12 -1.90 16 26 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 27 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 28 C -0.12 -2.59 9.67 22.27 0.22 -2.37 16 29 H 0.02 1.24 7.92 -2.39 -0.02 1.22 16 30 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 31 H 0.04 1.78 5.75 -2.38 -0.01 1.77 16 32 H 0.07 3.98 5.95 -2.39 -0.01 3.97 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 35 H 0.40 13.44 6.52 -92.71 -0.60 12.83 16 36 H 0.39 10.53 8.69 -74.06 -0.64 9.89 16 37 H 0.07 1.51 8.13 -2.39 -0.02 1.49 16 38 H 0.06 1.56 6.12 -2.38 -0.01 1.54 16 39 H 0.08 1.47 7.67 -2.39 -0.02 1.45 16 40 H 0.13 2.28 7.28 -2.91 -0.02 2.26 16 41 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.07 0.80 8.14 -2.39 -0.02 0.79 16 43 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 44 H 0.07 0.73 8.09 -2.39 -0.02 0.71 16 45 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 46 H 0.12 2.36 7.95 -2.91 -0.02 2.34 16 Total: -1.00 -66.26 366.70 2.74 -63.52 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: -0.26 Total: 38.39 kcal Atomic # 6 Polarization: -23.19 SS G_CDS: 3.98 Total: -19.21 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -1.58 Total: -81.04 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.42 Total: -45.03 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -66.26 2.74 -63.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076116.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.811 kcal (2) G-P(sol) polarization free energy of solvation -66.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds