Wall clock time and date at job start Fri Apr 10 2020 21:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47552 * 2 1 4 4 H 1.09000 * 109.46757 * 304.99692 * 3 2 1 5 5 C 1.50696 * 109.47095 * 185.00116 * 3 2 1 6 6 H 1.08000 * 119.99407 * 239.99536 * 5 3 2 7 7 C 1.37875 * 120.00555 * 59.99944 * 5 3 2 8 8 N 1.31522 * 119.99479 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00238 * 179.97438 * 7 5 3 10 10 H 1.48500 * 109.47367 * 60.00036 * 9 7 5 11 11 H 1.48505 * 109.46970 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47308 * 299.99660 * 9 7 5 13 13 N 1.46497 * 109.47137 * 64.99657 * 3 2 1 14 14 C 1.34778 * 120.00236 * 275.00326 * 13 3 2 15 15 O 1.21281 * 119.99852 * 355.48876 * 14 13 3 16 16 C 1.50695 * 120.00154 * 175.49106 * 14 13 3 17 17 H 1.08994 * 109.47179 * 51.95785 * 16 14 13 18 18 O 1.42899 * 109.47050 * 171.95977 * 16 14 13 19 19 C 1.53002 * 109.46959 * 291.95850 * 16 14 13 20 20 H 1.09003 * 109.47366 * 305.40802 * 19 16 14 21 21 C 1.52998 * 109.47079 * 65.41196 * 19 16 14 22 22 C 1.50699 * 109.47138 * 185.41109 * 19 16 14 23 23 C 1.38242 * 119.99944 * 299.72648 * 22 19 16 24 24 C 1.38233 * 119.99932 * 179.78602 * 23 22 19 25 25 C 1.38237 * 119.99978 * 0.44365 * 24 23 22 26 26 C 1.50700 * 119.99850 * 179.83093 * 25 24 23 27 27 C 1.38238 * 120.00162 * 359.81043 * 25 24 23 28 28 C 1.38234 * 120.00019 * 359.97438 * 27 25 24 29 29 H 1.08996 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46848 * 60.00173 * 1 2 3 31 31 H 1.09004 * 109.46963 * 300.00512 * 1 2 3 32 32 H 1.09006 * 109.46848 * 119.99827 * 2 1 3 33 33 H 1.09004 * 109.46963 * 239.99488 * 2 1 3 34 34 H 0.96999 * 119.99698 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99940 * 95.00546 * 13 3 2 36 36 H 0.96701 * 114.00530 * 60.00202 * 18 16 14 37 37 H 1.08991 * 109.47100 * 53.46363 * 21 19 16 38 38 H 1.08998 * 109.46816 * 173.46476 * 21 19 16 39 39 H 1.09005 * 109.46938 * 293.45948 * 21 19 16 40 40 H 1.07997 * 119.99782 * 0.02562 * 23 22 19 41 41 H 1.07998 * 120.00135 * 180.27249 * 24 23 22 42 42 H 1.08994 * 109.47467 * 269.97580 * 26 25 24 43 43 H 1.08993 * 109.47335 * 29.98065 * 26 25 24 44 44 H 1.09010 * 109.46960 * 149.97597 * 26 25 24 45 45 H 1.07994 * 120.00143 * 180.02562 * 27 25 24 46 46 H 1.07990 * 120.00453 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1239 6 1 4.1472 1.8887 0.6523 7 6 4.1434 0.8782 -1.2279 8 7 3.4062 0.3364 -2.1729 9 14 6.0050 0.8810 -1.3817 10 1 6.5976 0.1470 -0.2348 11 1 6.3979 0.2164 -2.6503 12 1 6.4996 2.2812 -1.3822 13 7 1.6525 2.0975 1.2517 14 6 0.4353 2.6644 1.3669 15 8 -0.3079 2.7047 0.4093 16 6 -0.0023 3.2484 2.6854 17 1 0.7594 3.9385 3.0478 18 8 -1.2354 3.9490 2.5102 19 6 -0.1958 2.1222 3.7028 20 1 -0.8860 1.3817 3.2985 21 6 1.1523 1.4587 3.9916 22 6 -0.7598 2.6901 4.9797 23 6 -0.0534 3.6495 5.6808 24 6 -0.5729 4.1737 6.8496 25 6 -1.7945 3.7318 7.3223 26 6 -2.3590 4.3005 8.5986 27 6 -2.4985 2.7686 6.6240 28 6 -1.9811 2.2476 5.4528 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 0.8901 33 1 1.8933 -0.5139 -0.8900 34 1 3.8293 -0.0621 -2.9494 35 1 2.2720 2.1232 1.9977 36 1 -1.9602 3.3955 2.1888 37 1 1.8758 2.2189 4.2855 38 1 1.0360 0.7362 4.7994 39 1 1.5053 0.9481 3.0955 40 1 0.9024 3.9923 5.3132 41 1 -0.0231 4.9264 7.3950 42 1 -2.0212 3.7014 9.4441 43 1 -2.0164 5.3279 8.7214 44 1 -3.4480 4.2837 8.5534 45 1 -3.4530 2.4237 6.9930 46 1 -2.5308 1.4949 4.9074 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358076118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 21:34:40 Heat of formation + Delta-G solvation = -99.979601 kcal Electronic energy + Delta-G solvation = -25716.455557 eV Core-core repulsion = 22183.426536 eV Total energy + Delta-G solvation = -3533.029020 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46578 -40.18941 -37.98038 -36.84376 -35.46043 -34.24137 -32.99544 -32.02291 -31.69701 -29.19116 -27.64502 -27.45926 -24.99430 -23.91057 -23.32306 -22.06185 -21.21603 -21.11549 -19.42395 -18.07648 -17.70466 -17.12189 -16.92387 -16.31231 -16.20244 -15.71047 -15.58958 -15.49641 -15.10278 -14.61098 -14.52752 -14.24913 -14.13470 -13.94149 -13.63036 -13.37544 -13.23696 -13.09096 -12.97642 -12.92375 -12.82028 -12.65728 -12.56893 -12.35744 -12.16358 -12.03192 -11.79322 -11.72913 -11.61161 -11.39256 -11.03709 -10.56289 -10.35651 -9.74054 -9.61154 -9.28856 -8.15381 -6.32768 0.48227 0.58613 1.45279 1.46680 1.54274 1.74342 2.34182 2.58097 2.89831 3.14020 3.29936 3.66727 3.77900 3.94858 4.08068 4.12528 4.17947 4.21944 4.42129 4.48824 4.50604 4.56552 4.63889 4.68223 4.74951 4.85775 4.88205 4.93548 5.02208 5.05014 5.07248 5.25459 5.27078 5.29610 5.35891 5.44162 5.56213 5.59384 5.61958 5.77789 5.78335 5.79905 5.92091 6.18069 6.20498 6.53076 6.75165 6.96745 7.33578 7.53865 8.89462 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024803 B = 0.003286 C = 0.003118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.640321 B = 8519.253343 C = 8977.274567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.119 4.119 3 C 0.276 3.724 4 H -0.005 1.005 5 C -0.549 4.549 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.967 3.033 10 H -0.263 1.263 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.698 5.698 14 C 0.472 3.528 15 O -0.584 6.584 16 C 0.112 3.888 17 H 0.131 0.869 18 O -0.545 6.545 19 C -0.065 4.065 20 H 0.078 0.922 21 C -0.158 4.158 22 C -0.074 4.074 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.102 4.102 26 C -0.112 4.112 27 C -0.128 4.128 28 C -0.123 4.123 29 H 0.047 0.953 30 H 0.022 0.978 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.385 0.615 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.062 0.938 40 H 0.129 0.871 41 H 0.136 0.864 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.136 0.864 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.793 3.735 21.338 23.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.158 4.158 3 C 0.172 3.828 4 H 0.013 0.987 5 C -0.587 4.587 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.188 1.188 11 H -0.214 1.214 12 H -0.198 1.198 13 N -0.350 5.350 14 C 0.259 3.741 15 O -0.465 6.465 16 C 0.049 3.951 17 H 0.148 0.852 18 O -0.350 6.350 19 C -0.084 4.084 20 H 0.097 0.903 21 C -0.216 4.216 22 C -0.074 4.074 23 C -0.135 4.135 24 C -0.146 4.146 25 C -0.102 4.102 26 C -0.168 4.168 27 C -0.146 4.146 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.042 0.958 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.235 0.765 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.081 0.919 40 H 0.147 0.853 41 H 0.154 0.846 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.153 0.847 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.949 4.160 20.699 22.560 hybrid contribution 0.801 -0.604 -0.836 1.306 sum -7.148 3.556 19.863 21.407 Atomic orbital electron populations 1.21673 0.97098 0.99346 1.00074 1.21759 0.93642 0.98937 1.01438 1.18370 0.93582 0.89254 0.81546 0.98684 1.21555 0.91516 1.38905 1.06706 0.91039 1.25745 1.03145 0.94434 0.95056 1.70043 1.37070 1.38321 1.09860 0.85468 0.79343 0.78383 0.77572 1.18752 1.21364 1.19815 1.46542 1.15445 1.55380 1.17596 1.22005 0.82378 0.78129 0.91604 1.90664 1.54905 1.59562 1.41419 1.21959 0.88540 0.94985 0.89625 0.85203 1.86522 1.19982 1.40058 1.88457 1.20618 0.99538 0.95907 0.92326 0.90343 1.22082 0.94976 1.01623 1.02894 1.19534 0.95176 0.97442 0.95275 1.21140 1.00293 0.96590 0.95449 1.21256 0.96043 1.00700 0.96586 1.20251 0.95070 0.96941 0.97921 1.20812 1.01322 1.01129 0.93555 1.21230 1.00597 0.97421 0.95314 1.21214 0.95363 1.00506 0.97013 0.93350 0.95838 0.93613 0.93670 0.91158 0.92655 0.75790 0.76540 0.90398 0.90712 0.91876 0.85328 0.84612 0.90429 0.90930 0.90929 0.84656 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.57 71.98 0.62 -4.76 16 2 C -0.12 -5.65 5.45 30.59 0.17 -5.48 16 3 C 0.28 13.79 2.25 44.24 0.10 13.89 16 4 H 0.00 -0.29 7.52 -2.39 -0.02 -0.31 16 5 C -0.55 -28.43 8.73 25.60 0.22 -28.21 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -51.88 11.29 21.45 0.24 -51.63 16 9 Si 0.97 41.55 29.54 68.60 2.03 43.58 16 10 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 11 H -0.29 -12.37 7.11 99.48 0.71 -11.67 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 N -0.70 -27.42 3.78 -446.11 -1.69 -29.11 16 14 C 0.47 17.98 5.45 87.66 0.48 18.46 16 15 O -0.58 -27.34 13.82 15.88 0.22 -27.12 16 16 C 0.11 3.15 2.76 29.85 0.08 3.24 16 17 H 0.13 3.27 7.60 -2.39 -0.02 3.25 16 18 O -0.55 -16.40 12.49 -130.06 -1.62 -18.02 16 19 C -0.06 -1.50 2.30 -11.54 -0.03 -1.53 16 20 H 0.08 1.92 7.88 -2.39 -0.02 1.90 16 21 C -0.16 -3.41 7.68 71.98 0.55 -2.86 16 22 C -0.07 -1.61 4.29 -19.86 -0.09 -1.69 16 23 C -0.12 -2.37 8.83 22.27 0.20 -2.17 16 24 C -0.13 -2.35 9.70 22.27 0.22 -2.13 16 25 C -0.10 -1.78 5.88 -19.86 -0.12 -1.90 16 26 C -0.11 -1.31 10.01 71.24 0.71 -0.60 16 27 C -0.13 -2.33 9.70 22.27 0.22 -2.12 16 28 C -0.12 -2.52 9.67 22.27 0.22 -2.30 16 29 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.02 1.10 7.91 -2.38 -0.02 1.08 16 31 H 0.04 1.84 5.74 -2.39 -0.01 1.83 16 32 H 0.04 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.07 3.80 5.95 -2.39 -0.01 3.78 16 34 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.40 13.42 6.39 -92.71 -0.59 12.83 16 36 H 0.39 10.43 8.76 -74.06 -0.65 9.78 16 37 H 0.08 1.41 7.61 -2.39 -0.02 1.39 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.06 1.63 5.72 -2.38 -0.01 1.61 16 40 H 0.13 2.29 7.26 -2.91 -0.02 2.27 16 41 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.07 0.74 8.08 -2.39 -0.02 0.72 16 44 H 0.07 0.74 8.09 -2.38 -0.02 0.72 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.13 2.30 7.95 -2.92 -0.02 2.28 16 Total: -1.00 -66.67 365.98 2.92 -63.75 By element: Atomic # 1 Polarization: 37.68 SS G_CDS: -0.25 Total: 37.42 kcal Atomic # 6 Polarization: -22.86 SS G_CDS: 4.00 Total: -18.86 kcal Atomic # 7 Polarization: -79.30 SS G_CDS: -1.45 Total: -80.74 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -1.40 Total: -45.14 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -66.67 2.92 -63.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358076118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.231 kcal (2) G-P(sol) polarization free energy of solvation -66.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds